FvH4_7g29491

Low-temperature-induced 65 kDa

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21682128 .. 21684493
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29491.t1

Sequence Viewer

Length: 1071 bp
ATGAACCTTCATGGCGACGATCGCCAAAACTTGAACAATGGTGCCAACCAGGACACTGGAAGCCATGACCAATTATCTCCTGATAAGCCATCGAACCAGGGCAGCAGCTACATATCATCTGCCACTTCAGTCATTGCCAACACAGCCATGTCGGCAAAGAATGTAGTTGCTTCCAAATTGGGATATGGCGGGACTGAGTCAGCAGAGCATGATGACCACTCGAAAGGCGATGTCACTGGCGCTGGGAAGTCAGGTTCATCGCCTCGTCAGCATCAGAACCAAGTACTTGATCCAGCTACTAACCAATTCAGACCAGCTGAGACTCCACAAATCCGAGGAACAATCCAACCAGACCACAACACTGCAAGTGATGTGAAGCAATCAAACCAGTCCGGTGGAACTTACACTGAGAAGATTTCATCTGCCACCTCTGCCATAGCCGGCAGAGCCCTCTCTGCGAAGAATGTCGTCACTTCCAAGCTGGGATATGGATCGAGTGATCAAGTGCATGATAATCGAGTTGTCACTCCCACTAATGTGCAGCCTGGATCAACACAAGCGGATCAACAGGGCAAGGGCAAGCCAATAACCTCTACTGTTGCGGAGAAGCTGTCGCCTGTGTATGGGAAGGTTGCTGGGGCAGGGACCGCTGTGATGTCCAAGTTTAAAGGCGGGAGTACTGCTAGTACTGGCCGGGACACTAGTACCGAGGCTGTTGGTGAAGCTGGAAAGGACAAAAGGGGGTCTGTGAAGGACTACCTTGTGGAGAAGCTGAGCCCTGGAGAGGAAGACAGAGCACTTTCGAAGGTTATAAGTGAGAAATTACAGATTCATAAGCCGGGTGTTAAGGAACAGGGAGGGGACTCTGCTAGTGCTAAGCCGATGGGTAAGGTGACCGAGTCGGAGGAGGTGAGGCAGCGTTTGGGGAGTACTGAAGGGAATGATAATTATGTGGTGAACAAGATCGAGGACAGTGTTGGTTCAATGCTTGGTGGTACTAATAAGAATGGTGATGAACATCAGTCTGCTGCTACCGGGGAGAACCGGAGGTTGCAGGAATCTGGTAACTGA

Protein Analysis

357

Amino Acids

37.06

Weight (kDa)

6.52

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP160 PF07918 38 - 64 7.5e-13 CAP160 repeat
CAP160 PF07918 139 - 164 4.9e-12 CAP160 repeat
LTI65_PGEED PF23399 245 - 275 1.4e-15 LTI65/LTI78 PGEED repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 5 cut(s) 189, 560, 602, 648, 672
AclWI GGATC 4 cut(s) 284, 499, 556, 570
AcoI YGGCCR 1 cut(s) 691
AcuI CTGAAG 2 cut(s) 111, 954
AfaI GTAC 6 cut(s) 285, 679, 688, 706, 931, 997
AfiI CCNNNNNNNGG 2 cut(s) 623, 784
AgsI TTSAA 2 cut(s) 34, 984
AhlI ACTAGT 1 cut(s) 701
AjnI CCWGG 4 cut(s) 48, 96, 544, 778
AleI CACNNNNGTG 1 cut(s) 536
AloI GAACNNNNNNTCC 2 cut(s) 238, 270
AluBI AGCT 7 cut(s) 108, 296, 317, 481, 610, 725, 772
AluI AGCT 7 cut(s) 108, 296, 317, 481, 610, 725, 772
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 4 cut(s) 284, 499, 556, 570
AoxI GGCC 1 cut(s) 691
ApeKI GCWGC 5 cut(s) 102, 105, 541, 916, 1028
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 645
AsuC2I CCSGG 3 cut(s) 695, 840, 1036
AsuHPI GGTGA 5 cut(s) 731, 904, 922, 967, 1022
AsuII TTCGAA 1 cut(s) 803
AvaII GGWCC 1 cut(s) 645
BaeI ACNNNNGTAYC 2 cut(s) 688, 721
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 451, 779
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 5 cut(s) 114, 117, 553, 928, 1015
BccI CCATC 2 cut(s) 97, 877
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 4 cut(s) 50, 98, 546, 780
BclI TGATCA 1 cut(s) 499
BcnI CCSGG 3 cut(s) 695, 840, 1036
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 701
BfaI CTAG 3 cut(s) 684, 702, 870
BfoI RGCGCY 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 5 cut(s) 103, 106, 542, 917, 1029
BlpI GCTNAGC 2 cut(s) 773, 876
BlsI GCNGC 5 cut(s) 104, 107, 543, 918, 1030
BmcAI AGTACT 4 cut(s) 285, 679, 688, 931
Bme1390I CCNGG 7 cut(s) 50, 98, 546, 695, 780, 840, 1036
Bme18I GGWCC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 645
BmiI GGNNCC 2 cut(s) 43, 646
BmrFI CCNGG 7 cut(s) 50, 98, 546, 695, 780, 840, 1036
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 795
BpmI CTGGAG 1 cut(s) 801
Bpu1102I GCTNAGC 2 cut(s) 773, 876
Bpu14I TTCGAA 1 cut(s) 803
BpuMI CCSGG 3 cut(s) 695, 840, 1036
BsaBI GATNNNNATC 2 cut(s) 490, 1017
BsaJI CCNNGG 5 cut(s) 97, 334, 708, 778, 1035
BsaWI WCCGGW 2 cut(s) 392, 1044
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 784
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 4 cut(s) 61, 241, 388, 694
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 2 cut(s) 490, 1017
BseBI CCWGG 4 cut(s) 50, 98, 546, 780
BseDI CCNNGG 5 cut(s) 97, 334, 708, 778, 1035
BseJI GATNNNNATC 2 cut(s) 490, 1017
BseLI CCNNNNNNNGG 2 cut(s) 623, 784
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 4 cut(s) 186, 309, 399, 764
BseNI ACTGG 4 cut(s) 61, 241, 388, 694
BseRI GAGGAG 1 cut(s) 920
BseXI GCAGC 5 cut(s) 114, 117, 553, 928, 1015
BseYI CCCAGC 3 cut(s) 242, 481, 635
BsgI GTGCAG 1 cut(s) 560
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 693
BshNI GGYRCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 6 cut(s) 393, 441, 694, 839, 1035, 1045
BslFI GGGAC 4 cut(s) 205, 658, 710, 875
BslI CCNNNNNNNGG 2 cut(s) 623, 784
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 4 cut(s) 205, 658, 710, 875
BsnI GGCC 1 cut(s) 693
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 3 cut(s) 451, 779, 799
Bsp143I GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
Bsp1720I GCTNAGC 2 cut(s) 773, 876
BspACI CCGC 5 cut(s) 189, 560, 602, 648, 672
BspANI GGCC 1 cut(s) 693
BspCNI CTCAG 4 cut(s) 187, 310, 400, 765
BspLI GGNNCC 2 cut(s) 43, 646
BspPI GGATC 4 cut(s) 284, 499, 556, 570
BspT104I TTCGAA 1 cut(s) 803
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 4 cut(s) 61, 241, 388, 694
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 5 cut(s) 97, 334, 708, 778, 1035
BssMI GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
Bst2UI CCWGG 4 cut(s) 50, 98, 546, 780
Bst4CI ACNGT 2 cut(s) 598, 974
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 2 cut(s) 442, 581
BstDEI CTNAG 5 cut(s) 195, 318, 408, 773, 876
BstEII GGTNACC 1 cut(s) 892
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 7 cut(s) 22, 292, 494, 502, 551, 565, 966
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 8 cut(s) 21, 143, 152, 268, 431, 446, 455, 647
BstNI CCWGG 4 cut(s) 50, 98, 546, 780
BstPI GGTNACC 1 cut(s) 892
BstSCI CCNGG 7 cut(s) 48, 96, 544, 693, 778, 838, 1034
BstV1I GCAGC 5 cut(s) 114, 117, 553, 928, 1015
BstV2I GAAGAC 1 cut(s) 795
BstXI CCANNNNNNTGG 2 cut(s) 56, 395
BsuRI GGCC 1 cut(s) 693
BtgZI GCGATG 2 cut(s) 243, 243
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 5 cut(s) 54, 234, 360, 405, 979
Cac8I GCNNGC 2 cut(s) 442, 581
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 645
Csp6I GTAC 6 cut(s) 284, 678, 687, 705, 930, 996
CviAII CATG 5 cut(s) 11, 65, 148, 209, 509
CviQI GTAC 6 cut(s) 284, 678, 687, 705, 930, 996
DdeI CTNAG 5 cut(s) 195, 318, 408, 773, 876
DpnI GATC 7 cut(s) 21, 291, 493, 501, 550, 564, 965
DpnII GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
DraI TTTAAA 1 cut(s) 667
EaeI YGGCCR 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 451, 779
Eco47I GGWCC 1 cut(s) 645
Eco57I CTGAAG 2 cut(s) 111, 954
Eco91I GGTNACC 1 cut(s) 892
EcoO65I GGTNACC 1 cut(s) 892
EcoRII CCWGG 4 cut(s) 48, 96, 544, 778
EcoT38I GRGCYC 2 cut(s) 451, 779
FaeI CATG 5 cut(s) 14, 68, 151, 212, 512
FaqI GGGAC 4 cut(s) 205, 658, 710, 875
FatI CATG 5 cut(s) 10, 64, 147, 208, 508
FauI CCCGC 2 cut(s) 182, 665
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 5 cut(s) 103, 106, 542, 917, 1029
FriOI GRGCYC 2 cut(s) 451, 779
Fsp4HI GCNGC 5 cut(s) 103, 106, 542, 917, 1029
FspBI CTAG 3 cut(s) 684, 702, 870
GlaI GCGC 1 cut(s) 241
GluI GCNGC 5 cut(s) 103, 106, 542, 917, 1029
GsaI CCCAGC 3 cut(s) 246, 485, 639
GsuI CTGGAG 1 cut(s) 801
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 1 cut(s) 693
HapII CCGG 6 cut(s) 393, 441, 694, 839, 1035, 1045
HhaI GCGC 1 cut(s) 242
Hin1II CATG 5 cut(s) 14, 68, 151, 212, 512
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 6 cut(s) 197, 322, 829, 863, 899, 1058
HpaII CCGG 6 cut(s) 393, 441, 694, 839, 1035, 1045
HphI GGTGA 5 cut(s) 731, 904, 922, 967, 1022
Hpy166II GTNNAC 1 cut(s) 958
Hpy188I TCNGA 4 cut(s) 276, 311, 335, 904
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 958
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 5 cut(s) 17, 622, 745, 799, 929
HpyCH4III ACNGT 2 cut(s) 598, 974
HpyCH4V TGCA 4 cut(s) 365, 508, 541, 1054
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 143, 152, 268, 431, 446, 455, 647
HpyF3I CTNAG 5 cut(s) 195, 318, 408, 773, 876
Hsp92II CATG 5 cut(s) 14, 68, 151, 212, 512
HspAI GCGC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
Lsp1109I GCAGC 5 cut(s) 114, 117, 553, 928, 1015
LweI GCATC 1 cut(s) 280
MaeI CTAG 3 cut(s) 684, 702, 870
MaeIII GTNAC 5 cut(s) 232, 469, 523, 892, 1064
MalI GATC 7 cut(s) 21, 291, 493, 501, 550, 564, 965
MboI GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
MboII GAAGA 3 cut(s) 424, 472, 800
MhlI GDGCHC 3 cut(s) 451, 779, 799
MluCI AATT 5 cut(s) 71, 176, 305, 821, 946
MlyI GAGTC 4 cut(s) 206, 316, 857, 908
MmeI TCCRAC 2 cut(s) 370, 882
MroNI GCCGGC 1 cut(s) 440
MseI TTAA 2 cut(s) 666, 846
MslI CAYNNNNRTG 2 cut(s) 146, 536
MspA1I CMGCKG 2 cut(s) 317, 650
MspI CCGG 6 cut(s) 393, 441, 694, 839, 1035, 1045
MspR9I CCNGG 7 cut(s) 50, 98, 546, 695, 780, 840, 1036
MvaI CCWGG 4 cut(s) 50, 98, 546, 780
MwoI GCNNNNNNNGC 8 cut(s) 21, 143, 152, 268, 431, 446, 455, 647
NaeI GCCGGC 1 cut(s) 442
NciI CCSGG 3 cut(s) 695, 840, 1036
NdeII GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 5 cut(s) 14, 68, 151, 212, 512
NlaIV GGNNCC 2 cut(s) 43, 646
NmuCI GTSAC 4 cut(s) 232, 469, 523, 892
NspV TTCGAA 1 cut(s) 803
OliI CACNNNNGTG 1 cut(s) 536
PdiI GCCGGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 829, 1058
PflFI GACNNNGTC 2 cut(s) 196, 898
PkrI GCNGC 5 cut(s) 104, 107, 543, 918, 1030
Ple19I CGATCG 1 cut(s) 22
PleI GAGTC 4 cut(s) 205, 316, 857, 907
PpsI GAGTC 4 cut(s) 205, 316, 857, 907
PsiI TTATAA 1 cut(s) 812
Psp6I CCWGG 4 cut(s) 48, 96, 544, 778
PspEI GGTNACC 1 cut(s) 892
PspFI CCCAGC 3 cut(s) 242, 481, 635
PspGI CCWGG 4 cut(s) 48, 96, 544, 778
PspN4I GGNNCC 2 cut(s) 43, 646
PspPI GGNCC 1 cut(s) 645
PsyI GACNNNGTC 2 cut(s) 196, 898
PvuI CGATCG 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 6 cut(s) 285, 679, 688, 706, 931, 997
RsaNI GTAC 6 cut(s) 284, 678, 687, 705, 930, 996
RseI CAYNNNNRTG 2 cut(s) 146, 536
SaqAI TTAA 2 cut(s) 666, 846
SatI GCNGC 5 cut(s) 103, 106, 542, 917, 1029
Sau3AI GATC 7 cut(s) 19, 289, 491, 499, 548, 562, 963
Sau96I GGNCC 1 cut(s) 645
ScaI AGTACT 4 cut(s) 285, 679, 688, 931
SchI GAGTC 4 cut(s) 206, 316, 857, 908
ScrFI CCNGG 7 cut(s) 50, 98, 546, 695, 780, 840, 1036
SduI GDGCHC 3 cut(s) 451, 779, 799
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 803
SinI GGWCC 1 cut(s) 645
SmiMI CAYNNNNRTG 2 cut(s) 146, 536
SpeI ACTAGT 1 cut(s) 701
Sse9I AATT 5 cut(s) 71, 176, 305, 821, 946
SsiI CCGC 5 cut(s) 189, 560, 602, 648, 672
SspMI CTAG 3 cut(s) 684, 702, 870
StyD4I CCNGG 7 cut(s) 48, 96, 544, 693, 778, 838, 1034
TaaI ACNGT 2 cut(s) 598, 974
TaqI TCGA 6 cut(s) 92, 221, 494, 517, 803, 966
TaqII GACCGA 1 cut(s) 911
TasI AATT 5 cut(s) 71, 176, 305, 821, 946
TatI WGTACW 4 cut(s) 283, 677, 686, 929
TfiI GAWTC 2 cut(s) 829, 1058
Tru1I TTAA 2 cut(s) 666, 846
Tru9I TTAA 2 cut(s) 666, 846
TscAI CASTG 5 cut(s) 61, 241, 367, 412, 979
TseFI GTSAC 4 cut(s) 232, 469, 523, 892
TseI GCWGC 5 cut(s) 102, 105, 541, 916, 1028
Tsp45I GTSAC 4 cut(s) 232, 469, 523, 892
TspDTI ATGAA 5 cut(s) 17, 246, 408, 821, 1029
TspRI CASTG 5 cut(s) 61, 241, 367, 412, 979
Tth111I GACNNNGTC 2 cut(s) 196, 898
VpaK11BI GGWCC 1 cut(s) 645
XspI CTAG 3 cut(s) 684, 702, 870
ZrmI AGTACT 4 cut(s) 285, 679, 688, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.