isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410 |
| fragaria_vesca | FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 |
| malus_domestica | MD01G1204600.v1.1 MD07G1273100.v1.1 |
| prunus_persica | Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 |
| pyrus_communis | pycom01g21410 pycom07g24950 pycom07g24960 |
| rosa_chinensis | RchiOBHm_Chr1g0377741 |
| rosa_laevigata | RLG00000026502 |
| rosa_multiflora | Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00281100 |
| rosa_rugosa | Rorug01G0404500 Rorug01G0404500 Rorug01G0404500 |
| rosa_samantha | Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600 |
| rosa_wichuraiana | Rw1G037080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 573 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 704, 1805 |
| Acc36I | ACCTGC | 3 cut(s) | 488, 1333, 1390 |
| Acc65I | GGTACC | 1 cut(s) | 1378 |
| AccB1I | GGYRCC | 1 cut(s) | 1378 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1633, 2454 |
| AccI | GTMKAC | 1 cut(s) | 1321 |
| AccII | CGCG | 3 cut(s) | 162, 335, 2847 |
| AccIII | TCCGGA | 3 cut(s) | 121, 275, 484 |
| AciI | CCGC | 8 cut(s) | 162, 165, 169, 335, 377, 446, 2179, 2852 |
| AclI | AACGTT | 1 cut(s) | 719 |
| AclWI | GGATC | 2 cut(s) | 519, 2127 |
| AcoI | YGGCCR | 3 cut(s) | 3, 166, 2445 |
| AcsI | RAATTY | 4 cut(s) | 895, 927, 1300, 2605 |
| AcuI | CTGAAG | 3 cut(s) | 1623, 2187, 2481 |
| AdeI | CACNNNGTG | 1 cut(s) | 1481 |
| AfaI | GTAC | 8 cut(s) | 502, 817, 1131, 1353, 1380, 1474, 1715, 2816 |
| AfeI | AGCGCT | 3 cut(s) | 643, 1516, 1732 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 128, 1633, 2133, 2134, 2233, 2448, 2454, 2533 |
| AflIII | ACRYGT | 1 cut(s) | 1475 |
| AjiI | CACGTC | 3 cut(s) | 1478, 1673, 1742 |
| AjnI | CCWGG | 8 cut(s) | 918, 931, 1161, 1363, 1459, 1962, 2388, 2447 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1324, 1356 |
| Alw21I | GWGCWC | 2 cut(s) | 35, 111 |
| Alw26I | GTCTC | 3 cut(s) | 30, 546, 886 |
| AlwI | GGATC | 2 cut(s) | 519, 2127 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 884, 1796 |
| Ama87I | CYCGRG | 2 cut(s) | 525, 1522 |
| Aor13HI | TCCGGA | 3 cut(s) | 121, 275, 484 |
| Aor51HI | AGCGCT | 3 cut(s) | 643, 1516, 1732 |
| AoxI | GGCC | 5 cut(s) | 3, 166, 630, 1218, 2445 |
| ApeKI | GCWGC | 7 cut(s) | 17, 157, 1346, 1418, 1967, 2243, 2797 |
| ApoI | RAATTY | 4 cut(s) | 895, 927, 1300, 2605 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1153, 1304 |
| Asp718I | GGTACC | 1 cut(s) | 1378 |
| AspA2I | CCTAGG | 1 cut(s) | 1075 |
| AspLEI | GCGC | 6 cut(s) | 96, 162, 644, 1517, 1733, 2847 |
| AspS9I | GGNCC | 5 cut(s) | 228, 273, 1219, 1706, 1807 |
| AsuC2I | CCSGG | 5 cut(s) | 98, 201, 223, 546, 851 |
| AsuHPI | GGTGA | 6 cut(s) | 97, 430, 1475, 2000, 2555, 2875 |
| AvaI | CYCGRG | 2 cut(s) | 525, 1522 |
| AvaII | GGWCC | 4 cut(s) | 228, 273, 1706, 1807 |
| AvrII | CCTAGG | 1 cut(s) | 1075 |
| BaeGI | GKGCMC | 1 cut(s) | 206 |
| BalI | TGGCCA | 2 cut(s) | 5, 2447 |
| BanI | GGYRCC | 1 cut(s) | 1378 |
| BanII | GRGCYC | 2 cut(s) | 35, 55 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1344, 1376 |
| BbsI | GAAGAC | 5 cut(s) | 252, 336, 960, 1086, 1611 |
| Bbv12I | GWGCWC | 2 cut(s) | 35, 111 |
| BbvCI | CCTCAGC | 1 cut(s) | 1143 |
| BbvI | GCAGC | 7 cut(s) | 29, 169, 1358, 1430, 1954, 2255, 2809 |
| BccI | CCATC | 9 cut(s) | 206, 376, 467, 641, 1230, 1488, 1631, 2605, 2771 |
| BceAI | ACGGC | 1 cut(s) | 373 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2000, 2034 |
| BciT130I | CCWGG | 8 cut(s) | 920, 933, 1163, 1365, 1461, 1964, 2390, 2449 |
| BclI | TGATCA | 2 cut(s) | 751, 1393 |
| BcnI | CCSGG | 5 cut(s) | 98, 201, 223, 546, 851 |
| BcoDI | GTCTC | 3 cut(s) | 30, 546, 886 |
| BfaI | CTAG | 6 cut(s) | 578, 1076, 1772, 1926, 2270, 2417 |
| BfmI | CTRYAG | 7 cut(s) | 15, 38, 155, 810, 1002, 1344, 1383 |
| BfoI | RGCGCY | 3 cut(s) | 645, 1518, 1734 |
| BfuAI | ACCTGC | 3 cut(s) | 488, 1333, 1390 |
| BglII | AGATCT | 1 cut(s) | 1747 |
| BlnI | CCTAGG | 1 cut(s) | 1075 |
| BlpI | GCTNAGC | 1 cut(s) | 2841 |
| Bme18I | GGWCC | 4 cut(s) | 228, 273, 1706, 1807 |
| BmeT110I | CYCGRG | 2 cut(s) | 525, 1522 |
| BmgBI | CACGTC | 3 cut(s) | 1478, 1673, 1742 |
| BmgT120I | GGNCC | 5 cut(s) | 228, 273, 1219, 1706, 1807 |
| BmiI | GGNNCC | 4 cut(s) | 235, 387, 1380, 1707 |
| BmsI | GCATC | 8 cut(s) | 81, 620, 1846, 2050, 2137, 2362, 2508, 2551 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1704 |
| BpiI | GAAGAC | 5 cut(s) | 252, 336, 960, 1086, 1611 |
| BpmI | CTGGAG | 4 cut(s) | 315, 1908, 2751, 2763 |
| Bpu10I | CCTNAGC | 2 cut(s) | 905, 1143 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2841 |
| BpuEI | CTTGAG | 6 cut(s) | 806, 1038, 1639, 1651, 2150, 2606 |
| BpuMI | CCSGG | 5 cut(s) | 98, 201, 223, 546, 851 |
| BsaBI | GATNNNNATC | 1 cut(s) | 573 |
| BsaI | GGTCTC | 1 cut(s) | 30 |
| BsaWI | WCCGGW | 5 cut(s) | 121, 230, 275, 484, 614 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 270, 282, 300, 312 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 128, 1633, 2133, 2134, 2233, 2448, 2454, 2533 |
| Bse118I | RCCGGY | 1 cut(s) | 1948 |
| Bse1I | ACTGG | 2 cut(s) | 878, 1990 |
| Bse3DI | GCAATG | 3 cut(s) | 766, 1560, 2634 |
| Bse8I | GATNNNNATC | 1 cut(s) | 573 |
| BseAI | TCCGGA | 3 cut(s) | 121, 275, 484 |
| BseBI | CCWGG | 8 cut(s) | 920, 933, 1163, 1365, 1461, 1964, 2390, 2449 |
| BseGI | GGATG | 9 cut(s) | 96, 454, 611, 928, 1018, 1623, 1699, 2101, 2860 |
| BseJI | GATNNNNATC | 1 cut(s) | 573 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 128, 1633, 2133, 2134, 2233, 2448, 2454, 2533 |
| BseMI | GCAATG | 3 cut(s) | 766, 1560, 2634 |
| BseMII | CTCAG | 8 cut(s) | 618, 954, 1134, 1545, 1566, 1836, 2193, 2592 |
| BseNI | ACTGG | 2 cut(s) | 878, 1990 |
| BseRI | GAGGAG | 4 cut(s) | 148, 1284, 2027, 2309 |
| BseSI | GKGCMC | 1 cut(s) | 206 |
| BseX3I | CGGCCG | 1 cut(s) | 166 |
| BseXI | GCAGC | 7 cut(s) | 29, 169, 1358, 1430, 1954, 2255, 2809 |
| BseYI | CCCAGC | 2 cut(s) | 48, 140 |
| BsgI | GTGCAG | 2 cut(s) | 1851, 2262 |
| Bsh1236I | CGCG | 3 cut(s) | 162, 335, 2847 |
| Bsh1285I | CGRYCG | 1 cut(s) | 169 |
| BshFI | GGCC | 5 cut(s) | 5, 168, 632, 1220, 2447 |
| BshNI | GGYRCC | 1 cut(s) | 1378 |
| BsiEI | CGRYCG | 1 cut(s) | 169 |
| BsiHKAI | GWGCWC | 2 cut(s) | 35, 111 |
| BsiHKCI | CYCGRG | 2 cut(s) | 525, 1522 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 128, 1633, 2133, 2134, 2233, 2448, 2454, 2533 |
| BsmAI | GTCTC | 3 cut(s) | 30, 546, 886 |
| BsmI | GAATGC | 1 cut(s) | 2107 |
| BsnI | GGCC | 5 cut(s) | 5, 168, 632, 1220, 2447 |
| Bso31I | GGTCTC | 1 cut(s) | 30 |
| BsoBI | CYCGRG | 2 cut(s) | 525, 1522 |
| Bsp1286I | GDGCHC | 4 cut(s) | 35, 55, 111, 206 |
| Bsp13I | TCCGGA | 3 cut(s) | 121, 275, 484 |
| Bsp1407I | TGTACA | 2 cut(s) | 1351, 1472 |
| Bsp143I | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2841 |
| Bsp19I | CCATGG | 1 cut(s) | 2442 |
| BspACI | CCGC | 8 cut(s) | 162, 165, 169, 335, 377, 446, 2179, 2852 |
| BspANI | GGCC | 5 cut(s) | 5, 168, 632, 1220, 2447 |
| BspCNI | CTCAG | 8 cut(s) | 619, 955, 1135, 1544, 1567, 1835, 2194, 2593 |
| BspEI | TCCGGA | 3 cut(s) | 121, 275, 484 |
| BspFNI | CGCG | 3 cut(s) | 162, 335, 2847 |
| BspLI | GGNNCC | 4 cut(s) | 235, 387, 1380, 1707 |
| BspMAI | CTGCAG | 4 cut(s) | 19, 159, 1348, 1387 |
| BspMI | ACCTGC | 3 cut(s) | 488, 1333, 1390 |
| BspPI | GGATC | 2 cut(s) | 519, 2127 |
| BspT107I | GGYRCC | 1 cut(s) | 1378 |
| BspTNI | GGTCTC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 3 cut(s) | 766, 1560, 2634 |
| BsrFI | RCCGGY | 1 cut(s) | 1948 |
| BsrGI | TGTACA | 2 cut(s) | 1351, 1472 |
| BsrI | ACTGG | 2 cut(s) | 878, 1990 |
| BssAI | RCCGGY | 1 cut(s) | 1948 |
| BssMI | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| BssNAI | GTATAC | 1 cut(s) | 1322 |
| BssT1I | CCWWGG | 4 cut(s) | 1075, 1627, 2442, 2808 |
| Bst1107I | GTATAC | 1 cut(s) | 1322 |
| Bst2UI | CCWGG | 8 cut(s) | 920, 933, 1163, 1365, 1461, 1964, 2390, 2449 |
| Bst4CI | ACNGT | 7 cut(s) | 72, 559, 976, 1129, 1336, 1932, 2590 |
| Bst6I | CTCTTC | 3 cut(s) | 591, 1315, 2526 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 409, 443, 1865, 1874, 2069 |
| BstAUI | TGTACA | 2 cut(s) | 1351, 1472 |
| BstC8I | GCNNGC | 6 cut(s) | 35, 1410, 1581, 2019, 2023, 2566 |
| BstDSI | CCRYGG | 1 cut(s) | 2442 |
| BstEII | GGTNACC | 1 cut(s) | 325 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2231 |
| BstF5I | GGATG | 9 cut(s) | 96, 454, 611, 928, 1018, 1623, 1699, 2101, 2860 |
| BstFNI | CGCG | 3 cut(s) | 162, 335, 2847 |
| BstH2I | RGCGCY | 3 cut(s) | 645, 1518, 1734 |
| BstHHI | GCGC | 6 cut(s) | 96, 162, 644, 1517, 1733, 2847 |
| BstKTI | GATC | 8 cut(s) | 514, 739, 754, 1396, 1750, 2122, 2416, 2783 |
| BstMAI | GTCTC | 3 cut(s) | 30, 546, 886 |
| BstMBI | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| BstMCI | CGRYCG | 1 cut(s) | 169 |
| BstNI | CCWGG | 8 cut(s) | 920, 933, 1163, 1365, 1461, 1964, 2390, 2449 |
| BstNSI | RCATGY | 1 cut(s) | 1863 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1704 |
| BstPI | GGTNACC | 1 cut(s) | 325 |
| BstSFI | CTRYAG | 7 cut(s) | 15, 38, 155, 810, 1002, 1344, 1383 |
| BstSLI | GKGCMC | 1 cut(s) | 206 |
| BstUI | CGCG | 3 cut(s) | 162, 335, 2847 |
| BstV1I | GCAGC | 7 cut(s) | 29, 169, 1358, 1430, 1954, 2255, 2809 |
| BstV2I | GAAGAC | 5 cut(s) | 252, 336, 960, 1086, 1611 |
| BstX2I | RGATCY | 2 cut(s) | 1747, 2119 |
| BstYI | RGATCY | 2 cut(s) | 1747, 2119 |
| BstZ17I | GTATAC | 1 cut(s) | 1322 |
| BstZI | CGGCCG | 1 cut(s) | 166 |
| BsuRI | GGCC | 5 cut(s) | 5, 168, 632, 1220, 2447 |
| BtgI | CCRYGG | 1 cut(s) | 2442 |
| BtrI | CACGTC | 3 cut(s) | 1478, 1673, 1742 |
| BtsCI | GGATG | 9 cut(s) | 96, 454, 611, 928, 1018, 1623, 1699, 2101, 2860 |
| BtsI | GCAGTG | 3 cut(s) | 178, 204, 2640 |
| BtsIMutI | CAGTG | 5 cut(s) | 178, 204, 972, 1983, 2640 |
| BveI | ACCTGC | 3 cut(s) | 488, 1333, 1390 |
| Cac8I | GCNNGC | 6 cut(s) | 35, 1410, 1581, 2019, 2023, 2566 |
| CaiI | CAGNNNCTG | 2 cut(s) | 884, 1796 |
| CciNI | GCGGCCGC | 1 cut(s) | 166 |
| CfoI | GCGC | 6 cut(s) | 96, 162, 644, 1517, 1733, 2847 |
| Cfr10I | RCCGGY | 1 cut(s) | 1948 |
| Cfr13I | GGNCC | 5 cut(s) | 228, 273, 1219, 1706, 1807 |
| CsiI | ACCWGGT | 1 cut(s) | 1459 |
| Csp6I | GTAC | 8 cut(s) | 501, 816, 1130, 1352, 1379, 1473, 1714, 2815 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 961, 996, 2616, 2651 |
| CviAII | CATG | 8 cut(s) | 21, 755, 986, 1860, 2285, 2443, 2495, 2901 |
| CviQI | GTAC | 8 cut(s) | 501, 816, 1130, 1352, 1379, 1473, 1714, 2815 |
| DpnI | GATC | 8 cut(s) | 513, 738, 753, 1395, 1749, 2121, 2415, 2782 |
| DpnII | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| DraIII | CACNNNGTG | 1 cut(s) | 1481 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 704, 1805 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 704, 1805 |
| EaeI | YGGCCR | 3 cut(s) | 3, 166, 2445 |
| EagI | CGGCCG | 1 cut(s) | 166 |
| Eam1104I | CTCTTC | 3 cut(s) | 591, 1315, 2526 |
| EarI | CTCTTC | 3 cut(s) | 591, 1315, 2526 |
| Ecl136II | GAGCTC | 1 cut(s) | 33 |
| EclXI | CGGCCG | 1 cut(s) | 166 |
| Eco130I | CCWWGG | 4 cut(s) | 1075, 1627, 2442, 2808 |
| Eco24I | GRGCYC | 2 cut(s) | 35, 55 |
| Eco31I | GGTCTC | 1 cut(s) | 30 |
| Eco32I | GATATC | 1 cut(s) | 2334 |
| Eco47I | GGWCC | 4 cut(s) | 228, 273, 1706, 1807 |
| Eco47III | AGCGCT | 3 cut(s) | 643, 1516, 1732 |
| Eco52I | CGGCCG | 1 cut(s) | 166 |
| Eco53kI | GAGCTC | 1 cut(s) | 33 |
| Eco57I | CTGAAG | 3 cut(s) | 1623, 2187, 2481 |
| Eco88I | CYCGRG | 2 cut(s) | 525, 1522 |
| Eco91I | GGTNACC | 1 cut(s) | 325 |
| EcoICRI | GAGCTC | 1 cut(s) | 33 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1807 |
| EcoO65I | GGTNACC | 1 cut(s) | 325 |
| EcoRI | GAATTC | 2 cut(s) | 895, 1300 |
| EcoRII | CCWGG | 8 cut(s) | 918, 931, 1161, 1363, 1459, 1962, 2388, 2447 |
| EcoRV | GATATC | 1 cut(s) | 2334 |
| EcoT14I | CCWWGG | 4 cut(s) | 1075, 1627, 2442, 2808 |
| EcoT22I | ATGCAT | 1 cut(s) | 1861 |
| EcoT38I | GRGCYC | 2 cut(s) | 35, 55 |
| ErhI | CCWWGG | 4 cut(s) | 1075, 1627, 2442, 2808 |
| FaeI | CATG | 8 cut(s) | 24, 758, 989, 1863, 2288, 2446, 2498, 2904 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1095, 1127, 2675, 2707 |
| FatI | CATG | 8 cut(s) | 20, 754, 985, 1859, 2284, 2442, 2494, 2900 |
| FauI | CCCGC | 1 cut(s) | 2172 |
| FbaI | TGATCA | 2 cut(s) | 751, 1393 |
| FblI | GTMKAC | 1 cut(s) | 1321 |
| FokI | GGATG | 9 cut(s) | 103, 461, 598, 935, 1025, 1610, 1706, 2108, 2867 |
| FriOI | GRGCYC | 2 cut(s) | 35, 55 |
| FspBI | CTAG | 6 cut(s) | 578, 1076, 1772, 1926, 2270, 2417 |
| GlaI | GCGC | 6 cut(s) | 95, 161, 643, 1516, 1732, 2846 |
| GsaI | CCCAGC | 2 cut(s) | 52, 144 |
| GsuI | CTGGAG | 4 cut(s) | 315, 1908, 2751, 2763 |
| HaeII | RGCGCY | 3 cut(s) | 645, 1518, 1734 |
| HaeIII | GGCC | 5 cut(s) | 5, 168, 632, 1220, 2447 |
| HhaI | GCGC | 6 cut(s) | 96, 162, 644, 1517, 1733, 2847 |
| Hin1II | CATG | 8 cut(s) | 24, 758, 989, 1863, 2288, 2446, 2498, 2904 |
| Hin6I | GCGC | 6 cut(s) | 94, 160, 642, 1515, 1731, 2845 |
| HinP1I | GCGC | 6 cut(s) | 94, 160, 642, 1515, 1731, 2845 |
| HincII | GTYRAC | 4 cut(s) | 393, 723, 2515, 2776 |
| HindII | GTYRAC | 4 cut(s) | 393, 723, 2515, 2776 |
| HpaI | GTTAAC | 2 cut(s) | 393, 723 |
| HphI | GGTGA | 6 cut(s) | 97, 430, 1475, 2000, 2555, 2875 |
| Hpy166II | GTNNAC | 8 cut(s) | 68, 393, 723, 1322, 1473, 1475, 2515, 2776 |
| Hpy8I | GTNNAC | 8 cut(s) | 68, 393, 723, 1322, 1473, 1475, 2515, 2776 |
| Hpy99I | CGWCG | 2 cut(s) | 76, 1482 |
| HpyCH4III | ACNGT | 7 cut(s) | 72, 559, 976, 1129, 1336, 1932, 2590 |
| HpyCH4IV | ACGT | 8 cut(s) | 679, 719, 1202, 1477, 1593, 1672, 1741, 2239 |
| HpySE526I | ACGT | 8 cut(s) | 679, 719, 1202, 1477, 1593, 1672, 1741, 2239 |
| Hsp92II | CATG | 8 cut(s) | 24, 758, 989, 1863, 2288, 2446, 2498, 2904 |
| HspAI | GCGC | 6 cut(s) | 94, 160, 642, 1515, 1731, 2845 |
| Kpn2I | TCCGGA | 3 cut(s) | 121, 275, 484 |
| KpnI | GGTACC | 1 cut(s) | 1382 |
| Ksp22I | TGATCA | 2 cut(s) | 751, 1393 |
| KspAI | GTTAAC | 2 cut(s) | 393, 723 |
| Kzo9I | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| LmnI | GCTCC | 6 cut(s) | 124, 290, 385, 1333, 2014, 2296 |
| Lsp1109I | GCAGC | 7 cut(s) | 29, 169, 1358, 1430, 1954, 2255, 2809 |
| LweI | GCATC | 8 cut(s) | 81, 620, 1846, 2050, 2137, 2362, 2508, 2551 |
| MabI | ACCWGGT | 1 cut(s) | 1459 |
| MaeI | CTAG | 6 cut(s) | 578, 1076, 1772, 1926, 2270, 2417 |
| MaeII | ACGT | 8 cut(s) | 679, 719, 1202, 1477, 1593, 1672, 1741, 2239 |
| MaeIII | GTNAC | 6 cut(s) | 10, 325, 1594, 1919, 1951, 2318 |
| MalI | GATC | 8 cut(s) | 513, 738, 753, 1395, 1749, 2121, 2415, 2782 |
| MboI | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| MfeI | CAATTG | 1 cut(s) | 58 |
| MflI | RGATCY | 2 cut(s) | 1747, 2119 |
| MhlI | GDGCHC | 4 cut(s) | 35, 55, 111, 206 |
| MlsI | TGGCCA | 2 cut(s) | 5, 2447 |
| MluNI | TGGCCA | 2 cut(s) | 5, 2447 |
| MlyI | GAGTC | 3 cut(s) | 200, 614, 974 |
| MmeI | TCCRAC | 2 cut(s) | 1355, 1671 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 2447 |
| Mph1103I | ATGCAT | 1 cut(s) | 1861 |
| MroI | TCCGGA | 3 cut(s) | 121, 275, 484 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1153, 1304 |
| MscI | TGGCCA | 2 cut(s) | 5, 2447 |
| MseI | TTAA | 4 cut(s) | 392, 722, 840, 2751 |
| MslI | CAYNNNNRTG | 3 cut(s) | 759, 1227, 1854 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 2447 |
| MspA1I | CMGCKG | 2 cut(s) | 1349, 2246 |
| MunI | CAATTG | 1 cut(s) | 58 |
| Mva1269I | GAATGC | 1 cut(s) | 2107 |
| MvaI | CCWGG | 8 cut(s) | 920, 933, 1163, 1365, 1461, 1964, 2390, 2449 |
| MvnI | CGCG | 3 cut(s) | 162, 335, 2847 |
| NciI | CCSGG | 5 cut(s) | 98, 201, 223, 546, 851 |
| NcoI | CCATGG | 1 cut(s) | 2442 |
| NdeII | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| NlaIII | CATG | 8 cut(s) | 24, 758, 989, 1863, 2288, 2446, 2498, 2904 |
| NlaIV | GGNNCC | 4 cut(s) | 235, 387, 1380, 1707 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| NotI | GCGGCCGC | 1 cut(s) | 166 |
| NsiI | ATGCAT | 1 cut(s) | 1861 |
| NspI | RCATGY | 1 cut(s) | 1863 |
| PaeR7I | CTCGAG | 2 cut(s) | 525, 1522 |
| PctI | GAATGC | 1 cut(s) | 2107 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1153, 1304 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1633, 2454 |
| PfoI | TCCNGGA | 1 cut(s) | 1363 |
| PleI | GAGTC | 3 cut(s) | 199, 613, 973 |
| PpsI | GAGTC | 3 cut(s) | 199, 613, 973 |
| PpuMI | RGGWCCY | 1 cut(s) | 1807 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1704 |
| PsiI | TTATAA | 1 cut(s) | 573 |
| Psp124BI | GAGCTC | 1 cut(s) | 35 |
| Psp1406I | AACGTT | 1 cut(s) | 719 |
| Psp5II | RGGWCCY | 1 cut(s) | 1807 |
| Psp6I | CCWGG | 8 cut(s) | 918, 931, 1161, 1363, 1459, 1962, 2388, 2447 |
| PspEI | GGTNACC | 1 cut(s) | 325 |
| PspFI | CCCAGC | 2 cut(s) | 48, 140 |
| PspGI | CCWGG | 8 cut(s) | 918, 931, 1161, 1363, 1459, 1962, 2388, 2447 |
| PspN4I | GGNNCC | 4 cut(s) | 235, 387, 1380, 1707 |
| PspPI | GGNCC | 5 cut(s) | 228, 273, 1219, 1706, 1807 |
| PspPPI | RGGWCCY | 1 cut(s) | 1807 |
| PstI | CTGCAG | 4 cut(s) | 19, 159, 1348, 1387 |
| PstNI | CAGNNNCTG | 2 cut(s) | 884, 1796 |
| PsuI | RGATCY | 2 cut(s) | 1747, 2119 |
| PvuII | CAGCTG | 2 cut(s) | 1349, 2246 |
| RsaI | GTAC | 8 cut(s) | 502, 817, 1131, 1353, 1380, 1474, 1715, 2816 |
| RsaNI | GTAC | 8 cut(s) | 501, 816, 1130, 1352, 1379, 1473, 1714, 2815 |
| RseI | CAYNNNNRTG | 3 cut(s) | 759, 1227, 1854 |
| SacI | GAGCTC | 1 cut(s) | 35 |
| SaqAI | TTAA | 4 cut(s) | 392, 722, 840, 2751 |
| Sau3AI | GATC | 8 cut(s) | 511, 736, 751, 1393, 1747, 2119, 2413, 2780 |
| Sau96I | GGNCC | 5 cut(s) | 228, 273, 1219, 1706, 1807 |
| SchI | GAGTC | 3 cut(s) | 200, 614, 974 |
| SduI | GDGCHC | 4 cut(s) | 35, 55, 111, 206 |
| SexAI | ACCWGGT | 1 cut(s) | 1459 |
| SfaNI | GCATC | 8 cut(s) | 81, 620, 1846, 2050, 2137, 2362, 2508, 2551 |
| SfcI | CTRYAG | 7 cut(s) | 15, 38, 155, 810, 1002, 1344, 1383 |
| Sfr274I | CTCGAG | 2 cut(s) | 525, 1522 |
| SinI | GGWCC | 4 cut(s) | 228, 273, 1706, 1807 |
| SlaI | CTCGAG | 2 cut(s) | 525, 1522 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 759, 1227, 1854 |
| SmlI | CTYRAG | 8 cut(s) | 525, 785, 1053, 1522, 1654, 1666, 2129, 2621 |
| SmoI | CTYRAG | 8 cut(s) | 525, 785, 1053, 1522, 1654, 1666, 2129, 2621 |
| SsiI | CCGC | 8 cut(s) | 162, 165, 169, 335, 377, 446, 2179, 2852 |
| SspI | AATATT | 2 cut(s) | 1570, 2221 |
| SspMI | CTAG | 6 cut(s) | 578, 1076, 1772, 1926, 2270, 2417 |
| SstI | GAGCTC | 1 cut(s) | 35 |
| StyI | CCWWGG | 4 cut(s) | 1075, 1627, 2442, 2808 |
| TaaI | ACNGT | 7 cut(s) | 72, 559, 976, 1129, 1336, 1932, 2590 |
| TaiI | ACGT | 8 cut(s) | 682, 722, 1205, 1480, 1596, 1675, 1744, 2242 |
| TaqI | TCGA | 8 cut(s) | 103, 189, 526, 594, 708, 861, 1492, 1523 |
| TatI | WGTACW | 5 cut(s) | 1129, 1351, 1472, 1713, 2814 |
| TauI | GCSGC | 4 cut(s) | 165, 168, 171, 338 |
| Tru1I | TTAA | 4 cut(s) | 392, 722, 840, 2751 |
| Tru9I | TTAA | 4 cut(s) | 392, 722, 840, 2751 |
| TscAI | CASTG | 5 cut(s) | 178, 211, 979, 1990, 2640 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 7 cut(s) | 17, 157, 1346, 1418, 1967, 2243, 2797 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspGWI | ACGGA | 2 cut(s) | 2443, 2516 |
| TspRI | CASTG | 5 cut(s) | 178, 211, 979, 1990, 2640 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1633, 2454 |
| VpaK11BI | GGWCC | 4 cut(s) | 228, 273, 1706, 1807 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2231 |
| XapI | RAATTY | 4 cut(s) | 895, 927, 1300, 2605 |
| XbaI | TCTAGA | 1 cut(s) | 2416 |
| XceI | RCATGY | 1 cut(s) | 1863 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1630 |
| XhoI | CTCGAG | 2 cut(s) | 525, 1522 |
| XmaJI | CCTAGG | 1 cut(s) | 1075 |
| XmiI | GTMKAC | 1 cut(s) | 1321 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1153, 1304 |
| XspI | CTAG | 6 cut(s) | 578, 1076, 1772, 1926, 2270, 2417 |
| Zsp2I | ATGCAT | 1 cut(s) | 1861 |