Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Forward (+)

65091125 .. 65094114

Gene Structure 2990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG420500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2079 bp

ATGTTGGTGTATATTTCTGTGTTTATGTGTGTTATTATTGCAGAAGGTGAAGATGAAGACCACCATGAGAAGAAGTCGGTTTTGAAGAAGGTGAAGGCGAAAGCGAGGAAGTTAAAGGAGACTATCACAGGGCATGGCCATCACGGCCATGAACACGAAGGCCATCATACTCCTGATGATCATGATCTGGATGAGGAAGATGACGAAGAGGTAGACGACCCAGAAGTTCATGGTGCACCGATATATGACTCGGCAGTTGGGAGGACTGATGCTCCTATGCAAGGAGACATTTTGAAAGTGCCTATGGTGAATTTCGGAGACACTAGAGCGGGGCATGATGAATATGATCCTGTAGTTCCAAGGGAGACATCTAATGTGCCTGGGCTACATGAAAATACAGGCCATGGTGCAACGACTAGGAGGACTGATGCTCCAGTGCAAGGAGGCATTCATTTTGGAGACACACACCATGAATATGATCCTGTAGTGCCAAGAGAGAGGACTAATGTGGGATTTAGTGGACCGGTGAGGGATTTTGTGCCTGGGCAAAATCGAACTACAACAGGGCATGAGGATCTTTTGGGAGGAGCAAGGACAAAACTGGCTGGTCCAACAACTGGACCTGCCCTTAAGCATGAAGAGCCAAAGGGATTGGTTGATGTAATTGGGGGAGGTCCTCATGCGCCGCACAACACCCCTGTTTCTCCTCTTCCTCATCATGGAAATTACAACACTCTTACCATGGATGTTGACCCAGGTAAGACTTTTGGCTCCGGGCAAAGAGGGCTTTTAGGTCAGACCAGGGTCAAATTGGAGAAGACTGATGTATTAGGGGAAGGAACTCCTGTGCTACAGAGTACCCCGGTTTCTTCTCTTGCTCATGGAACTCACAGAAGTACAATGGACGTCTACCCAAGGCAGACATCCAGGCAGGGAGGACATTTAGGTCAGTCCAGGGTCAATTTGGACCGACCCAGAGGACTTGAGGAAGACCCTCATGCGCCTAAAGCCAATCCTCAAGCTTACACTCCTTCAAATTACGAGACCAAAGTCACTGATCCCACCAAATCTGGTGGTCAGGAAATTGGAGTCACACCAATACTTCATTCCTTTGATAAGATGAACCTCCACGGTGATGATCACCAATACTTGAAAAATGGTGCCAAACACAACCCGTCTACCGGAAGCCATGACCAATTCTCTCCTGATAAACCATCGAACCAGGGCAGCAGCTACACTGAAAAAATCTCATATGCCACTTCAGCCATTTCCGACAAAGCAATTTCGGCAAAGAATGTAGTTGCTTCCAAGTTGGGGTATGGCGGAAACGAGCCTGATCATGATGACTACTCGAGAGGCTATGTTACTGGTGCTGGGAAGTCTGGTTCATCACCTCGGAACAAAGTACTTGATCCCTCTACTAACCAATTCAGATCAGCAGAGACTCCACAAGTCCGAGGAACCATCAAACCGGACCATGACACCACAACTGATCAAAAGCCAGTCCACAAAGGCGGAAGCTACACTGAGAAGATTTCATCTGCCGGATCTGCCATTGCTGACAAGGCGATATCCGCAAAGAATGTTGTTGCGTCCAAGCTGGGATATGGGGCAAGAGATCAGGTGCATGACAGGGAAGATGTAACTCGCACTAACGTGCAGTCTGGGACAACAGCAGCGGATCAACATGGCAAGACGATTTCCTCTACAGTTGCGGAGAAGCTAACACCTGTGTATGAGAAGGTTGCCGGGGCAGGGACTTCTGTGATGTCCAAGGTTCAAGGTGGGAGTACTGTTAGTGCCGGCAGGGACACTAGTGCCGGGGTTGTTAATCAAGCCGGACAGGACAAAGGGGTGTCTGTGAAGGACTATTTTTCAGAGAAGCTGAGGCCCGGAGAGGAGGACAAAGCGCTTTCGGAGGTTATAAGTGAGACATTACACAAGCATAAGCCGGGTGTTAAGCAAGAGAAGACAGTGTACTTTGCTAGTTCTAGGCCCAAGGGGAAGGTGACGGAATCGGCGGAGGTGAGGCATACCGAGGGGAATGATCGAGATCAATTTTGTGGTGGACGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

692

Amino Acids

74.28

Weight (kDa)

6.24

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	20 - 86	2.5e-27	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	319 - 378	2.8e-32	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	416 - 442	8.1e-14	CAP160 repeat
CAP160	PF07918	512 - 537	1.4e-13	CAP160 repeat
LTI65_PGEED	PF23399	616 - 646	7.1e-19	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1925
AasI	GACNNNNNNGTC	1 cut(s)	945
AatII	GACGTC	1 cut(s)	909
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	1160
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccBSI	CCGCTC	1 cut(s)	329
AccI	GTMKAC	3 cut(s)	213, 909, 1178
AciI	CCGC	8 cut(s)	329, 686, 1323, 1515, 1575, 1679, 1715, 2021
AclWI	GGATC	7 cut(s)	341, 473, 582, 1052, 1406, 1555, 1689
AcoI	YGGCCR	2 cut(s)	136, 145
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	1245
AcyI	GRCGYC	1 cut(s)	906
AfaI	GTAC	5 cut(s)	859, 898, 1407, 1792, 1979
AfeI	AGCGCT	1 cut(s)	1911
AfiI	CCNNNNNNNGG	7 cut(s)	281, 440, 617, 719, 1181, 1314, 1755
AflII	CTTAAG	1 cut(s)	629
AgeI	ACCGGT	1 cut(s)	523
AgsI	TTSAA	5 cut(s)	85, 295, 1035, 1153, 1781
AhlI	ACTAGT	1 cut(s)	1814
AjnI	CCWGG	7 cut(s)	379, 541, 754, 800, 926, 953, 1221
AjuI	GAANNNNNNNTTGG	2 cut(s)	1090, 1122
AleI	CACNNNNGTG	1 cut(s)	1655
AloI	GAACNNNNNNTCC	2 cut(s)	1369, 1401
AluBI	AGCT	6 cut(s)	1022, 1233, 1521, 1600, 1723, 1885
AluI	AGCT	6 cut(s)	1022, 1233, 1521, 1600, 1723, 1885
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	8 cut(s)	113, 279, 312, 359, 453, 1037, 1436, 1925
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	7 cut(s)	341, 473, 582, 1052, 1406, 1555, 1689
Ama87I	CYCGRG	1 cut(s)	1351
Aor51HI	AGCGCT	1 cut(s)	1911
AoxI	GGCC	6 cut(s)	136, 145, 160, 400, 1889, 1994
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	1227, 1230, 1676
ApoI	RAATTY	1 cut(s)	310
AsiGI	ACCGGT	1 cut(s)	523
AspLEI	GCGC	3 cut(s)	685, 1003, 1912
AspS9I	GGNCC	8 cut(s)	521, 608, 620, 674, 967, 1474, 1890, 1995
AsuC2I	CCSGG	6 cut(s)	775, 863, 1750, 1822, 1893, 1953
AsuHPI	GGTGA	9 cut(s)	59, 103, 319, 538, 1133, 1145, 1383, 2020, 2038
AvaI	CYCGRG	1 cut(s)	1351
AvaII	GGWCC	6 cut(s)	521, 608, 620, 674, 967, 1474
BaeGI	GKGCMC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	1160
BarI	GAAGNNNNNNTAC	2 cut(s)	1961, 1993
BbsI	GAAGAC	4 cut(s)	63, 824, 996, 1976
Bbv12I	GWGCWC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	1886
BbvI	GCAGC	3 cut(s)	1239, 1242, 1688
BccI	CCATC	4 cut(s)	147, 171, 1222, 1472
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	7 cut(s)	381, 543, 756, 802, 928, 955, 1223
BclI	TGATCA	4 cut(s)	178, 1138, 1336, 1492
BcnI	CCSGG	6 cut(s)	775, 863, 1750, 1822, 1893, 1953
BcoDI	GTCTC	8 cut(s)	113, 279, 312, 359, 453, 1037, 1436, 1925
BcuI	ACTAGT	1 cut(s)	1814
BfaI	CTAG	5 cut(s)	324, 417, 1815, 1986, 1992
BfmI	CTRYAG	4 cut(s)	351, 483, 851, 1707
BfoI	RGCGCY	1 cut(s)	1913
BfrI	CTTAAG	1 cut(s)	629
BfuAI	ACCTGC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	144
BisI	GCNGC	4 cut(s)	686, 1228, 1231, 1677
BlsI	GCNGC	4 cut(s)	687, 1229, 1232, 1678
BmcAI	AGTACT	2 cut(s)	1407, 1792
Bme18I	GGWCC	6 cut(s)	521, 608, 620, 674, 967, 1474
BmeT110I	CYCGRG	1 cut(s)	1351
BmgT120I	GGNCC	8 cut(s)	521, 608, 620, 674, 967, 1474, 1890, 1995
BmiI	GGNNCC	3 cut(s)	772, 1162, 1462
BmsI	GCATC	2 cut(s)	259, 418
BoxI	GACNNNNGTC	2 cut(s)	803, 1049
BpiI	GAAGAC	4 cut(s)	63, 824, 996, 1976
BpmI	CTGGAG	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	1886
BpuEI	CTTGAG	2 cut(s)	1002, 1004
BpuMI	CCSGG	6 cut(s)	775, 863, 1750, 1822, 1893, 1953
BsaBI	GATNNNNATC	2 cut(s)	183, 2052
BsaHI	GRCGYC	1 cut(s)	906
BsaI	GGTCTC	1 cut(s)	1037
BsaWI	WCCGGW	3 cut(s)	523, 1181, 1471
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 415, 445
Bsc4I	CCNNNNNNNGG	7 cut(s)	281, 440, 617, 719, 1181, 1314, 1755
Bse118I	RCCGGY	2 cut(s)	523, 1802
Bse1I	ACTGG	5 cut(s)	434, 606, 622, 1372, 1502
Bse3DI	GCAATG	1 cut(s)	1554
Bse8I	GATNNNNATC	2 cut(s)	183, 2052
BseBI	CCWGG	7 cut(s)	381, 543, 756, 802, 928, 955, 1223
BseGI	GGATG	3 cut(s)	196, 751, 923
BseJI	GATNNNNATC	2 cut(s)	183, 2052
BseLI	CCNNNNNNNGG	7 cut(s)	281, 440, 617, 719, 1181, 1314, 1755
BseMI	GCAATG	1 cut(s)	1554
BseMII	CTCAG	2 cut(s)	1518, 1877
BseNI	ACTGG	5 cut(s)	434, 606, 622, 1372, 1502
BseRI	GAGGAG	3 cut(s)	600, 696, 1913
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	1239, 1242, 1688
BseYI	CCCAGC	2 cut(s)	1373, 1600
BsgI	GTGCAG	1 cut(s)	1679
BshFI	GGCC	6 cut(s)	138, 147, 162, 402, 1891, 1996
BshNI	GGYRCC	1 cut(s)	1160
BshTI	ACCGGT	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	1351
BslFI	GGGAC	3 cut(s)	1681, 1771, 1823
BslI	CCNNNNNNNGG	7 cut(s)	281, 440, 617, 719, 1181, 1314, 1755
BsmAI	GTCTC	8 cut(s)	113, 279, 312, 359, 453, 1037, 1436, 1925
BsmFI	GGGAC	3 cut(s)	1681, 1771, 1823
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	6 cut(s)	138, 147, 162, 402, 1891, 1996
Bso31I	GGTCTC	1 cut(s)	1037
BsoBI	CYCGRG	1 cut(s)	1351
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp19I	CCATGG	2 cut(s)	403, 741
BspACI	CCGC	8 cut(s)	329, 686, 1323, 1515, 1575, 1679, 1715, 2021
BspANI	GGCC	6 cut(s)	138, 147, 162, 402, 1891, 1996
BspCNI	CTCAG	2 cut(s)	1519, 1878
BspHI	TCATGA	2 cut(s)	181, 1339
BspLI	GGNNCC	3 cut(s)	772, 1162, 1462
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	7 cut(s)	341, 473, 582, 1052, 1406, 1555, 1689
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	1160
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	1037
BsrBI	CCGCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	1554
BsrFI	RCCGGY	2 cut(s)	523, 1802
BsrI	ACTGG	5 cut(s)	434, 606, 622, 1372, 1502
BssAI	RCCGGY	2 cut(s)	523, 1802
BssNI	GRCGYC	1 cut(s)	906
BssT1I	CCWWGG	6 cut(s)	359, 403, 741, 914, 1773, 1998
Bst2UI	CCWGG	7 cut(s)	381, 543, 756, 802, 928, 955, 1223
Bst4CI	ACNGT	4 cut(s)	1133, 1711, 1795, 1975
Bst6I	CTCTTC	3 cut(s)	201, 633, 714
BstACI	GRCGYC	1 cut(s)	906
BstAFI	CTTAAG	1 cut(s)	629
BstC8I	GCNNGC	1 cut(s)	1804
BstDEI	CTNAG	2 cut(s)	1527, 1886
BstDSI	CCRYGG	3 cut(s)	403, 741, 1129
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	196, 751, 923
BstH2I	RGCGCY	1 cut(s)	1913
BstHHI	GCGC	3 cut(s)	685, 1003, 1912
BstMAI	GTCTC	8 cut(s)	113, 279, 312, 359, 453, 1037, 1436, 1925
BstMWI	GCNNNNNNNGC	9 cut(s)	144, 640, 784, 1007, 1262, 1286, 1550, 1565, 1574
BstNI	CCWGG	7 cut(s)	381, 543, 756, 802, 928, 955, 1223
BstPAI	GACNNNNGTC	2 cut(s)	803, 1049
BstSFI	CTRYAG	4 cut(s)	351, 483, 851, 1707
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	1239, 1242, 1688
BstV2I	GAAGAC	4 cut(s)	63, 824, 996, 1976
BstX2I	RGATCY	2 cut(s)	574, 1547
BstYI	RGATCY	2 cut(s)	574, 1547
BsuRI	GGCC	6 cut(s)	138, 147, 162, 402, 1891, 1996
BtgI	CCRYGG	3 cut(s)	403, 741, 1129
BtsCI	GGATG	3 cut(s)	196, 751, 923
BtsIMutI	CAGTG	5 cut(s)	441, 1053, 1236, 1524, 1980
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	1804
CciI	TCATGA	2 cut(s)	181, 1339
CfoI	GCGC	3 cut(s)	685, 1003, 1912
Cfr10I	RCCGGY	2 cut(s)	523, 1802
Cfr13I	GGNCC	8 cut(s)	521, 608, 620, 674, 967, 1474, 1890, 1995
CseI	GACGC	1 cut(s)	1581
Csp6I	GTAC	5 cut(s)	858, 897, 1406, 1791, 1978
CspAI	ACCGGT	1 cut(s)	523
CspCI	CAANNNNNGTGG	2 cut(s)	1054, 1089
CviQI	GTAC	5 cut(s)	858, 897, 1406, 1791, 1978
DdeI	CTNAG	2 cut(s)	1527, 1886
DrdI	GACNNNNNNGTC	1 cut(s)	945
DseDI	GACNNNNNNGTC	1 cut(s)	945
EaeI	YGGCCR	2 cut(s)	136, 145
Eam1104I	CTCTTC	3 cut(s)	201, 633, 714
EarI	CTCTTC	3 cut(s)	201, 633, 714
EciI	GGCGGA	3 cut(s)	1338, 1530, 2036
Eco130I	CCWWGG	6 cut(s)	359, 403, 741, 914, 1773, 1998
Eco31I	GGTCTC	1 cut(s)	1037
Eco32I	GATATC	1 cut(s)	1572
Eco47I	GGWCC	6 cut(s)	521, 608, 620, 674, 967, 1474
Eco47III	AGCGCT	1 cut(s)	1911
Eco57I	CTGAAG	1 cut(s)	1245
Eco88I	CYCGRG	1 cut(s)	1351
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRII	CCWGG	7 cut(s)	379, 541, 754, 800, 926, 953, 1221
EcoRV	GATATC	1 cut(s)	1572
EcoT14I	CCWWGG	6 cut(s)	359, 403, 741, 914, 1773, 1998
ErhI	CCWWGG	6 cut(s)	359, 403, 741, 914, 1773, 1998
FaqI	GGGAC	3 cut(s)	1681, 1771, 1823
FauI	CCCGC	1 cut(s)	322
FauNDI	CATATG	1 cut(s)	1252
FbaI	TGATCA	4 cut(s)	178, 1138, 1336, 1492
FblI	GTMKAC	3 cut(s)	213, 909, 1178
Fnu4HI	GCNGC	4 cut(s)	686, 1228, 1231, 1677
FokI	GGATG	3 cut(s)	203, 758, 910
Fsp4HI	GCNGC	4 cut(s)	686, 1228, 1231, 1677
FspBI	CTAG	5 cut(s)	324, 417, 1815, 1986, 1992
GlaI	GCGC	3 cut(s)	684, 1002, 1911
GluI	GCNGC	4 cut(s)	686, 1228, 1231, 1677
GsaI	CCCAGC	2 cut(s)	1377, 1604
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	1913
HaeIII	GGCC	6 cut(s)	138, 147, 162, 402, 1891, 1996
HgaI	GACGC	1 cut(s)	1581
HhaI	GCGC	3 cut(s)	685, 1003, 1912
Hin1I	GRCGYC	1 cut(s)	906
Hin6I	GCGC	3 cut(s)	683, 1001, 1910
HinP1I	GCGC	3 cut(s)	683, 1001, 1910
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	1020
HinfI	GANTC	4 cut(s)	248, 1089, 1444, 2015
HphI	GGTGA	9 cut(s)	59, 103, 319, 538, 1133, 1145, 1383, 2020, 2038
Hpy166II	GTNNAC	9 cut(s)	214, 236, 521, 751, 910, 1179, 1507, 1978, 2069
Hpy188I	TCNGA	8 cut(s)	317, 798, 1273, 1398, 1433, 1457, 1879, 1918
Hpy188III	TCNNGA	8 cut(s)	173, 182, 188, 1079, 1205, 1340, 1353, 2051
Hpy8I	GTNNAC	9 cut(s)	214, 236, 521, 751, 910, 1179, 1507, 1978, 2069
HpyAV	CCTTC	9 cut(s)	38, 82, 88, 152, 830, 1041, 1735, 1858, 1999
HpyCH4III	ACNGT	4 cut(s)	1133, 1711, 1795, 1975
HpyCH4IV	ACGT	2 cut(s)	906, 1656
HpyCH4V	TGCA	7 cut(s)	41, 236, 280, 410, 439, 1627, 1660
HpyF10VI	GCNNNNNNNGC	9 cut(s)	144, 640, 784, 1007, 1262, 1286, 1550, 1565, 1574
HpyF3I	CTNAG	2 cut(s)	1527, 1886
HpySE526I	ACGT	2 cut(s)	906, 1656
Hsp92I	GRCGYC	1 cut(s)	906
HspAI	GCGC	3 cut(s)	683, 1001, 1910
KroI	GCCGGC	1 cut(s)	1802
KroNI	GCCGGC	1 cut(s)	1804
Ksp22I	TGATCA	4 cut(s)	178, 1138, 1336, 1492
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	4 cut(s)	277, 436, 587, 776
Lsp1109I	GCAGC	3 cut(s)	1239, 1242, 1688
LweI	GCATC	2 cut(s)	259, 418
MaeI	CTAG	5 cut(s)	324, 417, 1815, 1986, 1992
MaeII	ACGT	2 cut(s)	906, 1656
MaeIII	GTNAC	5 cut(s)	1051, 1090, 1363, 1642, 2008
MbiI	CCGCTC	1 cut(s)	329
MflI	RGATCY	2 cut(s)	574, 1547
MhlI	GDGCHC	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	3 cut(s)	242, 1098, 1438
MmeI	TCCRAC	2 cut(s)	635, 1296
Mox20I	TGGCCA	1 cut(s)	138
MroNI	GCCGGC	1 cut(s)	1802
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	5 cut(s)	113, 630, 1830, 1959, 2077
MslI	CAYNNNNRTG	4 cut(s)	147, 474, 1134, 1655
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	1679
MspCI	CTTAAG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	7 cut(s)	381, 543, 756, 802, 928, 955, 1223
MwoI	GCNNNNNNNGC	9 cut(s)	144, 640, 784, 1007, 1262, 1286, 1550, 1565, 1574
NaeI	GCCGGC	1 cut(s)	1804
NciI	CCSGG	6 cut(s)	775, 863, 1750, 1822, 1893, 1953
NcoI	CCATGG	2 cut(s)	403, 741
NdeI	CATATG	1 cut(s)	1252
NgoMIV	GCCGGC	1 cut(s)	1802
NlaIV	GGNNCC	3 cut(s)	772, 1162, 1462
NmeAIII	GCCGAG	1 cut(s)	230
NmuCI	GTSAC	3 cut(s)	1051, 1090, 2008
OliI	CACNNNNGTG	1 cut(s)	1655
PaeR7I	CTCGAG	1 cut(s)	1351
PagI	TCATGA	2 cut(s)	181, 1339
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	447
PdiI	GCCGGC	1 cut(s)	1804
PfeI	GAWTC	1 cut(s)	2015
PflMI	CCANNNNNTGG	1 cut(s)	617
PinAI	ACCGGT	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	687, 1229, 1232, 1678
PleI	GAGTC	3 cut(s)	242, 1097, 1438
PpsI	GAGTC	3 cut(s)	242, 1097, 1438
PpuMI	RGGWCCY	1 cut(s)	674
PshAI	GACNNNNGTC	2 cut(s)	803, 1049
PsiI	TTATAA	1 cut(s)	1925
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	7 cut(s)	379, 541, 754, 800, 926, 953, 1221
PspFI	CCCAGC	2 cut(s)	1373, 1600
PspGI	CCWGG	7 cut(s)	379, 541, 754, 800, 926, 953, 1221
PspN4I	GGNNCC	3 cut(s)	772, 1162, 1462
PspPI	GGNCC	8 cut(s)	521, 608, 620, 674, 967, 1474, 1890, 1995
PspPPI	RGGWCCY	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	574, 1547
RsaI	GTAC	5 cut(s)	859, 898, 1407, 1792, 1979
RsaNI	GTAC	5 cut(s)	858, 897, 1406, 1791, 1978
RseI	CAYNNNNRTG	4 cut(s)	147, 474, 1134, 1655
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	5 cut(s)	113, 630, 1830, 1959, 2077
SatI	GCNGC	4 cut(s)	686, 1228, 1231, 1677
Sau96I	GGNCC	8 cut(s)	521, 608, 620, 674, 967, 1474, 1890, 1995
ScaI	AGTACT	2 cut(s)	1407, 1792
SchI	GAGTC	3 cut(s)	242, 1098, 1438
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	2 cut(s)	259, 418
SfcI	CTRYAG	4 cut(s)	351, 483, 851, 1707
SfiI	GGCCNNNNNGGCC	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	1351
SinI	GGWCC	6 cut(s)	521, 608, 620, 674, 967, 1474
SlaI	CTCGAG	1 cut(s)	1351
SmiMI	CAYNNNNRTG	4 cut(s)	147, 474, 1134, 1655
SmlI	CTYRAG	4 cut(s)	629, 983, 1017, 1351
SmoI	CTYRAG	4 cut(s)	629, 983, 1017, 1351
SpeI	ACTAGT	1 cut(s)	1814
SsiI	CCGC	8 cut(s)	329, 686, 1323, 1515, 1575, 1679, 1715, 2021
SspMI	CTAG	5 cut(s)	324, 417, 1815, 1986, 1992
StyI	CCWWGG	6 cut(s)	359, 403, 741, 914, 1773, 1998
TaaI	ACNGT	4 cut(s)	1133, 1711, 1795, 1975
TaiI	ACGT	2 cut(s)	909, 1659
TaqI	TCGA	4 cut(s)	553, 1217, 1352, 2050
TaqII	GACCGA	1 cut(s)	984
TatI	WGTACW	4 cut(s)	896, 1405, 1790, 1977
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	1 cut(s)	2015
Tru1I	TTAA	5 cut(s)	113, 630, 1830, 1959, 2077
Tru9I	TTAA	5 cut(s)	113, 630, 1830, 1959, 2077
TscAI	CASTG	5 cut(s)	441, 1060, 1243, 1531, 1980
TseFI	GTSAC	3 cut(s)	1051, 1090, 2008
TseI	GCWGC	3 cut(s)	1227, 1230, 1676
Tsp45I	GTSAC	3 cut(s)	1051, 1090, 2008
TspGWI	ACGGA	1 cut(s)	2027
TspRI	CASTG	5 cut(s)	441, 1060, 1243, 1531, 1980
Van91I	CCANNNNNTGG	1 cut(s)	617
Vha464I	CTTAAG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	6 cut(s)	521, 608, 620, 674, 967, 1474
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	808, 961
XhoI	CTCGAG	1 cut(s)	1351
XmiI	GTMKAC	3 cut(s)	213, 909, 1178
XspI	CTAG	5 cut(s)	324, 417, 1815, 1986, 1992
ZraI	GACGTC	1 cut(s)	907
ZrmI	AGTACT	2 cut(s)	1407, 1792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.