Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Forward (+)

21275889 .. 21279522

Gene Structure 3634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGTTTGCAGCTTTACAAGCTTTAAAGGTTATTGAATCCGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGTTGGGTGGTTTCTGCAAGCAATACTCTATCGAGGAACTCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATTCAAGGTTTGGCAGAGGCAGGACTTATCTCAAGCAAACTCTCTAACAACAATATGCCTTCTTCTGAGAGCAGTCGGGTTACGTTCTCCCCAGAAAGTCCTCTAACACGTCAGGATCTATTGAGCTGGAAGATGGCTTTGGAATTTCGACAGCTTCCAGAAGCTGATAGCAAGAAATTATACCAACTTTCTGGTTTTCTTGACATTGATAAAATAAACCCAGAAGCATGGCCTGCCCTTATAGCTGACCTATCTGCTGGAGAACACGGAATAACAGCACTTTCTTTTGGGCGTACCAGATTGTTTCAACCGTCGAAAGCAGTTACAAAAGCCCAAACAGCTGTGTCTCTTGCAATTGGTGATGCTTTTGAAGTAGTTGGTGAGGAGCTAGCTCGTATAGAAGCAGAGGCTATGGCCGAAAATGTGGTTTGTGCACATAACGAATTGGTTGCTCAGGTCGAGAAGGATATTAATGCTAGCTTCGAGAAAGAGCTTTTAAGAGAAAAAGAAATAGTAGATGCAGTGGAGAAATTGGCTGAAGAAGCAAAGTCAGAGCTAGCGAGACTTAGAGTTGAGAAAGAAGAGGAGACTCTTGCATTGGAGAGAGAACGCACATCGATTGAAACAGAAATGGAGGCTCTTGCAAGGATACGAAATGAGCTTGAGGAACAACTTCAAAGCCTTGCGAGTAACAAGGCAGAGATGTCATATGAGAAAGAGAGGTTTGATAGACTTCAAAAGCAAGTGGAGGATGAGAACCAAGAGATACTCCGGTTACAAAATGAGCTTGAAGTTGAAAGGAACGCTTTATCCATTGCCAGGGATTGGGCTAAGGATGAAGCGAGAAGAGCAAGAGAACAAGCAAAAGTGCTAGAAGAAGCTAGAGGACGTTGGGAGAAGTATGGCCTAAAAGTGATTGTTGACAGCGACCTCCATGAACAGACAACAAAAACCGAATCTACTTGGCTGAACGCAGGAAAGCAAAATCATGTAGAAGGAACCATGAAAAGAGCTGGAAATCTGATTGCTAAGCTGAAGAAGATGGCGAAAGATGTAGGAGAGAAATCCAGAGAAGTAATTTACTTGATCATAGAGAAGATAAGCCTTCTGATATCAGCCTTAAAACAACAAGTTCATGGCATGGAGAACAAAGCCAAAGACCTCAAAATCAAAACTAAGTCTAAAGCAGAGGAAGTGTGGAGACAAACGAGCTTGAGGGCTGATGAGATCAGAAATATCTCTATAGTGAAGGCTAAGGAGACTGTGGAAGAGTTTAAGGACAGAGTCGGTAAACTCGGCGAGAAATTCAAGTCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

510

Amino Acids

57.8

Weight (kDa)

5.29

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1038
AclWI	GGATC	2 cut(s)	191, 336
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	3 cut(s)	74, 356, 1517
AcuI	CTGAAG	3 cut(s)	213, 771, 1268
AdeI	CACNNNGTG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	64, 508
AfiI	CCNNNNNNNGG	2 cut(s)	1032, 1038
AflIII	ACRYGT	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	1031
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AloI	GAACNNNNNNTCC	2 cut(s)	1007, 1039
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	5 cut(s)	564, 769, 794, 1408, 1466
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	191, 336
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	443, 627, 1117
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	3 cut(s)	74, 356, 1517
AseI	ATTAAT	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	885
AsuHPI	GGTGA	2 cut(s)	584, 605
AsuNHI	GCTAGC	3 cut(s)	601, 689, 769
BaeGI	GKGCMC	1 cut(s)	649
BaeI	ACNNNNGTAYC	2 cut(s)	971, 1004
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	340, 1249
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	1 cut(s)	1033
BciVI	GTATCC	1 cut(s)	855
BclI	TGATCA	1 cut(s)	1299
BcoDI	GTCTC	5 cut(s)	564, 769, 794, 1408, 1466
BfaI	CTAG	5 cut(s)	602, 690, 770, 1085, 1095
BfmI	CTRYAG	1 cut(s)	1455
BfuI	GTATCC	1 cut(s)	855
BisI	GCNGC	1 cut(s)	9
BlpI	GCTNAGC	1 cut(s)	1242
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	1033
BmgBI	CACGTC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	1213
BmrFI	CCNGG	1 cut(s)	1033
BmsI	GCATC	4 cut(s)	31, 134, 565, 721
BmtI	GCTAGC	3 cut(s)	605, 693, 773
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	3 cut(s)	666, 1044, 1467
Bpu1102I	GCTNAGC	1 cut(s)	1242
BpuEI	CTTGAG	3 cut(s)	229, 896, 1447
Bsa29I	ATCGAT	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	1032
BsaWI	WCCGGW	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	2 cut(s)	1032, 1038
Bse3DI	GCAATG	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	1033
BseCI	ATCGAT	1 cut(s)	830
BseDI	CCNNGG	1 cut(s)	1032
BseGI	GGATG	2 cut(s)	970, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	1032, 1038
BseMI	GCAATG	1 cut(s)	1026
BseMII	CTCAG	3 cut(s)	135, 270, 680
BseRI	GAGGAG	2 cut(s)	611, 812
BseSI	GKGCMC	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	3 cut(s)	445, 629, 1119
BshVI	ATCGAT	1 cut(s)	830
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	985
BslI	CCNNNNNNNGG	2 cut(s)	1032, 1038
BsmAI	GTCTC	5 cut(s)	564, 769, 794, 1408, 1466
BsnI	GGCC	3 cut(s)	445, 629, 1119
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp1407I	TGTACA	1 cut(s)	62
Bsp143I	GATC	4 cut(s)	196, 328, 1299, 1440
Bsp1720I	GCTNAGC	1 cut(s)	1242
BspANI	GGCC	3 cut(s)	445, 629, 1119
BspCNI	CTCAG	3 cut(s)	134, 271, 679
BspDI	ATCGAT	1 cut(s)	830
BspLI	GGNNCC	1 cut(s)	1213
BspOI	GCTAGC	3 cut(s)	605, 693, 773
BspPI	GGATC	2 cut(s)	191, 336
BspQI	GCTCTTC	1 cut(s)	1054
BsrDI	GCAATG	1 cut(s)	1026
BsrGI	TGTACA	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	1032
BssMI	GATC	4 cut(s)	196, 328, 1299, 1440
Bst2UI	CCWGG	1 cut(s)	1033
Bst4CI	ACNGT	2 cut(s)	525, 1477
Bst6I	CTCTTC	3 cut(s)	789, 1054, 1476
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstAUI	TGTACA	1 cut(s)	62
BstC8I	GCNNGC	5 cut(s)	100, 447, 603, 691, 771
BstDEI	CTNAG	8 cut(s)	121, 279, 666, 779, 1044, 1242, 1389, 1467
BstF5I	GGATG	2 cut(s)	970, 1054
BstKTI	GATC	4 cut(s)	199, 331, 1302, 1443
BstMAI	GTCTC	5 cut(s)	564, 769, 794, 1408, 1466
BstMBI	GATC	4 cut(s)	196, 328, 1299, 1440
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 446, 455, 551, 755, 1061
BstNI	CCWGG	1 cut(s)	1033
BstSCI	CCNGG	1 cut(s)	1031
BstSFI	CTRYAG	1 cut(s)	1455
BstSLI	GKGCMC	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	2 cut(s)	196, 328
BstXI	CCANNNNNNTGG	2 cut(s)	404, 441
BstYI	RGATCY	2 cut(s)	196, 328
Bsu15I	ATCGAT	1 cut(s)	830
BsuI	GTATCC	1 cut(s)	855
BsuRI	GGCC	3 cut(s)	445, 629, 1119
BsuTUI	ATCGAT	1 cut(s)	830
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	970, 1054
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	5 cut(s)	100, 447, 603, 691, 771
CaiI	CAGNNNCTG	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	830
Csp6I	GTAC	2 cut(s)	63, 507
CviAII	CATG	7 cut(s)	145, 441, 1148, 1202, 1216, 1349, 1354
CviQI	GTAC	2 cut(s)	63, 507
DdeI	CTNAG	8 cut(s)	121, 279, 666, 779, 1044, 1242, 1389, 1467
DpnI	GATC	4 cut(s)	198, 330, 1301, 1442
DpnII	GATC	4 cut(s)	196, 328, 1299, 1440
DraI	TTTAAA	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	3 cut(s)	789, 1054, 1476
EarI	CTCTTC	3 cut(s)	789, 1054, 1476
Eco32I	GATATC	1 cut(s)	1326
Eco57I	CTGAAG	3 cut(s)	213, 771, 1268
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	1031
EcoRV	GATATC	1 cut(s)	1326
FaeI	CATG	7 cut(s)	148, 444, 1151, 1205, 1219, 1352, 1357
FalI	AAGNNNNNCTT	2 cut(s)	1003, 1035
FatI	CATG	7 cut(s)	144, 440, 1147, 1201, 1215, 1348, 1353
FauNDI	CATATG	1 cut(s)	922
FbaI	TGATCA	1 cut(s)	1299
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	2 cut(s)	977, 1061
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	5 cut(s)	602, 690, 770, 1085, 1095
GluI	GCNGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	445, 629, 1119
HapII	CCGG	1 cut(s)	985
Hin1II	CATG	7 cut(s)	148, 444, 1151, 1205, 1219, 1352, 1357
HincII	GTYRAC	1 cut(s)	1135
HindII	GTYRAC	1 cut(s)	1135
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	4 cut(s)	35, 802, 1169, 1497
HpaII	CCGG	1 cut(s)	985
HphI	GGTGA	2 cut(s)	584, 605
Hpy166II	GTNNAC	4 cut(s)	65, 647, 1135, 1505
Hpy188I	TCNGA	6 cut(s)	40, 280, 766, 1236, 1323, 1445
Hpy188III	TCNNGA	7 cut(s)	200, 326, 371, 413, 673, 697, 1281
Hpy8I	GTNNAC	4 cut(s)	65, 647, 1135, 1505
Hpy99I	CGWCG	1 cut(s)	529
HpyAV	CCTTC	5 cut(s)	282, 670, 1202, 1328, 1456
HpyCH4III	ACNGT	2 cut(s)	525, 1477
HpyCH4IV	ACGT	3 cut(s)	296, 322, 1102
HpyCH4V	TGCA	8 cut(s)	8, 98, 173, 566, 647, 734, 809, 857
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 446, 455, 551, 755, 1061
HpyF3I	CTNAG	8 cut(s)	121, 279, 666, 779, 1044, 1242, 1389, 1467
HpySE526I	ACGT	3 cut(s)	296, 322, 1102
Hsp92II	CATG	7 cut(s)	148, 444, 1151, 1205, 1219, 1352, 1357
Ksp22I	TGATCA	1 cut(s)	1299
Kzo9I	GATC	4 cut(s)	196, 328, 1299, 1440
LguI	GCTCTTC	1 cut(s)	1054
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	4 cut(s)	31, 134, 565, 721
MaeI	CTAG	5 cut(s)	602, 690, 770, 1085, 1095
MaeII	ACGT	3 cut(s)	296, 322, 1102
MaeIII	GTNAC	5 cut(s)	160, 292, 535, 902, 987
MalI	GATC	4 cut(s)	198, 330, 1301, 1442
MboI	GATC	4 cut(s)	196, 328, 1299, 1440
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	196, 328
MhlI	GDGCHC	1 cut(s)	649
MluCI	AATT	8 cut(s)	74, 356, 389, 567, 656, 743, 1290, 1517
MlyI	GAGTC	2 cut(s)	796, 1506
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	5 cut(s)	23, 684, 710, 1334, 1488
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	1 cut(s)	985
MspR9I	CCNGG	1 cut(s)	1033
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	6 cut(s)	17, 446, 455, 551, 755, 1061
NdeI	CATATG	1 cut(s)	922
NdeII	GATC	4 cut(s)	196, 328, 1299, 1440
NheI	GCTAGC	3 cut(s)	601, 689, 769
NlaIII	CATG	7 cut(s)	148, 444, 1151, 1205, 1219, 1352, 1357
NlaIV	GGNNCC	1 cut(s)	1213
NmeAIII	GCCGAG	1 cut(s)	1488
PciSI	GCTCTTC	1 cut(s)	1054
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	35, 1169
PflFI	GACNNNGTC	1 cut(s)	1496
PflMI	CCANNNNNTGG	1 cut(s)	1038
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	796, 1505
PpsI	GAGTC	2 cut(s)	796, 1505
PshBI	ATTAAT	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	1031
PspGI	CCWGG	1 cut(s)	1031
PspN4I	GGNNCC	1 cut(s)	1213
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	196, 328
PsyI	GACNNNGTC	1 cut(s)	1496
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	64, 508
RsaNI	GTAC	2 cut(s)	63, 507
SapI	GCTCTTC	1 cut(s)	1054
SaqAI	TTAA	5 cut(s)	23, 684, 710, 1334, 1488
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	4 cut(s)	196, 328, 1299, 1440
SchI	GAGTC	2 cut(s)	796, 1506
ScrFI	CCNGG	1 cut(s)	1033
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	4 cut(s)	31, 134, 565, 721
SfcI	CTRYAG	1 cut(s)	1455
SmlI	CTYRAG	3 cut(s)	244, 875, 1426
SmoI	CTYRAG	3 cut(s)	244, 875, 1426
Sse9I	AATT	8 cut(s)	74, 356, 389, 567, 656, 743, 1290, 1517
SspMI	CTAG	5 cut(s)	602, 690, 770, 1085, 1095
StyD4I	CCNGG	1 cut(s)	1031
TaaI	ACNGT	2 cut(s)	525, 1477
TaiI	ACGT	3 cut(s)	299, 325, 1105
TaqI	TCGA	7 cut(s)	113, 361, 527, 672, 696, 830, 1526
TasI	AATT	8 cut(s)	74, 356, 389, 567, 656, 743, 1290, 1517
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	35, 1169
Tru1I	TTAA	5 cut(s)	23, 684, 710, 1334, 1488
Tru9I	TTAA	5 cut(s)	23, 684, 710, 1334, 1488
TscAI	CASTG	1 cut(s)	741
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	5 cut(s)	202, 1065, 1164, 1232, 1337
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	741
Tth111I	GACNNNGTC	1 cut(s)	1496
Van91I	CCANNNNNTGG	1 cut(s)	1038
VneI	GTGCAC	1 cut(s)	645
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	3 cut(s)	74, 356, 1517
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	5 cut(s)	602, 690, 770, 1085, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.