Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Reverse (-)

3654545 .. 3657438

Gene Structure 2894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGGATACTCATGCAGTAGATTCTCGTGTTGAAGGTGCGGATGAGGAGCCCCATGAGAAGACGTCGGTTTTGAAGAAGGTGAAGGCGAAAGCGAGGAAGTTGAGGGATACTATCACAGGGCAAGGCCAGCACGGCCATGAACCCGAAGGCCATCATACTCCTGATGATCAAGATCTGGATGAGGAAGATGACGAAGATGTAGACGACCCAGAAGTTCAAGGTGCACCAATATATGACTCGGCAGTGAAGAAAACTGATGCTCCTGTGCAAGGAGACATTTTGAAGGAGCCTAAGGTGAATTTCGGAGACACTAGAGCAGGGCATGATGAGCATGAACCTGTAGTTCCAAGGGAGAGGTCTAATGTCAGTGTCAGTGATCCAATGAGGTCTAATGTGCCTGGGCTACATGGAACTACAGGCCATGGTGCAATGCACAACTCTGCCGCGACTAGGAGGACTGATGCTCCTGTGCAAGGAGGCGTTCATTTCGGAGAGACGCACCATGATTATGATCCTGTAGTGCCAAAAGAGATGTCTAATGTCGGAATAAGTGATCCGATGAGGGACTCTGTGCCTGGGCAGAATCGAACTACTACAGGGCATGAGGATCTTTTGGGAGGAGCAAGGACCAAACTGGCTGCTCCAACAACTGGACCTGTTCTTAAGCATGAAGAGCCAAAGGGATTGGTTGATGTAACTGAGGGAGGTCCTCAGACTGGGGTCAAATTGGGGAAGACTGATGTACTAGGGGAAGGGACTCCTGTGCCACAGAGTACCCCTGTCCCTTCTGGAACTCACAGAAGTGCCATGGACGTCGACCCTAGGCAGACATTTGTTTCCGGCCAGGGAGGGCAGTTAGGTCAGTCCAGGGTCAATTTGGACCGACCTAGCGGACTTGGGGAAGATCCTCATTCACCTAAGGCCAATCCTCAAGCTCACACTCCTTCAAATTACAAGACCGAAGTCACTGATCCCACTAAATCTGGTGGTGAGGAAATTGGAGTCACACCAATGCTTCATTCCTTGGATAAGATGAACCTTCAGGGTGATGATCGGCAATACTTGAAGAACGGTGACAAACAAAACCCGTCTACCGGAGGCCATGACCAATTCTCTCCTGATAAACCGTCGAACCAGGGCAGCAGCTACACTGAAAAAATCTCATATGCCACTTCAGCCATTGCCGACAAGGCAATTGCGGCAAAGAATGTAGTTGCTTCCAAGTTGGGATATGGCGGGAATGAGCCTGATCATGATGACTACTCGAGAGGCTATGTTACTGGTGCTGGGAAGTCTGGTTCATCACCTCGGAACAAAGTACTTGATCCCTCTACTAACCAATTCATACCAGCAGAGACTCCACAAGTCCGAGGAACCATCAAACCGGACCACGACACCACAACTGATCAAAAGCCAGTCCAGACAGGCGGATGCTACACTGAGAAGATTTCATCTGCCGGATCTGCCATTGCTGACAAGGCGATATCCGCAAAGAATGTTGTTGCGTCCAAGCTGGGATATGGGGCAAGTGATCAGGTGCATGACAGGGAAGATGTTACTCGCACTAATGTGCAGTCTGGAACAACAGCAGCGGATCAACATGGCAAGACGATTACCTCTACAGTGTATGAGAAGGTTGCCGGAGCAGGGACTGCTGTAATGTCCAAGTTTCAAGGTGGGAGTACTGTTAGTACTGGCAAGGACACTAGTACCGGGGTTGTTAATCAAGCCGGACAGAACAAAGGGGTGTCTGTGAAGGACTATTTCGTGGAGAAGCTGAAGCCCGGAGAAGAGGACAAAGCGCTTTCGGAGGTTATAAGTGAGACATTACACAAGCCTAAGCCGGCTCTTAAGCAAGAGACAGAGTACTCTGCTAGTGCTAGGCCCAAGGGGAAGGTGACGGAGTCGGCGGAGGTGAGGCAGCGTTTGGGGAATACCGAGGGAATGAGAATTTTGTGGTGGACAAGATTGAGGTTGCTGTTGGTTCGATGCTTGGTGGTACTGGTAAGAGTGATGAAGAACGTAGGCAAGGTCTCTCTAGATCTGCTGCTACCGGGGAGGAAGATTGACGCGGTGTTTGTGTGGTGGAGCACCAGAGGCTACAGGAATCCGGCAACTGAGGGAGGGCTACTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

712

Amino Acids

76.12

Weight (kDa)

6.07

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	17 - 82	7.6e-23	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	290 - 349	1.9e-28	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	387 - 413	1.2e-14	CAP160 repeat
CAP160	PF07918	483 - 508	1.5e-13	CAP160 repeat
LTI65_PGEED	PF23399	581 - 610	1e-17	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1817
AatII	GACGTC	2 cut(s)	65, 816
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccI	GTMKAC	3 cut(s)	201, 816, 1091
AccII	CGCG	2 cut(s)	446, 2072
AclWI	GGATC	9 cut(s)	371, 506, 548, 615, 899, 965, 1319, 1468, 1602
AcoI	YGGCCR	2 cut(s)	133, 841
AcsI	RAATTY	2 cut(s)	298, 1950
AcuI	CTGAAG	3 cut(s)	1025, 1158, 1799
AcyI	GRCGYC	2 cut(s)	62, 813
AfaI	GTAC	8 cut(s)	744, 775, 1320, 1684, 1693, 1711, 1868, 2001
AfeI	AGCGCT	1 cut(s)	1803
AfiI	CCNNNNNNNGG	7 cut(s)	269, 450, 473, 650, 716, 1094, 1647
AflII	CTTAAG	2 cut(s)	662, 1850
AgsI	TTSAA	7 cut(s)	32, 73, 218, 283, 948, 1066, 1673
AhlI	ACTAGT	1 cut(s)	1706
AjnI	CCWGG	5 cut(s)	397, 574, 843, 866, 1134
AjuI	GAANNNNNNNTTGG	2 cut(s)	1003, 1035
AleI	CACNNNNGTG	2 cut(s)	801, 1568
AloI	GAACNNNNNNTCC	2 cut(s)	1282, 1314
AluBI	AGCT	4 cut(s)	935, 1146, 1513, 1777
AluI	AGCT	4 cut(s)	935, 1146, 1513, 1777
Alw21I	GWGCWC	2 cut(s)	226, 2093
Alw26I	GTCTC	7 cut(s)	267, 300, 488, 1349, 1817, 1853, 2038
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	9 cut(s)	371, 506, 548, 615, 899, 965, 1319, 1468, 1602
AlwNI	CAGNNNCTG	1 cut(s)	1652
Ama87I	CYCGRG	1 cut(s)	1264
Aor51HI	AGCGCT	1 cut(s)	1803
AoxI	GGCC	8 cut(s)	124, 133, 148, 418, 841, 921, 1099, 1883
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	6 cut(s)	638, 1140, 1143, 1589, 1921, 2047
ApoI	RAATTY	2 cut(s)	298, 1950
ArsI	GACNNNNNNTTYG	6 cut(s)	52, 84, 518, 550, 2060, 2092
AspA2I	CCTAGG	1 cut(s)	821
AspLEI	GCGC	1 cut(s)	1804
AspS9I	GGNCC	6 cut(s)	627, 653, 707, 880, 1387, 1884
AsuC2I	CCSGG	3 cut(s)	1714, 1785, 2055
AsuHPI	GGTGA	9 cut(s)	91, 307, 906, 1001, 1058, 1085, 1296, 1909, 1927
AvaI	CYCGRG	1 cut(s)	1264
AvaII	GGWCC	5 cut(s)	627, 653, 707, 880, 1387
AvrII	CCTAGG	1 cut(s)	821
AxyI	CCTNAGG	2 cut(s)	291, 918
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	2 cut(s)	1693, 1726
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	65, 740
Bbv12I	GWGCWC	2 cut(s)	226, 2093
BbvI	GCAGC	6 cut(s)	625, 1152, 1155, 1601, 1933, 2034
BccI	CCATC	2 cut(s)	159, 1385
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	5 cut(s)	399, 576, 845, 868, 1136
BciVI	GTATCC	1 cut(s)	100
BclI	TGATCA	4 cut(s)	166, 1249, 1405, 1531
BcnI	CCSGG	3 cut(s)	1714, 1785, 2055
BcoDI	GTCTC	7 cut(s)	267, 300, 488, 1349, 1817, 1853, 2038
BcuI	ACTAGT	1 cut(s)	1706
BfaI	CTAG	9 cut(s)	312, 450, 746, 822, 888, 1707, 1875, 1881, 2039
BfmI	CTRYAG	6 cut(s)	339, 414, 516, 594, 1620, 2101
BfoI	RGCGCY	1 cut(s)	1805
BfrI	CTTAAG	2 cut(s)	662, 1850
BfuI	GTATCC	1 cut(s)	100
BglI	GCCNNNNNGGC	2 cut(s)	132, 1190
BglII	AGATCT	2 cut(s)	172, 2041
BisI	GCNGC	8 cut(s)	444, 639, 1141, 1144, 1200, 1590, 1922, 2048
BlnI	CCTAGG	1 cut(s)	821
BlsI	GCNGC	8 cut(s)	445, 640, 1142, 1145, 1201, 1591, 1923, 2049
BmcAI	AGTACT	4 cut(s)	1320, 1684, 1693, 1868
Bme1390I	CCNGG	8 cut(s)	399, 576, 845, 868, 1136, 1714, 1785, 2055
Bme18I	GGWCC	5 cut(s)	627, 653, 707, 880, 1387
BmeT110I	CYCGRG	1 cut(s)	1264
BmgT120I	GGNCC	6 cut(s)	627, 653, 707, 880, 1387, 1884
BmiI	GGNNCC	3 cut(s)	48, 288, 1375
BmrFI	CCNGG	8 cut(s)	399, 576, 845, 868, 1136, 1714, 1785, 2055
BmrI	ACTGGG	1 cut(s)	726
BmsI	GCATC	4 cut(s)	247, 451, 1421, 1979
BmuI	ACTGGG	1 cut(s)	726
BoxI	GACNNNNGTC	2 cut(s)	719, 962
BpiI	GAAGAC	2 cut(s)	65, 740
Bpu10I	CCTNAGC	1 cut(s)	1839
BpuEI	CTTGAG	1 cut(s)	915
BpuMI	CCSGG	3 cut(s)	1714, 1785, 2055
BsaBI	GATNNNNATC	2 cut(s)	171, 510
BsaHI	GRCGYC	2 cut(s)	62, 813
BsaI	GGTCTC	1 cut(s)	2038
BsaWI	WCCGGW	2 cut(s)	1094, 1384
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 448, 478
Bsc4I	CCNNNNNNNGG	7 cut(s)	269, 450, 473, 650, 716, 1094, 1647
Bse118I	RCCGGY	1 cut(s)	1843
Bse1I	ACTGG	7 cut(s)	639, 655, 721, 1285, 1415, 1699, 2007
Bse21I	CCTNAGG	2 cut(s)	291, 918
Bse3DI	GCAATG	3 cut(s)	435, 1179, 1467
Bse8I	GATNNNNATC	2 cut(s)	171, 510
BseBI	CCWGG	5 cut(s)	399, 576, 845, 868, 1136
BseGI	GGATG	3 cut(s)	46, 184, 1436
BseJI	GATNNNNATC	2 cut(s)	171, 510
BseLI	CCNNNNNNNGG	7 cut(s)	269, 450, 473, 650, 716, 1094, 1647
BseMI	GCAATG	3 cut(s)	435, 1179, 1467
BseMII	CTCAG	4 cut(s)	690, 725, 1431, 2109
BseNI	ACTGG	7 cut(s)	639, 655, 721, 1285, 1415, 1699, 2007
BseRI	GAGGAG	2 cut(s)	59, 633
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	6 cut(s)	625, 1152, 1155, 1601, 1933, 2034
BseYI	CCCAGC	2 cut(s)	1286, 1513
BsgI	GTGCAG	1 cut(s)	1592
Bsh1236I	CGCG	2 cut(s)	446, 2072
BshFI	GGCC	8 cut(s)	126, 135, 150, 420, 843, 923, 1101, 1885
BsiHKAI	GWGCWC	2 cut(s)	226, 2093
BsiHKCI	CYCGRG	1 cut(s)	1264
BslFI	GGGAC	4 cut(s)	578, 767, 769, 1663
BslI	CCNNNNNNNGG	7 cut(s)	269, 450, 473, 650, 716, 1094, 1647
BsmAI	GTCTC	7 cut(s)	267, 300, 488, 1349, 1817, 1853, 2038
BsmBI	CGTCTC	1 cut(s)	488
BsmFI	GGGAC	4 cut(s)	578, 767, 769, 1663
BsnI	GGCC	8 cut(s)	126, 135, 150, 420, 843, 923, 1101, 1885
Bso31I	GGTCTC	1 cut(s)	2038
BsoBI	CYCGRG	1 cut(s)	1264
Bsp1286I	GDGCHC	3 cut(s)	51, 226, 2093
Bsp19I	CCATGG	2 cut(s)	421, 807
BspANI	GGCC	8 cut(s)	126, 135, 150, 420, 843, 923, 1101, 1885
BspCNI	CTCAG	4 cut(s)	691, 724, 1432, 2110
BspFNI	CGCG	2 cut(s)	446, 2072
BspHI	TCATGA	1 cut(s)	1252
BspLI	GGNNCC	3 cut(s)	48, 288, 1375
BspPI	GGATC	9 cut(s)	371, 506, 548, 615, 899, 965, 1319, 1468, 1602
BspQI	GCTCTTC	1 cut(s)	666
BspTI	CTTAAG	2 cut(s)	662, 1850
BspTNI	GGTCTC	1 cut(s)	2038
BsrDI	GCAATG	3 cut(s)	435, 1179, 1467
BsrFI	RCCGGY	1 cut(s)	1843
BsrI	ACTGG	7 cut(s)	639, 655, 721, 1285, 1415, 1699, 2007
BssAI	RCCGGY	1 cut(s)	1843
BssNI	GRCGYC	2 cut(s)	62, 813
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	6 cut(s)	347, 421, 807, 821, 1023, 1887
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	5 cut(s)	399, 576, 845, 868, 1136
Bst4CI	ACNGT	4 cut(s)	1073, 1128, 1624, 1687
Bst6I	CTCTTC	2 cut(s)	666, 1785
BstACI	GRCGYC	2 cut(s)	62, 813
BstAFI	CTTAAG	2 cut(s)	662, 1850
BstAPI	GCANNNNNTGC	1 cut(s)	1652
BstC8I	GCNNGC	2 cut(s)	128, 1845
BstDEI	CTNAG	7 cut(s)	291, 699, 711, 918, 1440, 1839, 2118
BstDSI	CCRYGG	2 cut(s)	421, 807
BstENI	CCTNNNNNAGG	2 cut(s)	267, 471
BstF5I	GGATG	3 cut(s)	46, 184, 1436
BstFNI	CGCG	2 cut(s)	446, 2072
BstH2I	RGCGCY	1 cut(s)	1805
BstHHI	GCGC	1 cut(s)	1804
BstMAI	GTCTC	7 cut(s)	267, 300, 488, 1349, 1817, 1853, 2038
BstNI	CCWGG	5 cut(s)	399, 576, 845, 868, 1136
BstPAI	GACNNNNGTC	2 cut(s)	719, 962
BstSCI	CCNGG	8 cut(s)	397, 574, 843, 866, 1134, 1712, 1783, 2053
BstSFI	CTRYAG	6 cut(s)	339, 414, 516, 594, 1620, 2101
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	2 cut(s)	446, 2072
BstV1I	GCAGC	6 cut(s)	625, 1152, 1155, 1601, 1933, 2034
BstV2I	GAAGAC	2 cut(s)	65, 740
BstX2I	RGATCY	5 cut(s)	172, 607, 904, 1460, 2041
BstYI	RGATCY	5 cut(s)	172, 607, 904, 1460, 2041
Bsu36I	CCTNAGG	2 cut(s)	291, 918
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	8 cut(s)	126, 135, 150, 420, 843, 923, 1101, 1885
BtgI	CCRYGG	2 cut(s)	421, 807
BtsCI	GGATG	3 cut(s)	46, 184, 1436
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	7 cut(s)	249, 373, 379, 966, 1149, 1437, 1629
Cac8I	GCNNGC	2 cut(s)	128, 1845
CaiI	CAGNNNCTG	1 cut(s)	1652
CciI	TCATGA	1 cut(s)	1252
CfoI	GCGC	1 cut(s)	1804
Cfr10I	RCCGGY	1 cut(s)	1843
Cfr13I	GGNCC	6 cut(s)	627, 653, 707, 880, 1387, 1884
CseI	GACGC	3 cut(s)	505, 1494, 2078
Csp6I	GTAC	8 cut(s)	743, 774, 1319, 1683, 1692, 1710, 1867, 2000
CviQI	GTAC	8 cut(s)	743, 774, 1319, 1683, 1692, 1710, 1867, 2000
DdeI	CTNAG	7 cut(s)	291, 699, 711, 918, 1440, 1839, 2118
EaeI	YGGCCR	2 cut(s)	133, 841
Eam1104I	CTCTTC	2 cut(s)	666, 1785
EarI	CTCTTC	2 cut(s)	666, 1785
EciI	GGCGGA	2 cut(s)	1443, 1925
Eco130I	CCWWGG	6 cut(s)	347, 421, 807, 821, 1023, 1887
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	2038
Eco32I	GATATC	1 cut(s)	1485
Eco47I	GGWCC	5 cut(s)	627, 653, 707, 880, 1387
Eco47III	AGCGCT	1 cut(s)	1803
Eco57I	CTGAAG	3 cut(s)	1025, 1158, 1799
Eco81I	CCTNAGG	2 cut(s)	291, 918
Eco88I	CYCGRG	1 cut(s)	1264
EcoNI	CCTNNNNNAGG	2 cut(s)	267, 471
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	5 cut(s)	397, 574, 843, 866, 1134
EcoRV	GATATC	1 cut(s)	1485
EcoT14I	CCWWGG	6 cut(s)	347, 421, 807, 821, 1023, 1887
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	6 cut(s)	347, 421, 807, 821, 1023, 1887
Esp3I	CGTCTC	1 cut(s)	488
FaqI	GGGAC	4 cut(s)	578, 767, 769, 1663
FauI	CCCGC	1 cut(s)	1229
FauNDI	CATATG	1 cut(s)	1165
FbaI	TGATCA	4 cut(s)	166, 1249, 1405, 1531
FblI	GTMKAC	3 cut(s)	201, 816, 1091
Fnu4HI	GCNGC	8 cut(s)	444, 639, 1141, 1144, 1200, 1590, 1922, 2048
FokI	GGATG	3 cut(s)	53, 191, 1443
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	8 cut(s)	444, 639, 1141, 1144, 1200, 1590, 1922, 2048
FspBI	CTAG	9 cut(s)	312, 450, 746, 822, 888, 1707, 1875, 1881, 2039
GlaI	GCGC	1 cut(s)	1803
GluI	GCNGC	8 cut(s)	444, 639, 1141, 1144, 1200, 1590, 1922, 2048
GsaI	CCCAGC	2 cut(s)	1290, 1517
HaeII	RGCGCY	1 cut(s)	1805
HaeIII	GGCC	8 cut(s)	126, 135, 150, 420, 843, 923, 1101, 1885
HgaI	GACGC	3 cut(s)	505, 1494, 2078
HhaI	GCGC	1 cut(s)	1804
Hin1I	GRCGYC	2 cut(s)	62, 813
Hin6I	GCGC	1 cut(s)	1802
HinP1I	GCGC	1 cut(s)	1802
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HinfI	GANTC	9 cut(s)	20, 236, 566, 583, 757, 1002, 1357, 1904, 2107
HphI	GGTGA	9 cut(s)	91, 307, 906, 1001, 1058, 1085, 1296, 1909, 1927
Hpy166II	GTNNAC	5 cut(s)	202, 224, 817, 1092, 1962
Hpy188I	TCNGA	8 cut(s)	305, 491, 545, 558, 714, 1311, 1370, 1810
Hpy8I	GTNNAC	5 cut(s)	202, 224, 817, 1092, 1962
Hpy99I	CGWCG	3 cut(s)	67, 818, 1132
HpyCH4III	ACNGT	4 cut(s)	1073, 1128, 1624, 1687
HpyCH4IV	ACGT	3 cut(s)	62, 813, 2022
HpyCH4V	TGCA	8 cut(s)	14, 224, 268, 428, 433, 472, 1540, 1573
HpyF3I	CTNAG	7 cut(s)	291, 699, 711, 918, 1440, 1839, 2118
HpySE526I	ACGT	3 cut(s)	62, 813, 2022
Hsp92I	GRCGYC	2 cut(s)	62, 813
HspAI	GCGC	1 cut(s)	1802
KroI	GCCGGC	1 cut(s)	1843
KroNI	GCCGGC	1 cut(s)	1845
Ksp22I	TGATCA	4 cut(s)	166, 1249, 1405, 1531
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	8 cut(s)	46, 265, 286, 469, 620, 646, 1643, 2088
Lsp1109I	GCAGC	6 cut(s)	625, 1152, 1155, 1601, 1933, 2034
LweI	GCATC	4 cut(s)	247, 451, 1421, 1979
MaeI	CTAG	9 cut(s)	312, 450, 746, 822, 888, 1707, 1875, 1881, 2039
MaeII	ACGT	3 cut(s)	62, 813, 2022
MaeIII	GTNAC	7 cut(s)	694, 964, 1003, 1073, 1276, 1555, 1897
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	5 cut(s)	172, 607, 904, 1460, 2041
MhlI	GDGCHC	3 cut(s)	51, 226, 2093
MluCI	AATT	9 cut(s)	298, 725, 874, 949, 996, 1109, 1194, 1340, 1950
MlyI	GAGTC	6 cut(s)	230, 560, 751, 1011, 1351, 1913
MmeI	TCCRAC	2 cut(s)	523, 668
MroNI	GCCGGC	1 cut(s)	1843
MseI	TTAA	3 cut(s)	663, 1722, 1851
MslI	CAYNNNNRTG	5 cut(s)	135, 507, 801, 1010, 1568
MspA1I	CMGCKG	1 cut(s)	1592
MspCI	CTTAAG	2 cut(s)	662, 1850
MspR9I	CCNGG	8 cut(s)	399, 576, 845, 868, 1136, 1714, 1785, 2055
MunI	CAATTG	1 cut(s)	1194
MvaI	CCWGG	5 cut(s)	399, 576, 845, 868, 1136
MvnI	CGCG	2 cut(s)	446, 2072
NaeI	GCCGGC	1 cut(s)	1845
NciI	CCSGG	3 cut(s)	1714, 1785, 2055
NcoI	CCATGG	2 cut(s)	421, 807
NdeI	CATATG	1 cut(s)	1165
NgoMIV	GCCGGC	1 cut(s)	1843
NlaIV	GGNNCC	3 cut(s)	48, 288, 1375
NmeAIII	GCCGAG	1 cut(s)	218
NmuCI	GTSAC	4 cut(s)	964, 1003, 1073, 1897
OliI	CACNNNNGTG	2 cut(s)	801, 1568
PaeR7I	CTCGAG	1 cut(s)	1264
PagI	TCATGA	1 cut(s)	1252
PciSI	GCTCTTC	1 cut(s)	666
PdiI	GCCGGC	1 cut(s)	1845
PfeI	GAWTC	3 cut(s)	20, 583, 2107
PflFI	GACNNNGTC	1 cut(s)	1903
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	8 cut(s)	445, 640, 1142, 1145, 1201, 1591, 1923, 2049
PleI	GAGTC	6 cut(s)	230, 560, 751, 1010, 1351, 1912
PpsI	GAGTC	6 cut(s)	230, 560, 751, 1010, 1351, 1912
PpuMI	RGGWCCY	1 cut(s)	707
PshAI	GACNNNNGTC	2 cut(s)	719, 962
PsiI	TTATAA	1 cut(s)	1817
Psp5II	RGGWCCY	1 cut(s)	707
Psp6I	CCWGG	5 cut(s)	397, 574, 843, 866, 1134
PspFI	CCCAGC	2 cut(s)	1286, 1513
PspGI	CCWGG	5 cut(s)	397, 574, 843, 866, 1134
PspN4I	GGNNCC	3 cut(s)	48, 288, 1375
PspPI	GGNCC	6 cut(s)	627, 653, 707, 880, 1387, 1884
PspPPI	RGGWCCY	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	1652
PsuI	RGATCY	5 cut(s)	172, 607, 904, 1460, 2041
PsyI	GACNNNGTC	1 cut(s)	1903
RsaI	GTAC	8 cut(s)	744, 775, 1320, 1684, 1693, 1711, 1868, 2001
RsaNI	GTAC	8 cut(s)	743, 774, 1319, 1683, 1692, 1710, 1867, 2000
RseI	CAYNNNNRTG	5 cut(s)	135, 507, 801, 1010, 1568
SalI	GTCGAC	1 cut(s)	815
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	3 cut(s)	663, 1722, 1851
SatI	GCNGC	8 cut(s)	444, 639, 1141, 1144, 1200, 1590, 1922, 2048
Sau96I	GGNCC	6 cut(s)	627, 653, 707, 880, 1387, 1884
ScaI	AGTACT	4 cut(s)	1320, 1684, 1693, 1868
SchI	GAGTC	6 cut(s)	230, 560, 751, 1011, 1351, 1913
ScrFI	CCNGG	8 cut(s)	399, 576, 845, 868, 1136, 1714, 1785, 2055
SduI	GDGCHC	3 cut(s)	51, 226, 2093
SfaNI	GCATC	4 cut(s)	247, 451, 1421, 1979
SfcI	CTRYAG	6 cut(s)	339, 414, 516, 594, 1620, 2101
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	1264
SinI	GGWCC	5 cut(s)	627, 653, 707, 880, 1387
SlaI	CTCGAG	1 cut(s)	1264
SmiMI	CAYNNNNRTG	5 cut(s)	135, 507, 801, 1010, 1568
SmlI	CTYRAG	4 cut(s)	662, 930, 1264, 1850
SmoI	CTYRAG	4 cut(s)	662, 930, 1264, 1850
SpeI	ACTAGT	1 cut(s)	1706
Sse9I	AATT	9 cut(s)	298, 725, 874, 949, 996, 1109, 1194, 1340, 1950
SspMI	CTAG	9 cut(s)	312, 450, 746, 822, 888, 1707, 1875, 1881, 2039
StyD4I	CCNGG	8 cut(s)	397, 574, 843, 866, 1134, 1712, 1783, 2053
StyI	CCWWGG	6 cut(s)	347, 421, 807, 821, 1023, 1887
TaaI	ACNGT	4 cut(s)	1073, 1128, 1624, 1687
TaiI	ACGT	3 cut(s)	65, 816, 2025
TaqI	TCGA	5 cut(s)	586, 816, 1130, 1265, 1987
TaqII	GACCGA	2 cut(s)	897, 974
TasI	AATT	9 cut(s)	298, 725, 874, 949, 996, 1109, 1194, 1340, 1950
TatI	WGTACW	5 cut(s)	742, 1318, 1682, 1691, 1866
TauI	GCSGC	2 cut(s)	446, 1202
TfiI	GAWTC	3 cut(s)	20, 583, 2107
Tru1I	TTAA	3 cut(s)	663, 1722, 1851
Tru9I	TTAA	3 cut(s)	663, 1722, 1851
TscAI	CASTG	7 cut(s)	249, 373, 379, 973, 1156, 1444, 1629
TseFI	GTSAC	4 cut(s)	964, 1003, 1073, 1897
TseI	GCWGC	6 cut(s)	638, 1140, 1143, 1589, 1921, 2047
Tsp45I	GTSAC	4 cut(s)	964, 1003, 1073, 1897
TspGWI	ACGGA	1 cut(s)	1916
TspRI	CASTG	7 cut(s)	249, 373, 379, 973, 1156, 1444, 1629
Tth111I	GACNNNGTC	1 cut(s)	1903
Van91I	CCANNNNNTGG	1 cut(s)	650
Vha464I	CTTAAG	2 cut(s)	662, 1850
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	5 cut(s)	627, 653, 707, 880, 1387
XagI	CCTNNNNNAGG	2 cut(s)	267, 471
XapI	RAATTY	2 cut(s)	298, 1950
XbaI	TCTAGA	1 cut(s)	2038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	874
XhoI	CTCGAG	1 cut(s)	1264
XmaJI	CCTAGG	1 cut(s)	821
XmiI	GTMKAC	3 cut(s)	201, 816, 1091
XspI	CTAG	9 cut(s)	312, 450, 746, 822, 888, 1707, 1875, 1881, 2039
ZraI	GACGTC	2 cut(s)	63, 814
ZrmI	AGTACT	4 cut(s)	1320, 1684, 1693, 1868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.