Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017163.1

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 611

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 451 bp

atggatactcatgcagtacattctcatgttgaaggtgaggaggaggagcaccatgagaagacgtcggttttgaagaaggtgaaggcgagagcgaggaagttgagggatactatcacaggtcagggcaatcacggccatgaacccgaaggccatcagactcctgataatgatcaagatctggatgaggaggatgacgaagatgtagacgacccagatgtccatggtgcaccaaaatatgactcggcagttgagaaaactgatgctcctgtgcaaggcgacatattgaaggtgcctgtggggaatttcggagacactagagcggggcatgatgagcatgaacctgtagttccaagggagaattctaatgtcaatgtcagtgatccattgagatctaatgtgcctgagctacatggaactacagaccacggtgcaagtaggttgcttcaactcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

150

Amino Acids

16.53

Weight (kDa)

4.8

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AatII	GACGTC	1 cut(s)	65
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	301, 358
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	32, 73, 286, 446
AjuI	GAANNNNNNNTTGG	2 cut(s)	343, 375
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw21I	GWGCWC	2 cut(s)	51, 229
Alw26I	GTCTC	1 cut(s)	303
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	133, 148
ApaLI	GTGCAC	1 cut(s)	225
ApoI	RAATTY	2 cut(s)	301, 358
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AsuHPI	GGTGA	2 cut(s)	47, 91
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	2 cut(s)	51, 229
BccI	CCATC	1 cut(s)	159
BceAI	ACGGC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	2 cut(s)	342, 417
BfuI	GTATCC	1 cut(s)	100
BglII	AGATCT	2 cut(s)	175, 389
BmiI	GGNNCC	1 cut(s)	291
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	402
BsaBI	GATNNNNATC	2 cut(s)	168, 174
BsaHI	GRCGYC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	220, 350, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse8I	GATNNNNATC	2 cut(s)	168, 174
BseDI	CCNNGG	3 cut(s)	220, 350, 424
BseGI	GGATG	2 cut(s)	187, 196
BseJI	GATNNNNATC	2 cut(s)	168, 174
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	393
BseRI	GAGGAG	4 cut(s)	53, 56, 59, 200
BseSI	GKGCMC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	135, 150
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	51, 229
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	135, 150
Bsp1286I	GDGCHC	2 cut(s)	51, 229
Bsp143I	GATC	4 cut(s)	169, 175, 379, 389
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	135, 150
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	220, 350, 424
BssMI	GATC	4 cut(s)	169, 175, 379, 389
BssNI	GRCGYC	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	220, 350
Bst4CI	ACNGT	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	2 cut(s)	220, 424
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	187, 196
BstKTI	GATC	4 cut(s)	172, 178, 382, 392
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	4 cut(s)	169, 175, 379, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 331
BstSFI	CTRYAG	2 cut(s)	342, 417
BstSLI	GKGCMC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	175, 389
BstYI	RGATCY	2 cut(s)	175, 389
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	135, 150
BtgI	CCRYGG	2 cut(s)	220, 424
BtsCI	GGATG	2 cut(s)	187, 196
BtsIMutI	CAGTG	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	8 cut(s)	11, 26, 53, 137, 221, 326, 335, 410
CviJI	RGCY	3 cut(s)	135, 150, 406
CviKI_1	RGCY	3 cut(s)	135, 150, 406
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	171, 177, 381, 391
DpnII	GATC	4 cut(s)	169, 175, 379, 389
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	220, 350
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	220, 350
ErhI	CCWWGG	2 cut(s)	220, 350
FaeI	CATG	8 cut(s)	14, 29, 56, 140, 224, 329, 338, 413
FatI	CATG	8 cut(s)	10, 25, 52, 136, 220, 325, 334, 409
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	2 cut(s)	194, 203
FspBI	CTAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	135, 150
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	8 cut(s)	14, 29, 56, 140, 224, 329, 338, 413
HinfI	GANTC	2 cut(s)	157, 239
HphI	GGTGA	2 cut(s)	47, 91
Hpy166II	GTNNAC	2 cut(s)	205, 227
Hpy188I	TCNGA	2 cut(s)	156, 308
Hpy188III	TCNNGA	3 cut(s)	161, 173, 179
Hpy8I	GTNNAC	2 cut(s)	205, 227
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	26, 70, 76, 140, 280
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	4 cut(s)	14, 227, 271, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 331
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	8 cut(s)	14, 29, 56, 140, 224, 329, 338, 413
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	169, 175, 379, 389
LmnI	GCTCC	2 cut(s)	46, 268
LpnPI	CCDG	9 cut(s)	102, 107, 164, 174, 225, 279, 306, 354, 414
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	62
MalI	GATC	4 cut(s)	171, 177, 381, 391
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	4 cut(s)	169, 175, 379, 389
MboII	GAAGA	3 cut(s)	70, 85, 209
MflI	RGATCY	2 cut(s)	175, 389
MhlI	GDGCHC	2 cut(s)	51, 229
MluCI	AATT	2 cut(s)	301, 358
MlyI	GAGTC	2 cut(s)	151, 233
MnlI	CCTC	7 cut(s)	31, 34, 37, 87, 96, 178, 181
MslI	CAYNNNNRTG	2 cut(s)	24, 135
MwoI	GCNNNNNNNGC	2 cut(s)	132, 331
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	169, 175, 379, 389
NlaIII	CATG	8 cut(s)	14, 29, 56, 140, 224, 329, 338, 413
NlaIV	GGNNCC	1 cut(s)	291
NmeAIII	GCCGAG	1 cut(s)	221
PleI	GAGTC	2 cut(s)	151, 233
PpsI	GAGTC	2 cut(s)	151, 233
PspN4I	GGNNCC	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	175, 389
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	2 cut(s)	24, 135
Sau3AI	GATC	4 cut(s)	169, 175, 379, 389
SchI	GAGTC	2 cut(s)	151, 233
SduI	GDGCHC	2 cut(s)	51, 229
SetI	ASST	8 cut(s)	37, 65, 81, 121, 291, 343, 408, 440
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	2 cut(s)	342, 417
SmiMI	CAYNNNNRTG	2 cut(s)	24, 135
Sse9I	AATT	2 cut(s)	301, 358
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	220, 350
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	65
TasI	AATT	2 cut(s)	301, 358
TatI	WGTACW	1 cut(s)	16
TscAI	CASTG	1 cut(s)	382
TspDTI	ATGAA	2 cut(s)	153, 351
TspRI	CASTG	1 cut(s)	382
VneI	GTGCAC	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	301, 358
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.