Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Forward (+)

50827993 .. 50828953

Gene Structure 961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG379100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGCATAAATAGTCATCTCGGATGCTACACTGAGAAGATTTCATCTGCCGGATCTGCCATTGCTGACAAGGCGATATACGCAAAGAATGTTGTTGCGTCCAAGCTGGGATATGGGGCAAGTGATCAGGTGCATGACAGGGAAGATGTTACTCGCACTAATGTGCAGTCTGGAACAACAGCAGCGGATCAACATGGCAAGACGATTACCTCTTCAGTGTATGAGAAGGTTGCCGGGGCAGGGACTGCTGTAATGTCCAAGTTTCAAGGTGGGATTACTGTTAGTACTGGCAGGGACACTAGTACTGGGGCTGTTAATCAAGCCGGACAGGACAAAGGGGGGTCTGTGAAGGACTATTTCGTGAAGAAGTTGAAGCCCGGAGAAGAGGACAAAGCGCTTTCGGAGGTTATAAGTGAGACATTACACAAGCCTAAGCCGGCTGTTAAGCAAGAGACAGGGTACCCTGCTAGTGCTAGGCCCAAGGGGAAGGTGACTGAGTCGGCGGAGGTGAGGCAACGTTTGGGGAATACCGAGGGGAATGAGAATTTTGTGGTGGACAAGATTGAGGTTACTGTTGGTTCGATGCTTGATGGTACTGGTAAGAGTGATAAAGAACGTGGGCAAGGTCTCTCTAGATCTGCTGCTACCGGGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

220

Amino Acids

23.03

Weight (kDa)

6.92

Isoelectric Point (pI)

19.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP160	PF07918	14 - 39	8.1e-13	CAP160 repeat
LTI65_PGEED	PF23399	111 - 141	5.6e-17	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	459
AciI	CCGC	2 cut(s)	185, 503
AclI	AACGTT	1 cut(s)	517
AclWI	GGATC	2 cut(s)	61, 195
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	286, 304, 461, 595
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	266, 373
AhlI	ACTAGT	1 cut(s)	299
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw26I	GTCTC	3 cut(s)	410, 446, 632
AlwI	GGATC	2 cut(s)	61, 195
AlwNI	CAGNNNCTG	1 cut(s)	245
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	182, 641
ApoI	RAATTY	1 cut(s)	544
Asp718I	GGTACC	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	477
AsuC2I	CCSGG	3 cut(s)	235, 378, 649
AsuHPI	GGTGA	2 cut(s)	502, 520
BanI	GGYRCC	1 cut(s)	459
BbvI	GCAGC	2 cut(s)	194, 628
BccI	CCATC	1 cut(s)	584
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	3 cut(s)	235, 378, 649
BcoDI	GTCTC	3 cut(s)	410, 446, 632
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	4 cut(s)	300, 468, 474, 633
BfoI	RGCGCY	1 cut(s)	398
BglII	AGATCT	1 cut(s)	635
BisI	GCNGC	2 cut(s)	183, 642
BlsI	GCNGC	2 cut(s)	184, 643
BmcAI	AGTACT	2 cut(s)	286, 304
Bme1390I	CCNGG	3 cut(s)	235, 378, 649
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	461
BmrFI	CCNGG	3 cut(s)	235, 378, 649
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	14, 573
BmuI	ACTGGG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	432
BpuMI	CCSGG	3 cut(s)	235, 378, 649
BsaI	GGTCTC	1 cut(s)	632
BsaJI	CCNNGG	4 cut(s)	234, 480, 531, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	3 cut(s)	292, 310, 601
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	4 cut(s)	234, 480, 531, 648
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	24, 486
BseNI	ACTGG	3 cut(s)	292, 310, 601
BseXI	GCAGC	2 cut(s)	194, 628
BseYI	CCCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	478
BshNI	GGYRCC	1 cut(s)	459
BsiSI	CCGG	6 cut(s)	51, 234, 324, 378, 437, 648
BslFI	GGGAC	2 cut(s)	256, 308
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	3 cut(s)	410, 446, 632
BsmFI	GGGAC	2 cut(s)	256, 308
BsnI	GGCC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	632
Bsp143I	GATC	4 cut(s)	53, 124, 187, 635
BspACI	CCGC	2 cut(s)	185, 503
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	2 cut(s)	25, 487
BspLI	GGNNCC	1 cut(s)	461
BspPI	GGATC	2 cut(s)	61, 195
BspT107I	GGYRCC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	3 cut(s)	292, 310, 601
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	234, 480, 531, 648
BssMI	GATC	4 cut(s)	53, 124, 187, 635
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	280, 574
Bst6I	CTCTTC	2 cut(s)	217, 378
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	33, 432, 495
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	4 cut(s)	56, 127, 190, 638
BstMAI	GTCTC	3 cut(s)	410, 446, 632
BstMBI	GATC	4 cut(s)	53, 124, 187, 635
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 71, 80, 245
BstSCI	CCNGG	3 cut(s)	233, 376, 647
BstV1I	GCAGC	2 cut(s)	194, 628
BstX2I	RGATCY	2 cut(s)	53, 635
BstYI	RGATCY	2 cut(s)	53, 635
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	30, 222
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	285, 303, 460, 594
CviAII	CATG	2 cut(s)	134, 194
CviJI	RGCY	8 cut(s)	106, 311, 323, 376, 430, 436, 440, 478
CviKI_1	RGCY	8 cut(s)	106, 311, 323, 376, 430, 436, 440, 478
CviQI	GTAC	4 cut(s)	285, 303, 460, 594
DdeI	CTNAG	3 cut(s)	33, 432, 495
DpnI	GATC	4 cut(s)	55, 126, 189, 637
DpnII	GATC	4 cut(s)	53, 124, 187, 635
Eam1104I	CTCTTC	2 cut(s)	217, 378
EarI	CTCTTC	2 cut(s)	217, 378
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	632
Eco47III	AGCGCT	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	2 cut(s)	137, 197
FaiI	YATR	7 cut(s)	8, 79, 114, 135, 195, 222, 410
FaqI	GGGAC	2 cut(s)	256, 308
FatI	CATG	2 cut(s)	133, 193
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	183, 642
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	183, 642
FspBI	CTAG	4 cut(s)	300, 468, 474, 633
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	2 cut(s)	183, 642
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	6 cut(s)	51, 234, 324, 378, 437, 648
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	137, 197
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	1 cut(s)	497
HpaII	CCGG	6 cut(s)	51, 234, 324, 378, 437, 648
HphI	GGTGA	2 cut(s)	502, 520
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	2 cut(s)	23, 403
Hpy188III	TCNNGA	3 cut(s)	171, 361, 633
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	220, 343, 481
HpyCH4III	ACNGT	2 cut(s)	280, 574
HpyCH4IV	ACGT	2 cut(s)	517, 616
HpyCH4V	TGCA	2 cut(s)	133, 166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 71, 80, 245
HpyF3I	CTNAG	3 cut(s)	33, 432, 495
HpySE526I	ACGT	2 cut(s)	517, 616
Hsp92II	CATG	2 cut(s)	137, 197
HspAI	GCGC	1 cut(s)	395
KpnI	GGTACC	1 cut(s)	463
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	53, 124, 187, 635
Lsp1109I	GCAGC	2 cut(s)	194, 628
LweI	GCATC	2 cut(s)	14, 573
MaeI	CTAG	4 cut(s)	300, 468, 474, 633
MaeII	ACGT	2 cut(s)	517, 616
MaeIII	GTNAC	3 cut(s)	148, 490, 568
MalI	GATC	4 cut(s)	55, 126, 189, 637
MboI	GATC	4 cut(s)	53, 124, 187, 635
MboII	GAAGA	5 cut(s)	49, 155, 204, 376, 395
MflI	RGATCY	2 cut(s)	53, 635
MluCI	AATT	1 cut(s)	544
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	8 cut(s)	220, 379, 397, 499, 504, 526, 559, 646
MroNI	GCCGGC	1 cut(s)	436
MseI	TTAA	2 cut(s)	315, 444
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	6 cut(s)	51, 234, 324, 378, 437, 648
MspR9I	CCNGG	3 cut(s)	235, 378, 649
MwoI	GCNNNNNNNGC	4 cut(s)	56, 71, 80, 245
NaeI	GCCGGC	1 cut(s)	438
NciI	CCSGG	3 cut(s)	235, 378, 649
NdeII	GATC	4 cut(s)	53, 124, 187, 635
NgoMIV	GCCGGC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	137, 197
NlaIV	GGNNCC	1 cut(s)	461
NmuCI	GTSAC	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	184, 643
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PsiI	TTATAA	1 cut(s)	410
Psp1406I	AACGTT	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	461
PspPI	GGNCC	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	53, 635
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	4 cut(s)	286, 304, 461, 595
RsaNI	GTAC	4 cut(s)	285, 303, 460, 594
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	315, 444
SatI	GCNGC	2 cut(s)	183, 642
Sau3AI	GATC	4 cut(s)	53, 124, 187, 635
Sau96I	GGNCC	1 cut(s)	477
ScaI	AGTACT	2 cut(s)	286, 304
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	235, 378, 649
SfaNI	GCATC	2 cut(s)	14, 573
SmiMI	CAYNNNNRTG	1 cut(s)	161
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	2 cut(s)	185, 503
SspMI	CTAG	4 cut(s)	300, 468, 474, 633
StyD4I	CCNGG	3 cut(s)	233, 376, 647
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	280, 574
TaiI	ACGT	2 cut(s)	520, 619
TaqI	TCGA	1 cut(s)	581
TasI	AATT	1 cut(s)	544
TatI	WGTACW	2 cut(s)	284, 302
Tru1I	TTAA	2 cut(s)	315, 444
Tru9I	TTAA	2 cut(s)	315, 444
TscAI	CASTG	2 cut(s)	37, 222
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	182, 641
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	37, 222
Tth111I	GACNNNGTC	1 cut(s)	496
XapI	RAATTY	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	632
XspI	CTAG	4 cut(s)	300, 468, 474, 633
ZrmI	AGTACT	2 cut(s)	286, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.