Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Reverse (-)

3611760 .. 3614636

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026530

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGGATACTCATGCAGTACATTCTAGTGTTGAAGGTGGGGATGAGGAGCACCACGAGAAGACGTCGGTTTTGAAGAAGGTGAAGGCGAGAGCGAGGAAGTTCAGGGATACTATCACAGGGTATGGCCGTCAAGGCCATGAACCTGAAGGCTATCATACTCCTGATGATCATGATCTGGATCAGGAAGATGACGAAGATGTAGACGACCCAGATGTTCATGCTGCACCAATAGTACATGACTCGGCAGTTAAGAAAACTGATGCTCCTTTGCAAGGAGACGTTTTGAAGCTGCCTGTGGTGAATTTCGGGGACAATAGAGCGGGGCATGATGCGCATGAACCTGTAGTTCCAAGCGAGAGGTCTAATGTCAATGTCAGTGATCCATTGAGGTCTAATGTGCCTGAGCTACATGGAACTACAGACCATGGTGCAATGCACAACTCTGCAGCGACTAGGAGGGCTGATGCTCCTGTGCAAGGGGGCACTCGTTTCGGAGAGACGCACCATGAATATGATCCTGTAGTGCCAAAAGAGAGGTCTAATGTCGGAATAAGTGATCCGGTGAGGGACTCTGTGCCTGGGCAAAATCGAACTACTACAGGGCATGAAGAGCTTTTGGGAGGAGCAAGGACCAAACCGAGTGGTCCAACTACTGGATCTGTTCTTAAGCATGAAGAGCCAAAGGGATTGGTTGATGTAATTGGGGGAGGTTCTCATGCGCCGCACAACACTATTAACGCGGATGTTGACCCAGGTAAGACTAGGGTCAAATTGGGGAAGACTGATGCACTAGGGGAAGGGACTCCTGTGCCACAGGGTACCTCTGTTTCTTCTGGAACTCACAGAAGTGACATGGACGTCGACCCTAGGCAGACATTTGTTTCCGGGCAGGGAGGGCATTTAGGTGAGTCCAGGGTCGATTTGGACCGACCTACAGGACTTGAGGAAGATCCTCATTCATCTAAGGCCAATCCTCAAGCTTACACTCCTTCAAATTACGAGACCAAAGTCACTCATCCCACCAAACCGAGTGGTCCAACTACTGGATCTGTTCTTAAGCATGAAGAGCCAAAGGGATTGGTTGATGTAATTGGGGAAGGTTCTCACGGGCCGCACAACACTATTACCACGGATGTTGACCCCGGTAAGACTTTTGGCTCCGGGCAAGGAGAGCATTTAGTTCAGACTAGGGTCACATTGGGGAAGACTGATGTACTAGGGGAAGGGACTCCTGTGCCACCGACTACCCCTGTTTCTTCTGGAACTCACAGTAATGAAATGGACGTCGACCCTAGGCAGACATTTGTTTCCGGGCAGGGAGGGCATTTAGGTGAGTCCAGGGTCAATGTGGACCGATCTATAGGACTTGAGGAAGCTCATTCACCTAAGGCCAATCCTCAAGCTTACACTCCTTCAAATTACGAGACCAAAGTCACTGATCCCACCAAATCTGGTGGTGAGGAAATTGGAGTCACACCGATGCTTCATTCCTTCGATAAGATGAACCTTGACGGTGATGATCGCCAACACTTGAAGAACGGTGCCAAACAAAACCCGTCTGCCGGAAGCCATGACCAATTCTCTCCTGATAAACCGTCGAACCAGGGCAGCAGCTACGCTGAAAAAATGTCATATGCCACTTCAGCCATTGCCGACACAGCAATTTCGGCAAAGAATGCTGTTGCTTCCAAGTTGGGATATGGCGGGAACGAGCCTGATCATGATGACTACTCGAAAGGCTATATTACTGGTGCTGGGAAGTCTGGTTCGTCACCACGGAACAAAGTACTTGATGCCTCTACTAACCAATTCAGACCAGCAGAGACTCCACAAGTCCAAGGAACCATCAGACCGGACCATGACACCACAACTGATCAAAAGCCAGTGCAGACAGGCGGAAGCTACACTGAGAGGATTTCATGTACCGGATCCGCCATTGCTGGCAAGGCGATTTCCGCAAAGAATGTTATTGCTTCCAAGCTGGGATATGGGGCAACTGATCAGGTGCATGACAGGGAAGATGTTACTCGCACTAATGTGCAGTCTGGGACATCGGCAGCGGACGGCAAGACGATTACCTCTAATCAAGCCGGACAGGACAAAGGGGTATCTGTGAAGGACTATTTCGTGGAGAAGCTGAGGCCCGGAGAGGAGGACAAAGCCCTTTCGGAGGTTATAAGTGAGACAATACACAAGCCTAAGCCGGGTGTTAAGCAAGAGACTGGGGACTCTGCTAGTGCTAGGCCCAAGGGGAAGGTGACGGAGTCGGCGGAGGTGAGGCAGCGTTTGGGGAATACCGAGGGGAATGAGAATTTTGTGGTGGACAAGATTGAGGATACTGTTAGTTCGATGCTTGGTGGTACTGGTAAGACTGATGAAGAACGTGGGCAAGGTCTCTCTAGATCTGCTCCTACCGGGGAGGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

810

Amino Acids

85.68

Weight (kDa)

5.48

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	16 - 83	4e-19	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	305 - 344	3.6e-15	LTI65/LTI78 NYQTKV repeat
LTI65_LTI78_NYQTKV	PF23402	447 - 505	7.4e-26	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	544 - 569	1e-11	CAP160 repeat
CAP160	PF07918	639 - 664	2e-09	CAP160 repeat
LTI65_PGEED	PF23399	700 - 730	4.6e-19	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2177
AasI	GACNNNNNNGTC	1 cut(s)	857
AatII	GACGTC	3 cut(s)	65, 861, 1287
Acc16I	TGCGCA	1 cut(s)	333
Acc65I	GGTACC	1 cut(s)	818
AccB1I	GGYRCC	2 cut(s)	818, 1541
AccB7I	CCANNNNNTGG	2 cut(s)	653, 1043
AccBSI	CCGCTC	1 cut(s)	320
AccI	GTMKAC	3 cut(s)	201, 861, 1287
AccII	CGCG	1 cut(s)	740
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	301, 2311
AcuI	CTGAAG	2 cut(s)	165, 1626
AcyI	GRCGYC	3 cut(s)	62, 858, 1284
AfaI	GTAC	7 cut(s)	18, 234, 820, 1215, 1788, 1924, 2362
AfiI	CCNNNNNNNGG	7 cut(s)	272, 476, 653, 1043, 1562, 2170, 2204
AflII	CTTAAG	2 cut(s)	665, 1055
AgsI	TTSAA	6 cut(s)	32, 73, 286, 993, 1416, 1534
AjnI	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
AleI	CACNNNNGTG	2 cut(s)	846, 2036
AloI	GAACNNNNNNTCC	2 cut(s)	1750, 1782
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	8 cut(s)	270, 491, 995, 1418, 1817, 2177, 2213, 2399
AoxI	GGCC	7 cut(s)	124, 133, 966, 1109, 1389, 2141, 2243
ApeKI	GCWGC	7 cut(s)	221, 289, 446, 1608, 1611, 2057, 2281
ApoI	RAATTY	2 cut(s)	301, 2311
ArsI	GACNNNNNNTTYG	4 cut(s)	52, 84, 521, 553
Asp718I	GGTACC	1 cut(s)	818
AspA2I	CCTAGG	2 cut(s)	866, 1292
AspLEI	GCGC	2 cut(s)	334, 721
AspS9I	GGNCC	9 cut(s)	630, 644, 925, 1034, 1109, 1351, 1855, 2142, 2244
AsuC2I	CCSGG	7 cut(s)	886, 1143, 1162, 1312, 2145, 2205, 2416
AvaII	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
AvrII	CCTAGG	2 cut(s)	866, 1292
AxyI	CCTNAGG	1 cut(s)	1386
BaeGI	GKGCMC	1 cut(s)	485
BaeI	ACNNNNGTAYC	2 cut(s)	810, 843
BamHI	GGATCC	1 cut(s)	1928
BanI	GGYRCC	2 cut(s)	818, 1541
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	3 cut(s)	65, 785, 1211
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	2138
BbvI	GCAGC	7 cut(s)	208, 276, 458, 1620, 1623, 2069, 2293
BccI	CCATC	1 cut(s)	1853
BceAI	ACGGC	2 cut(s)	111, 2080
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
BciVI	GTATCC	2 cut(s)	100, 2329
BclI	TGATCA	4 cut(s)	166, 1717, 1873, 1999
BcnI	CCSGG	7 cut(s)	886, 1143, 1162, 1312, 2145, 2205, 2416
BcoDI	GTCTC	8 cut(s)	270, 491, 995, 1418, 1817, 2177, 2213, 2399
BfmI	CTRYAG	7 cut(s)	342, 417, 444, 519, 597, 933, 1359
BfrI	CTTAAG	2 cut(s)	665, 1055
BfuI	GTATCC	2 cut(s)	100, 2329
BglI	GCCNNNNNGGC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	2402
BisI	GCNGC	9 cut(s)	222, 290, 447, 722, 1112, 1609, 1612, 2058, 2282
BlnI	CCTAGG	2 cut(s)	866, 1292
BlsI	GCNGC	9 cut(s)	223, 291, 448, 723, 1113, 1610, 1613, 2059, 2283
BmcAI	AGTACT	1 cut(s)	1788
Bme18I	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
BmgT120I	GGNCC	9 cut(s)	630, 644, 925, 1034, 1109, 1351, 1855, 2142, 2244
BmiI	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
BmrI	ACTGGG	1 cut(s)	2232
BmsI	GCATC	7 cut(s)	250, 319, 454, 775, 1470, 1783, 2340
BmuI	ACTGGG	1 cut(s)	2232
BoxI	GACNNNNGTC	4 cut(s)	764, 1007, 1190, 1430
BpiI	GAAGAC	3 cut(s)	65, 785, 1211
Bpu10I	CCTNAGC	3 cut(s)	402, 2138, 2199
BpuEI	CTTGAG	4 cut(s)	960, 962, 1383, 1388
BpuMI	CCSGG	7 cut(s)	886, 1143, 1162, 1312, 2145, 2205, 2416
BsaBI	GATNNNNATC	2 cut(s)	171, 177
BsaHI	GRCGYC	3 cut(s)	62, 858, 1284
BsaI	GGTCTC	3 cut(s)	995, 1418, 2399
BsaWI	WCCGGW	3 cut(s)	559, 1852, 1925
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	7 cut(s)	272, 476, 653, 1043, 1562, 2170, 2204
Bse1I	ACTGG	6 cut(s)	658, 1048, 1753, 1883, 2227, 2368
Bse21I	CCTNAGG	1 cut(s)	1386
Bse3DI	GCAATG	3 cut(s)	438, 1647, 1935
Bse8I	GATNNNNATC	2 cut(s)	171, 177
BseBI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
BseGI	GGATG	4 cut(s)	46, 748, 1015, 1138
BseJI	GATNNNNATC	2 cut(s)	171, 177
BseLI	CCNNNNNNNGG	7 cut(s)	272, 476, 653, 1043, 1562, 2170, 2204
BseMI	GCAATG	3 cut(s)	438, 1647, 1935
BseMII	CTCAG	3 cut(s)	393, 1899, 2129
BseNI	ACTGG	6 cut(s)	658, 1048, 1753, 1883, 2227, 2368
BseRI	GAGGAG	3 cut(s)	59, 636, 2165
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	7 cut(s)	208, 276, 458, 1620, 1623, 2069, 2293
BseYI	CCCAGC	2 cut(s)	1754, 1981
BsgI	GTGCAG	3 cut(s)	207, 1907, 2060
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	7 cut(s)	126, 135, 968, 1111, 1391, 2143, 2245
BshNI	GGYRCC	2 cut(s)	818, 1541
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	6 cut(s)	323, 581, 814, 1240, 2062, 2240
BslI	CCNNNNNNNGG	7 cut(s)	272, 476, 653, 1043, 1562, 2170, 2204
BsmAI	GTCTC	8 cut(s)	270, 491, 995, 1418, 1817, 2177, 2213, 2399
BsmBI	CGTCTC	2 cut(s)	270, 491
BsmFI	GGGAC	6 cut(s)	323, 581, 814, 1240, 2062, 2240
BsmI	GAATGC	1 cut(s)	1681
BsnI	GGCC	7 cut(s)	126, 135, 968, 1111, 1391, 2143, 2245
Bso31I	GGTCTC	3 cut(s)	995, 1418, 2399
Bsp1286I	GDGCHC	2 cut(s)	51, 485
Bsp19I	CCATGG	1 cut(s)	424
BspANI	GGCC	7 cut(s)	126, 135, 968, 1111, 1391, 2143, 2245
BspCNI	CTCAG	3 cut(s)	394, 1900, 2130
BspFNI	CGCG	1 cut(s)	740
BspHI	TCATGA	2 cut(s)	169, 1720
BspLI	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
BspMAI	CTGCAG	1 cut(s)	448
BspQI	GCTCTTC	3 cut(s)	603, 669, 1059
BspT107I	GGYRCC	2 cut(s)	818, 1541
BspTI	CTTAAG	2 cut(s)	665, 1055
BspTNI	GGTCTC	3 cut(s)	995, 1418, 2399
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	3 cut(s)	438, 1647, 1935
BsrI	ACTGG	6 cut(s)	658, 1048, 1753, 1883, 2227, 2368
BssNI	GRCGYC	3 cut(s)	62, 858, 1284
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	5 cut(s)	424, 866, 1292, 1837, 2247
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
Bst4CI	ACNGT	5 cut(s)	1271, 1514, 1541, 1596, 2341
Bst6I	CTCTTC	3 cut(s)	603, 669, 1059
BstACI	GRCGYC	3 cut(s)	62, 858, 1284
BstAFI	CTTAAG	2 cut(s)	665, 1055
BstAPI	GCANNNNNTGC	1 cut(s)	1676
BstC8I	GCNNGC	1 cut(s)	1942
BstDEI	CTNAG	6 cut(s)	402, 963, 1386, 1908, 2138, 2199
BstDSI	CCRYGG	3 cut(s)	424, 1128, 1775
BstENI	CCTNNNNNAGG	3 cut(s)	270, 474, 2168
BstF5I	GGATG	4 cut(s)	46, 748, 1015, 1138
BstFNI	CGCG	1 cut(s)	740
BstHHI	GCGC	2 cut(s)	334, 721
BstMAI	GTCTC	8 cut(s)	270, 491, 995, 1418, 1817, 2177, 2213, 2399
BstNI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
BstPAI	GACNNNNGTC	4 cut(s)	764, 1007, 1190, 1430
BstSFI	CTRYAG	7 cut(s)	342, 417, 444, 519, 597, 933, 1359
BstSLI	GKGCMC	1 cut(s)	485
BstUI	CGCG	1 cut(s)	740
BstV1I	GCAGC	7 cut(s)	208, 276, 458, 1620, 1623, 2069, 2293
BstV2I	GAAGAC	3 cut(s)	65, 785, 1211
BstX2I	RGATCY	5 cut(s)	656, 949, 1046, 1928, 2402
BstYI	RGATCY	5 cut(s)	656, 949, 1046, 1928, 2402
Bsu36I	CCTNAGG	1 cut(s)	1386
BsuI	GTATCC	2 cut(s)	100, 2329
BsuRI	GGCC	7 cut(s)	126, 135, 968, 1111, 1391, 2143, 2245
BtgI	CCRYGG	3 cut(s)	424, 1128, 1775
BtsCI	GGATG	4 cut(s)	46, 748, 1015, 1138
BtsIMutI	CAGTG	4 cut(s)	382, 1434, 1890, 1905
Cac8I	GCNNGC	1 cut(s)	1942
CciI	TCATGA	2 cut(s)	169, 1720
CfoI	GCGC	2 cut(s)	334, 721
Cfr13I	GGNCC	9 cut(s)	630, 644, 925, 1034, 1109, 1351, 1855, 2142, 2244
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	7 cut(s)	17, 233, 819, 1214, 1787, 1923, 2361
CspCI	CAANNNNNGTGG	8 cut(s)	622, 657, 1012, 1047, 1117, 1152, 1435, 1470
CviQI	GTAC	7 cut(s)	17, 233, 819, 1214, 1787, 1923, 2361
DdeI	CTNAG	6 cut(s)	402, 963, 1386, 1908, 2138, 2199
DrdI	GACNNNNNNGTC	1 cut(s)	857
DseDI	GACNNNNNNGTC	1 cut(s)	857
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	3 cut(s)	603, 669, 1059
EarI	CTCTTC	3 cut(s)	603, 669, 1059
EciI	GGCGGA	3 cut(s)	1911, 1921, 2285
Eco130I	CCWWGG	5 cut(s)	424, 866, 1292, 1837, 2247
Eco31I	GGTCTC	3 cut(s)	995, 1418, 2399
Eco47I	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
Eco57I	CTGAAG	2 cut(s)	165, 1626
Eco81I	CCTNAGG	1 cut(s)	1386
EcoNI	CCTNNNNNAGG	3 cut(s)	270, 474, 2168
EcoRII	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
EcoT14I	CCWWGG	5 cut(s)	424, 866, 1292, 1837, 2247
ErhI	CCWWGG	5 cut(s)	424, 866, 1292, 1837, 2247
Esp3I	CGTCTC	2 cut(s)	270, 491
FaqI	GGGAC	6 cut(s)	323, 581, 814, 1240, 2062, 2240
FauI	CCCGC	2 cut(s)	313, 1697
FauNDI	CATATG	1 cut(s)	1633
FbaI	TGATCA	4 cut(s)	166, 1717, 1873, 1999
FblI	GTMKAC	3 cut(s)	201, 861, 1287
Fnu4HI	GCNGC	9 cut(s)	222, 290, 447, 722, 1112, 1609, 1612, 2058, 2282
FokI	GGATG	4 cut(s)	53, 755, 1002, 1145
Fsp4HI	GCNGC	9 cut(s)	222, 290, 447, 722, 1112, 1609, 1612, 2058, 2282
FspAI	RTGCGCAY	1 cut(s)	333
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	2 cut(s)	333, 720
GluI	GCNGC	9 cut(s)	222, 290, 447, 722, 1112, 1609, 1612, 2058, 2282
GsaI	CCCAGC	2 cut(s)	1758, 1985
HaeIII	GGCC	7 cut(s)	126, 135, 968, 1111, 1391, 2143, 2245
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	2 cut(s)	334, 721
Hin1I	GRCGYC	3 cut(s)	62, 858, 1284
Hin6I	GCGC	2 cut(s)	332, 719
HinP1I	GCGC	2 cut(s)	332, 719
HincII	GTYRAC	4 cut(s)	748, 862, 1138, 1288
HindII	GTYRAC	4 cut(s)	748, 862, 1138, 1288
HindIII	AAGCTT	2 cut(s)	978, 1401
Hpy166II	GTNNAC	7 cut(s)	202, 748, 862, 1138, 1288, 1351, 2323
Hpy188I	TCNGA	6 cut(s)	494, 548, 1185, 1814, 1850, 2170
Hpy188III	TCNNGA	9 cut(s)	161, 170, 176, 182, 834, 1260, 1586, 1721, 2400
Hpy8I	GTNNAC	7 cut(s)	202, 748, 862, 1138, 1288, 1351, 2323
Hpy99I	CGWCG	4 cut(s)	67, 863, 1289, 1600
HpyCH4III	ACNGT	5 cut(s)	1271, 1514, 1541, 1596, 2341
HpyCH4IV	ACGT	5 cut(s)	62, 279, 858, 1284, 2383
HpyF3I	CTNAG	6 cut(s)	402, 963, 1386, 1908, 2138, 2199
HpySE526I	ACGT	5 cut(s)	62, 279, 858, 1284, 2383
Hsp92I	GRCGYC	3 cut(s)	62, 858, 1284
HspAI	GCGC	2 cut(s)	332, 719
KpnI	GGTACC	1 cut(s)	822
Ksp22I	TGATCA	4 cut(s)	166, 1717, 1873, 1999
LguI	GCTCTTC	3 cut(s)	603, 669, 1059
LmnI	GCTCC	6 cut(s)	46, 268, 472, 623, 1163, 2413
Lsp1109I	GCAGC	7 cut(s)	208, 276, 458, 1620, 1623, 2069, 2293
LweI	GCATC	7 cut(s)	250, 319, 454, 775, 1470, 1783, 2340
MaeII	ACGT	5 cut(s)	62, 279, 858, 1284, 2383
MaeIII	GTNAC	8 cut(s)	848, 1009, 1192, 1432, 1471, 1770, 2023, 2257
MbiI	CCGCTC	1 cut(s)	320
MflI	RGATCY	5 cut(s)	656, 949, 1046, 1928, 2402
MhlI	GDGCHC	2 cut(s)	51, 485
MmeI	TCCRAC	3 cut(s)	526, 671, 1061
MseI	TTAA	5 cut(s)	249, 666, 735, 1056, 2211
MslI	CAYNNNNRTG	8 cut(s)	24, 510, 846, 903, 1272, 1329, 1478, 2036
MspA1I	CMGCKG	1 cut(s)	2060
MspCI	CTTAAG	2 cut(s)	665, 1055
Mva1269I	GAATGC	1 cut(s)	1681
MvaI	CCWGG	5 cut(s)	579, 753, 913, 1339, 1604
MvnI	CGCG	1 cut(s)	740
NciI	CCSGG	7 cut(s)	886, 1143, 1162, 1312, 2145, 2205, 2416
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	1633
NlaIV	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
NmeAIII	GCCGAG	1 cut(s)	221
NmuCI	GTSAC	7 cut(s)	848, 1009, 1192, 1432, 1471, 1770, 2257
NsbI	TGCGCA	1 cut(s)	333
OliI	CACNNNNGTG	2 cut(s)	846, 2036
PagI	TCATGA	2 cut(s)	169, 1720
PciSI	GCTCTTC	3 cut(s)	603, 669, 1059
PctI	GAATGC	1 cut(s)	1681
PflFI	GACNNNGTC	1 cut(s)	2263
PflMI	CCANNNNNTGG	2 cut(s)	653, 1043
PkrI	GCNGC	9 cut(s)	223, 291, 448, 723, 1113, 1610, 1613, 2059, 2283
PshAI	GACNNNNGTC	4 cut(s)	764, 1007, 1190, 1430
PsiI	TTATAA	1 cut(s)	2177
Psp6I	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
PspFI	CCCAGC	2 cut(s)	1754, 1981
PspGI	CCWGG	5 cut(s)	577, 751, 911, 1337, 1602
PspN4I	GGNNCC	5 cut(s)	820, 1159, 1543, 1843, 1930
PspPI	GGNCC	9 cut(s)	630, 644, 925, 1034, 1109, 1351, 1855, 2142, 2244
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	5 cut(s)	656, 949, 1046, 1928, 2402
PsyI	GACNNNGTC	1 cut(s)	2263
RsaI	GTAC	7 cut(s)	18, 234, 820, 1215, 1788, 1924, 2362
RsaNI	GTAC	7 cut(s)	17, 233, 819, 1214, 1787, 1923, 2361
RseI	CAYNNNNRTG	8 cut(s)	24, 510, 846, 903, 1272, 1329, 1478, 2036
SalI	GTCGAC	2 cut(s)	860, 1286
SapI	GCTCTTC	3 cut(s)	603, 669, 1059
SaqAI	TTAA	5 cut(s)	249, 666, 735, 1056, 2211
SatI	GCNGC	9 cut(s)	222, 290, 447, 722, 1112, 1609, 1612, 2058, 2282
Sau96I	GGNCC	9 cut(s)	630, 644, 925, 1034, 1109, 1351, 1855, 2142, 2244
ScaI	AGTACT	1 cut(s)	1788
SduI	GDGCHC	2 cut(s)	51, 485
SfaNI	GCATC	7 cut(s)	250, 319, 454, 775, 1470, 1783, 2340
SfcI	CTRYAG	7 cut(s)	342, 417, 444, 519, 597, 933, 1359
SfiI	GGCCNNNNNGGCC	1 cut(s)	132
SinI	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
SmiMI	CAYNNNNRTG	8 cut(s)	24, 510, 846, 903, 1272, 1329, 1478, 2036
SmlI	CTYRAG	6 cut(s)	665, 941, 975, 1055, 1367, 1398
SmoI	CTYRAG	6 cut(s)	665, 941, 975, 1055, 1367, 1398
StyI	CCWWGG	5 cut(s)	424, 866, 1292, 1837, 2247
TaaI	ACNGT	5 cut(s)	1271, 1514, 1541, 1596, 2341
TaiI	ACGT	5 cut(s)	65, 282, 861, 1287, 2386
TaqI	TCGA	8 cut(s)	589, 861, 918, 1287, 1494, 1598, 1733, 2348
TaqII	GACCGA	2 cut(s)	942, 1368
TatI	WGTACW	4 cut(s)	16, 232, 1213, 1786
TauI	GCSGC	2 cut(s)	724, 1114
Tru1I	TTAA	5 cut(s)	249, 666, 735, 1056, 2211
Tru9I	TTAA	5 cut(s)	249, 666, 735, 1056, 2211
TscAI	CASTG	4 cut(s)	382, 1441, 1890, 1912
TseFI	GTSAC	7 cut(s)	848, 1009, 1192, 1432, 1471, 1770, 2257
TseI	GCWGC	7 cut(s)	221, 289, 446, 1608, 1611, 2057, 2281
Tsp45I	GTSAC	7 cut(s)	848, 1009, 1192, 1432, 1471, 1770, 2257
TspGWI	ACGGA	3 cut(s)	1145, 1792, 2276
TspRI	CASTG	4 cut(s)	382, 1441, 1890, 1912
Tth111I	GACNNNGTC	1 cut(s)	2263
Van91I	CCANNNNNTGG	2 cut(s)	653, 1043
Vha464I	CTTAAG	2 cut(s)	665, 1055
VpaK11BI	GGWCC	6 cut(s)	630, 644, 925, 1034, 1351, 1855
XagI	CCTNNNNNAGG	3 cut(s)	270, 474, 2168
XapI	RAATTY	2 cut(s)	301, 2311
XbaI	TCTAGA	1 cut(s)	2399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	919, 1345
XmaJI	CCTAGG	2 cut(s)	866, 1292
XmiI	GTMKAC	3 cut(s)	201, 861, 1287
ZraI	GACGTC	3 cut(s)	63, 859, 1285
ZrmI	AGTACT	1 cut(s)	1788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.