Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Forward (+)

50838173 .. 50841585

Gene Structure 3413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2466 bp

ATGGATACTCATGCAGTACATTCTCGTGTTGAAGGTGAGGATGAGGAGCACCACGAGAAGACGTCGGTTTTGAAGAAGATGAAGGCGAAAGCGAGGAAGTTCAGGGATACTATCACAGGGCATGGCCATCACGGCCATGAACCTGAAGGCCATCATACTCCTGATGATCATGATCTGGATGAGGAAGATGACGAAGACGTAGACGACCCAGATGTTCATGCCGCACCAATAGTACGTGACTCGGCAGTTAAGAAAACGGATGCTCCTGTGCAAGGAGACATTTTGAAGCTGCCTGTGGTGAATTTCGGAGACAATAGAGCGGGGAATGATGAGCATGAACCTGTAGTTCCAAGCGAGAGGTCTAATGTCAATGTCAGTGATCCATTGAGGTCTAACGTACCTGAGCTACATGGAACTACAGACCACGGTGCAACGCACAACTCTGCAGCGACTAGGAGGGCTGATGCTCCTGTGCAAGGAGGCACTCATTTCGGGGAGACGCACCATGAATATGATCCTGTAGTGCCAAAAGAGAGGTCTAATGTCGGAATAAGTGATCCGGTGAGGGACTCTGTGCCTGGGCAAAATCGAACTACTACGGGGCATGAGGATCTTTTGGGAGGAGCAAGGACCAAACCGAGTGGTCCAACTACTGGATCTGGTCTTGAGCATGAAGAGCCAAAGGGACTGGTTGATGTAATTGGGGGAGGTTCTCATGCGCCGCTCAACACTATTACCACGGATGTTGACCCAGGTAAGACTAGGGTCAAATTGGGGAAGACTGATGTACTAGGGGAAGGGACTCCTGTGCCTCAGGGTACCCCTGTTTCTTCTGGAACTCACAGAAGTGACATGGACGTCGACCCTAGGCAGACATTTGTTTCCGGACAGGGAGGGCATTTAGGTGAGTCCAGGGTCGATTTGGACCGACCTATAGGACTTGAGGAAGATCCTCATTCATCTAAGGCCAATCCTCAAGCTTACACCCCTTCAAATTACGAGACCAAAGTCACTGATCCCACCAAACCGAGTGGTCCAACTACTGGATCTGTTCTTAAGCATGAAGAGTCGAAGGGATTGGTTGATGTAATTGGGGAAGGTTCTCACGCACCGCACAACACTATTACCACGGATGTTGACACAGGTAAGACTTTTGGCTCCGGGCAAGGAGAGCATTTAGGTCAGACTAGGGTCAAATTGGGGAAGACTGATGTACTAGGGGAAGGGACTCCTGTGCCACAGACTGCCCCTGTTTCTTCTGGAACTCACAGAAGTGACATGGATGTCGACCCTAGGCAGACATTTGTTTCCGGGCAGGGAGGGCATTTAGGTGAGTCCAGGGTCAATGTGGACCGACCTATAGGACTTGAGGAAGCTCATTCACCTAAGGCCAATCCTCAAGCTTACACTCCTTCAAATTACGAGACCAAAGTCACTGATACCACCAAATCTGGTGGTGAGGAAATTGGAGTCACACCGATGCTTCATTCCTTCGATAAGATGAACCTTGACGGTGATGATCGCCAACACTTGAAGAACGGTGCCAAACAAAACCCGTCTACCGGAAGCCATGACCAATTCTCTCCTGATAAACCGTCGAACCAGGGCAGCAGCTACGCTGAAAAATTCTCATATGCCACTTCAGCCATTGCCGACACGGCAATTTGGGCAAAGAATGCAGTTGCTTCCAAGTTGGGATATGGCGGGAACGAGCCTGATCATGATGACTACTCGAGAGGCTATATTACTGGTGCTGGGAAGTCTGGTTCATCACCTCGGAACAAAGTACTTGATCCCTCTACTAACCAATTCAGACCAGCAGAGACTCCACAAGTCCGAGGAACCATCAAAGCGGACCATGACGCCACAACTGATCAGAAGCCAGTCCAGACAGGCGGAAGCTACACTGAGAGGATTTCATCTGCCGGATCCGCCATTGCTGACAAGGCGATATCCGCAAAGAATGTTGGTGCTTCCCAGCTGGGATATGGGGCAACTGATCAGGTGCATGACAGGGAAGATGTTACTCGCACTAATGTGCACTCTGGGACATCGGCAGCGGATCAACACGGCAAGATGATTACCTCTAATCAAGCCGGACAGGACAAGGGGGTGTCTGTGAAGGACTATTTCGTGGAGAAGCTGAGGCCCGGAGAGGAGGACAAAGCGCTTTCGGAGGTTATGAGTGAGACATTACACAAGCCTAAGCCGGGTGTTAAGCAAGAGACAGGGAACTCTCCTAGTGCTAGGCCCAAGGGGAAGGTGACGGAGTCGGCGGAGGTGAGGCAGCGTTTGGGGAATACCGAGGGGAATGAGAATTTTGTGGTGGACAAGATTGAGGAGACTGTTGGTTCGATGCTTGGTGGTGCTGGTAAGAGTGATGAAGAACGTCGGCAAGGTCTCTCTAGCTCTGCTGCTACCGGGGAGGAAGATCAGCACCAGAGGGTACGGGTATCCGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

821

Amino Acids

87.33

Weight (kDa)

5.52

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	16 - 83	6.2e-20	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	305 - 344	3.3e-16	LTI65/LTI78 NYQTKV repeat
LTI65_LTI78_NYQTKV	PF23402	447 - 505	5.9e-25	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	544 - 569	9.2e-11	CAP160 repeat
CAP160	PF07918	639 - 664	4.4e-11	CAP160 repeat
LTI65_PGEED	PF23399	702 - 732	1e-17	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	857, 1283
AatII	GACGTC	2 cut(s)	65, 861
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	2 cut(s)	818, 1541
AccB7I	CCANNNNNTGG	2 cut(s)	653, 1043
AccBSI	CCGCTC	2 cut(s)	320, 724
AccI	GTMKAC	4 cut(s)	201, 861, 1287, 1559
AccIII	TCCGGA	1 cut(s)	884
AcoI	YGGCCR	2 cut(s)	124, 133
AcsI	RAATTY	3 cut(s)	301, 1625, 2317
AcuI	CTGAAG	2 cut(s)	165, 1626
AcyI	GRCGYC	3 cut(s)	62, 858, 1863
AfaI	GTAC	8 cut(s)	18, 234, 399, 789, 820, 1215, 1788, 2448
AfeI	AGCGCT	1 cut(s)	2169
AfiI	CCNNNNNNNGG	6 cut(s)	272, 476, 653, 1043, 1562, 2210
AflII	CTTAAG	1 cut(s)	1055
AgsI	TTSAA	6 cut(s)	32, 73, 286, 993, 1416, 1534
AjnI	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
AleI	CACNNNNGTG	3 cut(s)	846, 1272, 2036
AloI	GAACNNNNNNTCC	2 cut(s)	1750, 1782
Alw21I	GWGCWC	2 cut(s)	51, 2043
Alw44I	GTGCAC	1 cut(s)	2039
Ama87I	CYCGRG	1 cut(s)	1732
Aor13HI	TCCGGA	1 cut(s)	884
Aor51HI	AGCGCT	1 cut(s)	2169
AoxI	GGCC	7 cut(s)	124, 133, 148, 966, 1389, 2147, 2249
ApaLI	GTGCAC	1 cut(s)	2039
ApeKI	GCWGC	7 cut(s)	289, 446, 1608, 1611, 2057, 2287, 2414
ApoI	RAATTY	3 cut(s)	301, 1625, 2317
ArsI	GACNNNNNNTTYG	6 cut(s)	52, 84, 521, 553, 2335, 2367
Asp718I	GGTACC	1 cut(s)	818
AspA2I	CCTAGG	2 cut(s)	866, 1292
AspLEI	GCGC	2 cut(s)	721, 2170
AspS9I	GGNCC	8 cut(s)	630, 644, 925, 1034, 1351, 1855, 2148, 2250
AsuC2I	CCSGG	5 cut(s)	1162, 1312, 2151, 2211, 2422
AvaI	CYCGRG	1 cut(s)	1732
AvaII	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
AvrII	CCTAGG	2 cut(s)	866, 1292
AxyI	CCTNAGG	2 cut(s)	813, 1386
BaeGI	GKGCMC	1 cut(s)	2043
BaeI	ACNNNNGTAYC	2 cut(s)	810, 843
BalI	TGGCCA	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	1928
BanI	GGYRCC	2 cut(s)	818, 1541
BauI	CACGAG	2 cut(s)	24, 53
BbsI	GAAGAC	4 cut(s)	65, 201, 785, 1211
Bbv12I	GWGCWC	2 cut(s)	51, 2043
BbvCI	CCTCAGC	1 cut(s)	2144
BbvI	GCAGC	7 cut(s)	276, 458, 1620, 1623, 2069, 2299, 2401
BccI	CCATC	3 cut(s)	135, 159, 1853
BceAI	ACGGC	3 cut(s)	148, 1674, 2086
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
BciVI	GTATCC	2 cut(s)	100, 2464
BclI	TGATCA	4 cut(s)	166, 1717, 1873, 1999
BcnI	CCSGG	5 cut(s)	1162, 1312, 2151, 2211, 2422
BfmI	CTRYAG	6 cut(s)	342, 417, 444, 519, 933, 1359
BfoI	RGCGCY	1 cut(s)	2171
BfrI	CTTAAG	1 cut(s)	1055
BfuI	GTATCC	2 cut(s)	100, 2464
BglI	GCCNNNNNGGC	2 cut(s)	132, 1658
BisI	GCNGC	9 cut(s)	222, 290, 447, 722, 1609, 1612, 2058, 2288, 2415
BlnI	CCTAGG	2 cut(s)	866, 1292
BlsI	GCNGC	9 cut(s)	223, 291, 448, 723, 1610, 1613, 2059, 2289, 2416
BmcAI	AGTACT	1 cut(s)	1788
Bme18I	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
BmeT110I	CYCGRG	1 cut(s)	1732
BmgT120I	GGNCC	8 cut(s)	630, 644, 925, 1034, 1351, 1855, 2148, 2250
BmiI	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
BmsI	GCATC	4 cut(s)	250, 454, 1470, 2346
BoxI	GACNNNNGTC	4 cut(s)	764, 1007, 1190, 1430
BpiI	GAAGAC	4 cut(s)	65, 201, 785, 1211
Bpu10I	CCTNAGC	3 cut(s)	402, 2144, 2205
BpuEI	CTTGAG	5 cut(s)	686, 960, 962, 1383, 1388
BpuMI	CCSGG	5 cut(s)	1162, 1312, 2151, 2211, 2422
BsaAI	YACGTR	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	3 cut(s)	62, 858, 1863
BsaI	GGTCTC	3 cut(s)	995, 1418, 2405
BsaWI	WCCGGW	3 cut(s)	559, 884, 1562
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	6 cut(s)	272, 476, 653, 1043, 1562, 2210
Bse1I	ACTGG	5 cut(s)	658, 693, 1048, 1753, 1883
Bse21I	CCTNAGG	2 cut(s)	813, 1386
Bse3DI	GCAATG	2 cut(s)	1647, 1935
Bse8I	GATNNNNATC	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	884
BseBI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
BseGI	GGATG	6 cut(s)	46, 184, 265, 748, 1138, 1288
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	6 cut(s)	272, 476, 653, 1043, 1562, 2210
BseMI	GCAATG	2 cut(s)	1647, 1935
BseMII	CTCAG	4 cut(s)	393, 827, 1899, 2135
BseNI	ACTGG	5 cut(s)	658, 693, 1048, 1753, 1883
BseRI	GAGGAG	4 cut(s)	59, 636, 2171, 2354
BseSI	GKGCMC	1 cut(s)	2043
BseXI	GCAGC	7 cut(s)	276, 458, 1620, 1623, 2069, 2299, 2401
BseYI	CCCAGC	3 cut(s)	1754, 1977, 1981
BshFI	GGCC	7 cut(s)	126, 135, 150, 968, 1391, 2149, 2251
BshNI	GGYRCC	2 cut(s)	818, 1541
BsiHKAI	GWGCWC	2 cut(s)	51, 2043
BsiHKCI	CYCGRG	1 cut(s)	1732
BslFI	GGGAC	5 cut(s)	581, 699, 814, 1240, 2062
BslI	CCNNNNNNNGG	6 cut(s)	272, 476, 653, 1043, 1562, 2210
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	5 cut(s)	581, 699, 814, 1240, 2062
BsmI	GAATGC	1 cut(s)	1681
BsnI	GGCC	7 cut(s)	126, 135, 150, 968, 1391, 2149, 2251
Bso31I	GGTCTC	3 cut(s)	995, 1418, 2405
BsoBI	CYCGRG	1 cut(s)	1732
Bsp1286I	GDGCHC	2 cut(s)	51, 2043
Bsp13I	TCCGGA	1 cut(s)	884
BspANI	GGCC	7 cut(s)	126, 135, 150, 968, 1391, 2149, 2251
BspCNI	CTCAG	4 cut(s)	394, 826, 1900, 2136
BspEI	TCCGGA	1 cut(s)	884
BspHI	TCATGA	2 cut(s)	169, 1720
BspLI	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
BspMAI	CTGCAG	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	669
BspT107I	GGYRCC	2 cut(s)	818, 1541
BspTI	CTTAAG	1 cut(s)	1055
BspTNI	GGTCTC	3 cut(s)	995, 1418, 2405
BsrBI	CCGCTC	2 cut(s)	320, 724
BsrDI	GCAATG	2 cut(s)	1647, 1935
BsrI	ACTGG	5 cut(s)	658, 693, 1048, 1753, 1883
BssNI	GRCGYC	3 cut(s)	62, 858, 1863
BssSI	CACGAG	2 cut(s)	24, 53
BssT1I	CCWWGG	3 cut(s)	866, 1292, 2253
Bst2BI	CACGAG	2 cut(s)	24, 53
Bst2UI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
Bst4CI	ACNGT	5 cut(s)	428, 1514, 1541, 1596, 2347
Bst6I	CTCTTC	2 cut(s)	669, 1059
BstACI	GRCGYC	3 cut(s)	62, 858, 1863
BstAFI	CTTAAG	1 cut(s)	1055
BstAPI	GCANNNNNTGC	1 cut(s)	1676
BstBAI	YACGTR	1 cut(s)	236
BstDEI	CTNAG	7 cut(s)	402, 813, 963, 1386, 1908, 2144, 2205
BstDSI	CCRYGG	3 cut(s)	424, 738, 1128
BstENI	CCTNNNNNAGG	2 cut(s)	270, 474
BstF5I	GGATG	6 cut(s)	46, 184, 265, 748, 1138, 1288
BstH2I	RGCGCY	1 cut(s)	2171
BstHHI	GCGC	2 cut(s)	721, 2170
BstNI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
BstPAI	GACNNNNGTC	4 cut(s)	764, 1007, 1190, 1430
BstSFI	CTRYAG	6 cut(s)	342, 417, 444, 519, 933, 1359
BstSLI	GKGCMC	1 cut(s)	2043
BstV1I	GCAGC	7 cut(s)	276, 458, 1620, 1623, 2069, 2299, 2401
BstV2I	GAAGAC	4 cut(s)	65, 201, 785, 1211
BstX2I	RGATCY	5 cut(s)	610, 656, 949, 1046, 1928
BstYI	RGATCY	5 cut(s)	610, 656, 949, 1046, 1928
Bsu36I	CCTNAGG	2 cut(s)	813, 1386
BsuI	GTATCC	2 cut(s)	100, 2464
BsuRI	GGCC	7 cut(s)	126, 135, 150, 968, 1391, 2149, 2251
BtgI	CCRYGG	3 cut(s)	424, 738, 1128
BtsCI	GGATG	6 cut(s)	46, 184, 265, 748, 1138, 1288
BtsIMutI	CAGTG	4 cut(s)	382, 1011, 1434, 1905
CciI	TCATGA	2 cut(s)	169, 1720
CfoI	GCGC	2 cut(s)	721, 2170
Cfr13I	GGNCC	8 cut(s)	630, 644, 925, 1034, 1351, 1855, 2148, 2250
CseI	GACGC	2 cut(s)	508, 1871
Csp6I	GTAC	8 cut(s)	17, 233, 398, 788, 819, 1214, 1787, 2447
CviQI	GTAC	8 cut(s)	17, 233, 398, 788, 819, 1214, 1787, 2447
DdeI	CTNAG	7 cut(s)	402, 813, 963, 1386, 1908, 2144, 2205
DrdI	GACNNNNNNGTC	2 cut(s)	857, 1283
DseDI	GACNNNNNNGTC	2 cut(s)	857, 1283
EaeI	YGGCCR	2 cut(s)	124, 133
Eam1104I	CTCTTC	2 cut(s)	669, 1059
EarI	CTCTTC	2 cut(s)	669, 1059
EciI	GGCGGA	3 cut(s)	1911, 1921, 2291
Eco130I	CCWWGG	3 cut(s)	866, 1292, 2253
Eco31I	GGTCTC	3 cut(s)	995, 1418, 2405
Eco32I	GATATC	1 cut(s)	1953
Eco47I	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
Eco47III	AGCGCT	1 cut(s)	2169
Eco57I	CTGAAG	2 cut(s)	165, 1626
Eco81I	CCTNAGG	2 cut(s)	813, 1386
Eco88I	CYCGRG	1 cut(s)	1732
EcoNI	CCTNNNNNAGG	2 cut(s)	270, 474
EcoRII	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
EcoRV	GATATC	1 cut(s)	1953
EcoT14I	CCWWGG	3 cut(s)	866, 1292, 2253
ErhI	CCWWGG	3 cut(s)	866, 1292, 2253
Esp3I	CGTCTC	1 cut(s)	491
FaqI	GGGAC	5 cut(s)	581, 699, 814, 1240, 2062
FauI	CCCGC	2 cut(s)	313, 1697
FauNDI	CATATG	1 cut(s)	1633
FbaI	TGATCA	4 cut(s)	166, 1717, 1873, 1999
FblI	GTMKAC	4 cut(s)	201, 861, 1287, 1559
Fnu4HI	GCNGC	9 cut(s)	222, 290, 447, 722, 1609, 1612, 2058, 2288, 2415
FokI	GGATG	6 cut(s)	53, 191, 272, 755, 1145, 1295
Fsp4HI	GCNGC	9 cut(s)	222, 290, 447, 722, 1609, 1612, 2058, 2288, 2415
GlaI	GCGC	2 cut(s)	720, 2169
GluI	GCNGC	9 cut(s)	222, 290, 447, 722, 1609, 1612, 2058, 2288, 2415
GsaI	CCCAGC	3 cut(s)	1758, 1981, 1985
HaeII	RGCGCY	1 cut(s)	2171
HaeIII	GGCC	7 cut(s)	126, 135, 150, 968, 1391, 2149, 2251
HgaI	GACGC	2 cut(s)	508, 1871
HhaI	GCGC	2 cut(s)	721, 2170
Hin1I	GRCGYC	3 cut(s)	62, 858, 1863
Hin6I	GCGC	2 cut(s)	719, 2168
HinP1I	GCGC	2 cut(s)	719, 2168
HincII	GTYRAC	4 cut(s)	748, 862, 1138, 1288
HindII	GTYRAC	4 cut(s)	748, 862, 1138, 1288
HindIII	AAGCTT	2 cut(s)	978, 1401
Hpy166II	GTNNAC	9 cut(s)	202, 748, 862, 1138, 1288, 1351, 1560, 2041, 2329
Hpy188I	TCNGA	8 cut(s)	308, 548, 1185, 1779, 1814, 1838, 1878, 2176
Hpy8I	GTNNAC	9 cut(s)	202, 748, 862, 1138, 1288, 1351, 1560, 2041, 2329
Hpy99I	CGWCG	4 cut(s)	67, 863, 1600, 2394
HpyCH4III	ACNGT	5 cut(s)	428, 1514, 1541, 1596, 2347
HpyCH4IV	ACGT	6 cut(s)	62, 198, 235, 396, 858, 2389
HpyCH4V	TGCA	8 cut(s)	14, 271, 431, 446, 475, 1679, 2008, 2041
HpyF3I	CTNAG	7 cut(s)	402, 813, 963, 1386, 1908, 2144, 2205
HpySE526I	ACGT	6 cut(s)	62, 198, 235, 396, 858, 2389
Hsp92I	GRCGYC	3 cut(s)	62, 858, 1863
HspAI	GCGC	2 cut(s)	719, 2168
Kpn2I	TCCGGA	1 cut(s)	884
KpnI	GGTACC	1 cut(s)	822
Ksp22I	TGATCA	4 cut(s)	166, 1717, 1873, 1999
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	5 cut(s)	46, 268, 472, 623, 1163
Lsp1109I	GCAGC	7 cut(s)	276, 458, 1620, 1623, 2069, 2299, 2401
LweI	GCATC	4 cut(s)	250, 454, 1470, 2346
MaeII	ACGT	6 cut(s)	62, 198, 235, 396, 858, 2389
MaeIII	GTNAC	8 cut(s)	236, 848, 1009, 1274, 1432, 1471, 2023, 2263
MbiI	CCGCTC	2 cut(s)	320, 724
MflI	RGATCY	5 cut(s)	610, 656, 949, 1046, 1928
MhlI	GDGCHC	2 cut(s)	51, 2043
MlsI	TGGCCA	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	126
MmeI	TCCRAC	3 cut(s)	526, 671, 1061
Mox20I	TGGCCA	1 cut(s)	126
MroI	TCCGGA	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	3 cut(s)	249, 1056, 2217
MslI	CAYNNNNRTG	9 cut(s)	24, 135, 510, 846, 903, 1272, 1329, 1478, 2036
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	2 cut(s)	1981, 2060
MspCI	CTTAAG	1 cut(s)	1055
Mva1269I	GAATGC	1 cut(s)	1681
MvaI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
NciI	CCSGG	5 cut(s)	1162, 1312, 2151, 2211, 2422
NdeI	CATATG	1 cut(s)	1633
NlaIV	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	7 cut(s)	236, 848, 1009, 1274, 1432, 1471, 2263
OliI	CACNNNNGTG	3 cut(s)	846, 1272, 2036
PaeR7I	CTCGAG	1 cut(s)	1732
PagI	TCATGA	2 cut(s)	169, 1720
PciSI	GCTCTTC	1 cut(s)	669
PctI	GAATGC	1 cut(s)	1681
PflFI	GACNNNGTC	1 cut(s)	2269
PflMI	CCANNNNNTGG	2 cut(s)	653, 1043
PkrI	GCNGC	9 cut(s)	223, 291, 448, 723, 1610, 1613, 2059, 2289, 2416
Ppu21I	YACGTR	1 cut(s)	236
PshAI	GACNNNNGTC	4 cut(s)	764, 1007, 1190, 1430
Psp6I	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
PspFI	CCCAGC	3 cut(s)	1754, 1977, 1981
PspGI	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
PspN4I	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
PspPI	GGNCC	8 cut(s)	630, 644, 925, 1034, 1351, 1855, 2148, 2250
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	5 cut(s)	610, 656, 949, 1046, 1928
PsyI	GACNNNGTC	1 cut(s)	2269
PvuII	CAGCTG	1 cut(s)	1981
RsaI	GTAC	8 cut(s)	18, 234, 399, 789, 820, 1215, 1788, 2448
RsaNI	GTAC	8 cut(s)	17, 233, 398, 788, 819, 1214, 1787, 2447
RseI	CAYNNNNRTG	9 cut(s)	24, 135, 510, 846, 903, 1272, 1329, 1478, 2036
SalI	GTCGAC	2 cut(s)	860, 1286
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	3 cut(s)	249, 1056, 2217
SatI	GCNGC	9 cut(s)	222, 290, 447, 722, 1609, 1612, 2058, 2288, 2415
Sau96I	GGNCC	8 cut(s)	630, 644, 925, 1034, 1351, 1855, 2148, 2250
ScaI	AGTACT	1 cut(s)	1788
SduI	GDGCHC	2 cut(s)	51, 2043
SfaNI	GCATC	4 cut(s)	250, 454, 1470, 2346
SfcI	CTRYAG	6 cut(s)	342, 417, 444, 519, 933, 1359
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	1732
SinI	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
SlaI	CTCGAG	1 cut(s)	1732
SmiMI	CAYNNNNRTG	9 cut(s)	24, 135, 510, 846, 903, 1272, 1329, 1478, 2036
SmlI	CTYRAG	7 cut(s)	665, 941, 975, 1055, 1367, 1398, 1732
SmoI	CTYRAG	7 cut(s)	665, 941, 975, 1055, 1367, 1398, 1732
StyI	CCWWGG	3 cut(s)	866, 1292, 2253
TaaI	ACNGT	5 cut(s)	428, 1514, 1541, 1596, 2347
TaiI	ACGT	6 cut(s)	65, 201, 238, 399, 861, 2392
TaqI	TCGA	9 cut(s)	589, 861, 918, 1070, 1287, 1494, 1598, 1733, 2354
TaqII	GACCGA	2 cut(s)	942, 1368
TatI	WGTACW	4 cut(s)	16, 787, 1213, 1786
TauI	GCSGC	2 cut(s)	224, 724
Tru1I	TTAA	3 cut(s)	249, 1056, 2217
Tru9I	TTAA	3 cut(s)	249, 1056, 2217
TscAI	CASTG	4 cut(s)	382, 1018, 1441, 1912
TseFI	GTSAC	7 cut(s)	236, 848, 1009, 1274, 1432, 1471, 2263
TseI	GCWGC	7 cut(s)	289, 446, 1608, 1611, 2057, 2287, 2414
Tsp45I	GTSAC	7 cut(s)	236, 848, 1009, 1274, 1432, 1471, 2263
TspGWI	ACGGA	4 cut(s)	272, 755, 1145, 2282
TspRI	CASTG	4 cut(s)	382, 1018, 1441, 1912
Tth111I	GACNNNGTC	1 cut(s)	2269
Van91I	CCANNNNNTGG	2 cut(s)	653, 1043
Vha464I	CTTAAG	1 cut(s)	1055
VneI	GTGCAC	1 cut(s)	2039
VpaK11BI	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
XagI	CCTNNNNNAGG	2 cut(s)	270, 474
XapI	RAATTY	3 cut(s)	301, 1625, 2317
XcmI	CCANNNNNNNNNTGG	3 cut(s)	919, 1345, 1985
XhoI	CTCGAG	1 cut(s)	1732
XmaJI	CCTAGG	2 cut(s)	866, 1292
XmiI	GTMKAC	4 cut(s)	201, 861, 1287, 1559
ZraI	GACGTC	2 cut(s)	63, 859
ZrmI	AGTACT	1 cut(s)	1788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.