Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Forward (+)

29747237 .. 29749813

Gene Structure 2577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1201000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGAGTCACAAATGGCTCGTCCTCACGATCACGAGGACAACCGCCACACCCAGCACCTTGTCACGCACCAAGGCGAAGAGGAGGACCACCAGGAGAAGTCGGTTCTGAAGAAGGTAAAGGAGAAGGCGAAGAAGATAAAGAACAAGCTCACAAAGCATGGCCACGAACACGAACACGACCATAATGATCTCGACAAGGAAGATGATGAAGAAGACGAAGACCCTGAATTGCATGGTGCAACAACCATAAGGAGTGGTGCACCAGGGCAAGGAGATATTTTGAAGGTGCCAATGGTGAGATTCGGGGACACGAAAGCAGCGATTCAGGATCGCGATCCTCCCGAAGTGCCGCATTTGGAGAGGATCGATCCGATGAAGGAATATGTACCCACCGGGGGTCATTTGGGTCAAACCAGGGTCCATTTGCACCACCGGGGCTTGGACGATCGCACCCCTATTTCTTCTCGTGGAGATGACCAGAAGACCAATGTCAATGTCACTGACCCAAGTCATGCTTTTGCTACAAGGAAAGAAGGGCACTTCGGTCAGTCCGGGGTAAATTTGGACCGACCGAGAGGATTGGAGGAGGATCCACATGCGCCAAAGGCCAATCCTCAAGGTTATACTCCTTCAAACTATGAGACTAAAGTCACTGATCCAACTCATGCAGGCGGTGAAGAAATTGGAATTTCGCCGATTCTCCACTCGTTTAATAAGATTAACATTCATGGTGGAGATGCCAAGCCATCATCGAACCGGGGCAGTAGTTACACGGAGAAAGTTTCATCTGCCACTTCCGCTATCGCTGAAGAGGCGATATCTGCAAAAAATGCAGTTGCTTCCAAGCTTGGGTATGGAGGAGGGAACAATGATCAACACGAAGATGTTAATCCGCATGCTTATTCTCCAGCACATGATTCGACTAATACAGGATTACACCATTATGTTGGAACAAATCAAAACCCGAGCACTGGAAGCCATGATCAATTTTCTCCTGAGCACCCATCAAACCAGGGCGGTAGCTACACGGAGAAAGTTTCATCCGCCACGTCTGCCATTGCTGACAAGGCAATTTCTGCTAAAAACGCCGTCGCTTCCAAGCTAGGATACGGTGGGGACACTGACCAACAGCAACATGGAGATCAGGCAGCCGTTAGGTCCGGGTCAGCTGCACCTGGGCAACAGGGTAAGGGCATTACAGCCGCAGTTACTGAGAAGCTGACACCTGTCTACGAGAAGGTTGCCGGGGCAGGGAGTGCAGTGATGTCGAAACTCCCCGGCGGTGTTGGGACAGCTGGCAAAGAAGAAGTCCACCGGAGTACTGGTACCGCTACTACAGGGGGTGAGTATAACAAATCCGGGCAGGACAAAGGAATTTCTGTGAAAGGCTATTTGTTTGAGAAGTTGAAGCCTGGTGAGGAGGACAGGGCACTGTCCGAGGTGATATCGGAAACCCTACACATGCATAAGGCAGAGCAACCTAGGAGCGGTGCCCGGCCTGTTGGGAAAGTGACCGAGAGCATGGAGGTGACCCAGCGGTTGGGGCCGGATTATGGGGATGGTGACGTCCAGCAGTCTAGCTATGGGAAAGTTGTGGCGGATACCGTTAAAGGGGCTGTTGGTTCATTGCTTGGGAAAGCTGATGAAAGCGCCACTTCTCCTCAGTCCCTTGGTTCTTCAACTGGTACAGAGGGTTTCTCTAGTTCTGGCAGTGGAGTGGCGGAGCGGCGAGGGCATGGCGATGCGGAGCAGCGGAGACTTCAGGGGTCCAGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

593

Amino Acids

62.92

Weight (kDa)

5.95

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	28 - 85	3.8e-17	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	186 - 243	6.6e-30	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	261 - 287	1.2e-12	CAP160 repeat
CAP160	PF07918	346 - 372	1.1e-14	CAP160 repeat
LTI65_PGEED	PF23399	456 - 486	9.1e-18	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1569
Acc65I	GGTACC	1 cut(s)	1325
AccB1I	GGYRCC	3 cut(s)	286, 1325, 1490
AccB7I	CCANNNNNTGG	1 cut(s)	1540
AccBSI	CCGCTC	2 cut(s)	1488, 1726
AccI	GTMKAC	1 cut(s)	1230
AccII	CGCG	1 cut(s)	333
AclWI	GGATC	7 cut(s)	329, 336, 362, 371, 584, 597, 650
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	3 cut(s)	559, 687, 1374
AcuI	CTGAAG	3 cut(s)	128, 828, 1745
AcyI	GRCGYC	1 cut(s)	1566
AfaI	GTAC	4 cut(s)	387, 1321, 1327, 1687
AgsI	TTSAA	4 cut(s)	283, 633, 1408, 1680
AjiI	CACGTC	1 cut(s)	1050
AjnI	CCWGG	6 cut(s)	90, 262, 413, 1011, 1174, 1411
AluBI	AGCT	9 cut(s)	148, 847, 1023, 1102, 1169, 1219, 1295, 1581, 1640
AluI	AGCT	9 cut(s)	148, 847, 1023, 1102, 1169, 1219, 1295, 1581, 1640
Alw21I	GWGCWC	3 cut(s)	262, 971, 1002
Alw26I	GTCTC	2 cut(s)	635, 1750
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	7 cut(s)	329, 336, 362, 371, 584, 597, 650
AlwNI	CAGNNNCTG	2 cut(s)	1211, 1776
Ama87I	CYCGRG	1 cut(s)	964
AoxI	GGCC	4 cut(s)	160, 606, 1496, 1544
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	4 cut(s)	317, 1148, 1169, 1750
ApoI	RAATTY	3 cut(s)	559, 687, 1374
ArsI	GACNNNNNNTTYG	3 cut(s)	36, 1293, 1325
Asp718I	GGTACC	1 cut(s)	1325
AspA2I	CCTAGG	1 cut(s)	1481
AspLEI	GCGC	2 cut(s)	601, 1652
AspS9I	GGNCC	6 cut(s)	85, 418, 565, 1158, 1544, 1767
AsuC2I	CCSGG	9 cut(s)	394, 434, 553, 758, 1162, 1246, 1278, 1360, 1495
AsuHPI	GGTGA	7 cut(s)	307, 686, 1355, 1427, 1453, 1540, 1574
AvaI	CYCGRG	1 cut(s)	964
AvaII	GGWCC	5 cut(s)	85, 418, 565, 1158, 1767
AvrII	CCTAGG	1 cut(s)	1481
BaeGI	GKGCMC	4 cut(s)	262, 540, 1432, 1495
BalI	TGGCCA	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	3 cut(s)	286, 1325, 1490
BauI	CACGAG	2 cut(s)	32, 465
BbsI	GAAGAC	3 cut(s)	219, 225, 488
Bbv12I	GWGCWC	3 cut(s)	262, 971, 1002
BbvI	GCAGC	4 cut(s)	329, 1156, 1160, 1762
BccI	CCATC	3 cut(s)	754, 1012, 1553
BceAI	ACGGC	2 cut(s)	1073, 1136
BcgI	CGANNNNNNTGC	6 cut(s)	900, 934, 1223, 1248, 1257, 1282
BciT130I	CCWGG	6 cut(s)	92, 264, 415, 1013, 1176, 1413
BciVI	GTATCC	2 cut(s)	1100, 1594
BclI	TGATCA	2 cut(s)	871, 982
BcnI	CCSGG	9 cut(s)	394, 434, 553, 758, 1162, 1246, 1278, 1360, 1495
BcoDI	GTCTC	2 cut(s)	635, 1750
BfaI	CTAG	4 cut(s)	1103, 1482, 1578, 1701
BfmI	CTRYAG	1 cut(s)	1335
BfoI	RGCGCY	1 cut(s)	1653
BfuI	GTATCC	2 cut(s)	1100, 1594
BisI	GCNGC	7 cut(s)	318, 350, 1149, 1170, 1203, 1727, 1751
BlnI	CCTAGG	1 cut(s)	1481
BlsI	GCNGC	7 cut(s)	319, 351, 1150, 1171, 1204, 1728, 1752
BmcAI	AGTACT	1 cut(s)	1321
Bme18I	GGWCC	5 cut(s)	85, 418, 565, 1158, 1767
BmeT110I	CYCGRG	1 cut(s)	964
BmgBI	CACGTC	1 cut(s)	1050
BmgT120I	GGNCC	6 cut(s)	85, 418, 565, 1158, 1544, 1767
BmiI	GGNNCC	7 cut(s)	288, 419, 591, 1327, 1492, 1545, 1768
BmsI	GCATC	2 cut(s)	727, 1732
BoxI	GACNNNNGTC	4 cut(s)	488, 507, 647, 1226
BpiI	GAAGAC	3 cut(s)	219, 225, 488
BplI	GAGNNNNNCTC	2 cut(s)	1682, 1714
BpmI	CTGGAG	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	600
BpuMI	CCSGG	9 cut(s)	394, 434, 553, 758, 1162, 1246, 1278, 1360, 1495
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	2 cut(s)	333, 888
BsaHI	GRCGYC	1 cut(s)	1566
BsaWI	WCCGGW	1 cut(s)	1314
BsaXI	ACNNNNNCTCC	2 cut(s)	1309, 1339
Bse1I	ACTGG	3 cut(s)	976, 1327, 1687
Bse3DI	GCAATG	2 cut(s)	1056, 1625
Bse8I	GATNNNNATC	2 cut(s)	333, 888
BseBI	CCWGG	6 cut(s)	92, 264, 415, 1013, 1176, 1413
BseCI	ATCGAT	1 cut(s)	366
BseGI	GGATG	2 cut(s)	1040, 1564
BseJI	GATNNNNATC	2 cut(s)	333, 888
BseMI	GCAATG	2 cut(s)	1056, 1625
BseMII	CTCAG	3 cut(s)	987, 1203, 1676
BseNI	ACTGG	3 cut(s)	976, 1327, 1687
BseRI	GAGGAG	5 cut(s)	95, 599, 873, 1433, 1650
BseSI	GKGCMC	4 cut(s)	262, 540, 1432, 1495
BseXI	GCAGC	4 cut(s)	329, 1156, 1160, 1762
BseYI	CCCAGC	2 cut(s)	51, 1533
BsgI	GTGCAG	2 cut(s)	1155, 1278
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	2 cut(s)	448, 572
BshFI	GGCC	4 cut(s)	162, 608, 1498, 1546
BshNI	GGYRCC	3 cut(s)	286, 1325, 1490
BshVI	ATCGAT	1 cut(s)	366
BsiEI	CGRYCG	2 cut(s)	448, 572
BsiHKAI	GWGCWC	3 cut(s)	262, 971, 1002
BsiHKCI	CYCGRG	1 cut(s)	964
BslFI	GGGAC	4 cut(s)	320, 1130, 1303, 1651
BsmAI	GTCTC	2 cut(s)	635, 1750
BsmFI	GGGAC	4 cut(s)	320, 1130, 1303, 1651
BsnI	GGCC	4 cut(s)	162, 608, 1498, 1546
BsoBI	CYCGRG	1 cut(s)	964
Bsp1286I	GDGCHC	6 cut(s)	262, 540, 971, 1002, 1432, 1495
Bsp68I	TCGCGA	1 cut(s)	333
BspANI	GGCC	4 cut(s)	162, 608, 1498, 1546
BspCNI	CTCAG	3 cut(s)	988, 1204, 1675
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	7 cut(s)	288, 419, 591, 1327, 1492, 1545, 1768
BspPI	GGATC	7 cut(s)	329, 336, 362, 371, 584, 597, 650
BspT107I	GGYRCC	3 cut(s)	286, 1325, 1490
BsrBI	CCGCTC	2 cut(s)	1488, 1726
BsrDI	GCAATG	2 cut(s)	1056, 1625
BsrI	ACTGG	3 cut(s)	976, 1327, 1687
BssNI	GRCGYC	1 cut(s)	1566
BssSI	CACGAG	2 cut(s)	32, 465
BssT1I	CCWWGG	3 cut(s)	70, 1481, 1669
Bst2BI	CACGAG	2 cut(s)	32, 465
Bst2UI	CCWGG	6 cut(s)	92, 264, 415, 1013, 1176, 1413
Bst4CI	ACNGT	3 cut(s)	1112, 1434, 1606
Bst6I	CTCTTC	2 cut(s)	72, 804
BstACI	GRCGYC	1 cut(s)	1566
BstAPI	GCANNNNNTGC	3 cut(s)	830, 1076, 1256
BstC8I	GCNNGC	3 cut(s)	670, 897, 1297
BstDEI	CTNAG	3 cut(s)	996, 1212, 1662
BstEII	GGTNACC	1 cut(s)	1528
BstF5I	GGATG	2 cut(s)	1040, 1564
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	1 cut(s)	1653
BstHHI	GCGC	2 cut(s)	601, 1652
BstMAI	GTCTC	2 cut(s)	635, 1750
BstMCI	CGRYCG	2 cut(s)	448, 572
BstNI	CCWGG	6 cut(s)	92, 264, 415, 1013, 1176, 1413
BstNSI	RCATGY	3 cut(s)	599, 899, 1465
BstPAI	GACNNNNGTC	4 cut(s)	488, 507, 647, 1226
BstPI	GGTNACC	1 cut(s)	1528
BstSFI	CTRYAG	1 cut(s)	1335
BstSLI	GKGCMC	4 cut(s)	262, 540, 1432, 1495
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	329, 1156, 1160, 1762
BstV2I	GAAGAC	3 cut(s)	219, 225, 488
BstX2I	RGATCY	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	1 cut(s)	366
BsuI	GTATCC	2 cut(s)	1100, 1594
BsuRI	GGCC	4 cut(s)	162, 608, 1498, 1546
BsuTUI	ATCGAT	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	1755
BtrI	CACGTC	1 cut(s)	1050
BtsCI	GGATG	2 cut(s)	1040, 1564
BtsI	GCAGTG	2 cut(s)	1266, 1717
BtsIMutI	CAGTG	7 cut(s)	498, 651, 969, 1119, 1266, 1430, 1717
BtuMI	TCGCGA	1 cut(s)	333
Cac8I	GCNNGC	3 cut(s)	670, 897, 1297
CaiI	CAGNNNCTG	2 cut(s)	1211, 1776
CfoI	GCGC	2 cut(s)	601, 1652
Cfr13I	GGNCC	6 cut(s)	85, 418, 565, 1158, 1544, 1767
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	4 cut(s)	386, 1320, 1326, 1686
CviQI	GTAC	4 cut(s)	386, 1320, 1326, 1686
DdeI	CTNAG	3 cut(s)	996, 1212, 1662
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	72, 804
EarI	CTCTTC	2 cut(s)	72, 804
EciI	GGCGGA	3 cut(s)	1033, 1613, 1736
Eco130I	CCWWGG	3 cut(s)	70, 1481, 1669
Eco32I	GATATC	2 cut(s)	819, 1446
Eco47I	GGWCC	5 cut(s)	85, 418, 565, 1158, 1767
Eco57I	CTGAAG	3 cut(s)	128, 828, 1745
Eco88I	CYCGRG	1 cut(s)	964
Eco91I	GGTNACC	1 cut(s)	1528
EcoO65I	GGTNACC	1 cut(s)	1528
EcoRII	CCWGG	6 cut(s)	90, 262, 413, 1011, 1174, 1411
EcoRV	GATATC	2 cut(s)	819, 1446
EcoT14I	CCWWGG	3 cut(s)	70, 1481, 1669
EcoT22I	ATGCAT	1 cut(s)	1467
ErhI	CCWWGG	3 cut(s)	70, 1481, 1669
FalI	AAGNNNNNCTT	4 cut(s)	499, 531, 1639, 1671
FaqI	GGGAC	4 cut(s)	320, 1130, 1303, 1651
FbaI	TGATCA	2 cut(s)	871, 982
FblI	GTMKAC	1 cut(s)	1230
Fnu4HI	GCNGC	7 cut(s)	318, 350, 1149, 1170, 1203, 1727, 1751
FokI	GGATG	2 cut(s)	1027, 1571
Fsp4HI	GCNGC	7 cut(s)	318, 350, 1149, 1170, 1203, 1727, 1751
FspBI	CTAG	4 cut(s)	1103, 1482, 1578, 1701
GlaI	GCGC	2 cut(s)	600, 1651
GluI	GCNGC	7 cut(s)	318, 350, 1149, 1170, 1203, 1727, 1751
GsaI	CCCAGC	2 cut(s)	55, 1537
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	1 cut(s)	1653
HaeIII	GGCC	4 cut(s)	162, 608, 1498, 1546
HhaI	GCGC	2 cut(s)	601, 1652
Hin1I	GRCGYC	1 cut(s)	1566
Hin6I	GCGC	2 cut(s)	599, 1650
HinP1I	GCGC	2 cut(s)	599, 1650
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	5 cut(s)	5, 300, 322, 697, 917
HphI	GGTGA	7 cut(s)	307, 686, 1355, 1427, 1453, 1540, 1574
Hpy166II	GTNNAC	3 cut(s)	260, 1231, 1312
Hpy188I	TCNGA	4 cut(s)	108, 372, 1438, 1450
Hpy188III	TCNNGA	7 cut(s)	26, 32, 191, 326, 332, 341, 995
Hpy8I	GTNNAC	3 cut(s)	260, 1231, 1312
Hpy99I	CGWCG	1 cut(s)	1094
HpyAV	CCTTC	7 cut(s)	106, 118, 277, 370, 527, 639, 1231
HpyCH4III	ACNGT	3 cut(s)	1112, 1434, 1606
HpyCH4IV	ACGT	2 cut(s)	1049, 1566
HpyF3I	CTNAG	3 cut(s)	996, 1212, 1662
HpySE526I	ACGT	2 cut(s)	1049, 1566
Hsp92I	GRCGYC	1 cut(s)	1566
HspAI	GCGC	2 cut(s)	599, 1650
KpnI	GGTACC	1 cut(s)	1329
Ksp22I	TGATCA	2 cut(s)	871, 982
LmnI	GCTCC	3 cut(s)	1485, 1723, 1747
Lsp1109I	GCAGC	4 cut(s)	329, 1156, 1160, 1762
LweI	GCATC	2 cut(s)	727, 1732
MaeI	CTAG	4 cut(s)	1103, 1482, 1578, 1701
MaeII	ACGT	2 cut(s)	1049, 1566
MaeIII	GTNAC	9 cut(s)	6, 61, 496, 649, 767, 1207, 1510, 1528, 1562
MbiI	CCGCTC	2 cut(s)	1488, 1726
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	6 cut(s)	262, 540, 971, 1002, 1432, 1495
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	7 cut(s)	227, 559, 681, 687, 986, 1071, 1374
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	683, 928
Mox20I	TGGCCA	1 cut(s)	162
Mph1103I	ATGCAT	1 cut(s)	1467
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	4 cut(s)	711, 720, 888, 1608
MslI	CAYNNNNRTG	4 cut(s)	882, 942, 1526, 1740
Msp20I	TGGCCA	1 cut(s)	162
MspA1I	CMGCKG	4 cut(s)	1169, 1295, 1537, 1753
MvaI	CCWGG	6 cut(s)	92, 264, 415, 1013, 1176, 1413
MvnI	CGCG	1 cut(s)	333
NciI	CCSGG	9 cut(s)	394, 434, 553, 758, 1162, 1246, 1278, 1360, 1495
NlaIV	GGNNCC	7 cut(s)	288, 419, 591, 1327, 1492, 1545, 1768
NmuCI	GTSAC	7 cut(s)	6, 61, 496, 649, 1510, 1528, 1562
NruI	TCGCGA	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	1467
NspI	RCATGY	3 cut(s)	599, 899, 1465
PaeI	GCATGC	1 cut(s)	899
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PfeI	GAWTC	4 cut(s)	300, 322, 697, 917
PflMI	CCANNNNNTGG	1 cut(s)	1540
PkrI	GCNGC	7 cut(s)	319, 351, 1150, 1171, 1204, 1728, 1752
Ple19I	CGATCG	1 cut(s)	448
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PshAI	GACNNNNGTC	4 cut(s)	488, 507, 647, 1226
Psp6I	CCWGG	6 cut(s)	90, 262, 413, 1011, 1174, 1411
PspEI	GGTNACC	1 cut(s)	1528
PspFI	CCCAGC	2 cut(s)	51, 1533
PspGI	CCWGG	6 cut(s)	90, 262, 413, 1011, 1174, 1411
PspN4I	GGNNCC	7 cut(s)	288, 419, 591, 1327, 1492, 1545, 1768
PspPI	GGNCC	6 cut(s)	85, 418, 565, 1158, 1544, 1767
PstNI	CAGNNNCTG	2 cut(s)	1211, 1776
PsuI	RGATCY	1 cut(s)	589
PvuI	CGATCG	1 cut(s)	448
PvuII	CAGCTG	2 cut(s)	1169, 1295
RruI	TCGCGA	1 cut(s)	333
RsaI	GTAC	4 cut(s)	387, 1321, 1327, 1687
RsaNI	GTAC	4 cut(s)	386, 1320, 1326, 1686
RseI	CAYNNNNRTG	4 cut(s)	882, 942, 1526, 1740
SaqAI	TTAA	4 cut(s)	711, 720, 888, 1608
SatI	GCNGC	7 cut(s)	318, 350, 1149, 1170, 1203, 1727, 1751
Sau96I	GGNCC	6 cut(s)	85, 418, 565, 1158, 1544, 1767
ScaI	AGTACT	1 cut(s)	1321
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	6 cut(s)	262, 540, 971, 1002, 1432, 1495
SfaNI	GCATC	2 cut(s)	727, 1732
SfcI	CTRYAG	1 cut(s)	1335
SinI	GGWCC	5 cut(s)	85, 418, 565, 1158, 1767
SmiMI	CAYNNNNRTG	4 cut(s)	882, 942, 1526, 1740
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	7 cut(s)	227, 559, 681, 687, 986, 1071, 1374
SspMI	CTAG	4 cut(s)	1103, 1482, 1578, 1701
StyI	CCWWGG	3 cut(s)	70, 1481, 1669
TaaI	ACNGT	3 cut(s)	1112, 1434, 1606
TaiI	ACGT	2 cut(s)	1052, 1569
TaqI	TCGA	5 cut(s)	192, 366, 752, 920, 1268
TaqII	GACCGA	4 cut(s)	533, 582, 586, 1529
TasI	AATT	7 cut(s)	227, 559, 681, 687, 986, 1071, 1374
TatI	WGTACW	1 cut(s)	1319
TauI	GCSGC	3 cut(s)	352, 1205, 1729
TfiI	GAWTC	4 cut(s)	300, 322, 697, 917
Tru1I	TTAA	4 cut(s)	711, 720, 888, 1608
Tru9I	TTAA	4 cut(s)	711, 720, 888, 1608
TscAI	CASTG	7 cut(s)	505, 658, 976, 1126, 1266, 1437, 1717
TseFI	GTSAC	7 cut(s)	6, 61, 496, 649, 1510, 1528, 1562
TseI	GCWGC	4 cut(s)	317, 1148, 1169, 1750
Tsp45I	GTSAC	7 cut(s)	6, 61, 496, 649, 1510, 1528, 1562
TspDTI	ATGAA	7 cut(s)	222, 389, 716, 774, 1029, 1614, 1659
TspGWI	ACGGA	2 cut(s)	788, 1043
TspRI	CASTG	7 cut(s)	505, 658, 976, 1126, 1266, 1437, 1717
Van91I	CCANNNNNTGG	1 cut(s)	1540
VneI	GTGCAC	1 cut(s)	258
VpaK11BI	GGWCC	5 cut(s)	85, 418, 565, 1158, 1767
XapI	RAATTY	3 cut(s)	559, 687, 1374
XceI	RCATGY	3 cut(s)	599, 899, 1465
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1133, 1319
XmaJI	CCTAGG	1 cut(s)	1481
XmiI	GTMKAC	1 cut(s)	1230
XspI	CTAG	4 cut(s)	1103, 1482, 1578, 1701
ZraI	GACGTC	1 cut(s)	1567
ZrmI	AGTACT	1 cut(s)	1321
Zsp2I	ATGCAT	1 cut(s)	1467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.