Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Reverse (-)

3428164 .. 3432381

Gene Structure 4218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGCCAATGTGACGGCAACATGGTCTCCGAGCTCGCTACAGCTTCGGTGGGCTCTGAATTCCGGCAATTTCAGTAAACCGTCGCCAATTCTGGTGAGGATGCGCCGGGTTCGAGTGCTCTGTGTTGCCCCCGACACAGGGAGGAGTGCTGGGAATAATGGATTGCAGCGCGGCCGCAATGGGAGTTCGTGGGTCGAGTCCAAGCCGGGCACTGCCGATGGCTTGTCCGGGTGGTCCGGTTCCGATGATGAAGACGACTCGCAGAAGAAGAAGAAGAAATGGTCCGGAGGGCTTGTGGGAGCTGGAGTAGCCGGACTGATTCTTGTTGCAGGGGTTACCTTCGCGGCATTGTCTTCAGGGAAAAAAGCGAATACAATACCTAAACCGCAGATGGAGCCGTTAACAACAGAGCAGGAGGTGCTATTGGTGAACGATGACGTCAATGCAGAGGGTGTGGATGAGCAAAGCAACACGAAGCAAGATGGTGGTAGTCCGGAAGAAAAGGCAGGTACTAACAAGGATTATTCTTCATCTCGAGAAATTGATGTGTCTCCTGGTTTATATAGAGTTGGTAATGATTATGATCTAGGGGAGTTGTCAGTCGAAGAGTTTGAGTATGCATCCGGTGGTGGTTCTGAGGCCATCAACAGCACTTCCATTCAAGAAGATTTGCAACGTGAATCAACTTCTGATGACAAGTCAGTCGAGCCTGAAACGTTAACAAGGCAGTTTGATCTGCCTGAATCTGATCCTGGCAATGATTCTTTTCTTGCCTCTGGGCTTGAGGATTCTGATAGTAGCCTCGCTGTAGGTACAGGAGATTTGACTTCTGAACTTAAAGAGAACCCGGTTAGTGTCGAACCAATCAAGTTGCCAGTCTCTGACGCTATCAATTCAAACCTTAGCATTGAACCCCAGGATGAAATTCCTGGGGCAAGTGAAAATCAAACTGCCACTTCTGAGTCTTCTACTGTTATTGCACATGAACACAATGAACCTATAGCCGTGGATGTTTCAGTTTCTTCGGAATCAAACATTCTTTTAGAACCTCAAGTATTGTCTAAAGATAACCTAGGAGTTGTAGCCTCGTCTTCAACCAAAGAAAACCTTGACCCAAGTGAAACAGTACAGGTCTTGGCTGAGGGAAATAGTTCCTCCCTGGAAGTGCATACCATAACTGAAAGTGGGCCATCTGCAACATCTGTATCAGAACAGGCCTATCAAAATGCAAATGAACAATACACATATTATTCTAATGATACAAATACAAGCAAATCACAATTACCAACTCCTCGGAATTCCTTCTCTTCTGCTGGTATACCTGCTCCAACTGTGGTTTCTGCAGCTGTACAGGTGCTTCCTGGAAAGGTTTTGGTACCTGCAGTTGTTGATCAGGTTCAGGGGCAGGCATTAGCAGCTCTACAAGTGTTGAAGGTCGTAGAGGCTGATGTTCAACCTGGTGATTTGTGTACACGTCGTGAATATGCTCGATGGTTGGTATCTGCAAGTAGCGCTCTTTCGAGGAACTCAGTATCTAAAGTATATCCTGCAATGTATATTGAGAATATTACTGAGCTTGCATTTGATGACGTTACACCTGAAGACCCTGATTTCCCTTCCATCCAAGGTTTGGCTGAATCTGGACTTATCTCAAGTAAGCTCTCAAGACGTGATATGGATTCTTCATTGGATGAGGATGAGGATCCGTTGTACTTCTCTCCTGAAAGCGCTCTATCACGTCAAGATCTTGTAAGCTGGAAGATGGCCCTAGAGAAAAGACATCTTCCAGAAGCTGACAGGAAGGTCCTCCACCAAATCTCAGGATTCATTGATACTGATAAGATACACCCAGATGCATGTCCTGCACTTGTTGCTGACCTATCTGTAGAACAGGGTATTATTGCTCTTGCATTTGGTTACACTAGACTTTTTCAGCCAAATAAGCCGGTAACAAAAGCCCAGGCCGCTATTGCTCTTGCAACTGGTGAGTATGCTGATGTAGTTAGCGAGGAGCTTGCACGCATTGAAGCAGAAGCTATGGCAGAAAAGGCTGTTGATGCACATAATGCTTTAGTAGCCCAAGTTGAAAAGGATGTGAATGCAAGTTTTGAGAAGGATCTTTCCCTTGAGAGGGAGAAAATTGATGCTGTGAAGAGAATGGCCGAAGAAGCAAAGCGGGAATTGGAAAGGTTGAGGGCTGAGAGAGAGGCAGATAATATTGCCCTGATGAAGGAACGTGCAGCTGTTGAATCAGAAATGGAAGTTCTAGCAAGGTTGAGGCATGAGGTGGAGGAGCAATTAGAGAACCTAATGAGTAACAAAGTAGAGATATCATTTGAAAAGGAAAGAGTTAGCAAACTTAGGAAAGATGCAGAAAATGAAAGCCAGGAGATTGCTCGTTTGCAGTATGATCTAGAGGTTGAACGGAAAGCCTTGTCCATGGCCAGGGCTTGGGCTGAAGATGAGGCAAAAAGAGCAAGAGAACAAGCTAAATCGCTGGAGGAGGCTAGAGATCGCTGGGAGAGGCATGGCATCAAAGTAGTTGTTGACAATGAACTCCGTGAAGAGGCATTGGGTGAAGCTACTTGGGTTGATGCTGGCAAGTTGTCAGTTGAAGGAACTGTTAGCAGGGCCGAGAATTTGATGGACAAACTCAAGGCAATGGCAGTGGATATAAAAGGAAGAAGCAGAGATGTAATTGATAAAATCATTCAAAAGATAGCCTTGTTTGTATCAAGTTTGAGGGAATGGGTTTCCAAAGCTGGAGAAAGGGCTGGAGAACTTAAAGACGCAGCCATCTCAAAGGCCAACAGATCAGCACAAGAGTTGCAGCAAAGCACCTTGGAGTACAGCTTGGTAGTCAAAGAAGGTGCTAAGCGCATAGCGGATGATTGTAGGGAAGGAGTGGAGAAACTCACCCAAAGGTTCAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

979

Amino Acids

106.48

Weight (kDa)

4.68

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	701, 1802
AatII	GACGTC	1 cut(s)	441
Acc36I	ACCTGC	3 cut(s)	497, 1330, 1387
Acc65I	GGTACC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	1375
AccB7I	CCANNNNNTGG	2 cut(s)	1630, 2451
AccI	GTMKAC	1 cut(s)	1318
AccII	CGCG	2 cut(s)	171, 344
AccIII	TCCGGA	2 cut(s)	284, 493
AciI	CCGC	7 cut(s)	171, 175, 344, 386, 1965, 2176, 2885
AclI	AACGTT	1 cut(s)	716
AclWI	GGATC	4 cut(s)	743, 1697, 1710, 2124
AcoI	YGGCCR	4 cut(s)	3, 172, 2160, 2442
AcsI	RAATTY	4 cut(s)	58, 924, 1297, 2638
AcuI	CTGAAG	3 cut(s)	339, 1620, 2478
AcyI	GRCGYC	1 cut(s)	438
AdeI	CACNNNGTG	1 cut(s)	1478
AfaI	GTAC	8 cut(s)	511, 814, 1128, 1350, 1377, 1471, 1712, 2849
AfeI	AGCGCT	2 cut(s)	1513, 1729
AfiI	CCNNNNNNNGG	9 cut(s)	137, 138, 1630, 2130, 2131, 2230, 2445, 2451, 2566
AflIII	ACRYGT	1 cut(s)	1472
AjiI	CACGTC	3 cut(s)	1475, 1670, 1739
AjuI	GAANNNNNNNTTGG	2 cut(s)	1321, 1353
Alw21I	GWGCWC	2 cut(s)	35, 120
Alw26I	GTCTC	3 cut(s)	30, 555, 883
AlwI	GGATC	4 cut(s)	743, 1697, 1710, 2124
AlwNI	CAGNNNCTG	2 cut(s)	881, 1793
Ama87I	CYCGRG	1 cut(s)	534
Aor13HI	TCCGGA	2 cut(s)	284, 493
Aor51HI	AGCGCT	2 cut(s)	1513, 1729
ApeKI	GCWGC	6 cut(s)	166, 1343, 1415, 2240, 2792, 2830
ApoI	RAATTY	4 cut(s)	58, 924, 1297, 2638
Asp700I	GAANNNNTTC	2 cut(s)	1150, 1301
Asp718I	GGTACC	1 cut(s)	1375
AspA2I	CCTAGG	1 cut(s)	1072
AspLEI	GCGC	5 cut(s)	105, 171, 1514, 1730, 2880
AspS9I	GGNCC	6 cut(s)	234, 282, 1187, 1765, 1804, 2631
AsuC2I	CCSGG	4 cut(s)	107, 207, 229, 848
AsuHPI	GGTGA	6 cut(s)	106, 439, 1472, 1997, 2588, 2908
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	3 cut(s)	234, 282, 1804
AvrII	CCTAGG	1 cut(s)	1072
BaeGI	GKGCMC	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	1188, 1221
BalI	TGGCCA	2 cut(s)	5, 2444
BamHI	GGATCC	1 cut(s)	1702
BanI	GGYRCC	1 cut(s)	1375
BanII	GRGCYC	2 cut(s)	35, 55
BarI	GAAGNNNNNNTAC	2 cut(s)	1341, 1373
BbsI	GAAGAC	5 cut(s)	258, 345, 957, 1083, 1608
Bbv12I	GWGCWC	2 cut(s)	35, 120
BbvCI	CCTCAGC	1 cut(s)	1140
BbvI	GCAGC	6 cut(s)	178, 1355, 1427, 2252, 2804, 2842
BceAI	ACGGC	3 cut(s)	30, 382, 989
BcgI	CGANNNNNNTGC	2 cut(s)	1997, 2031
BclI	TGATCA	1 cut(s)	1390
BcnI	CCSGG	4 cut(s)	107, 207, 229, 848
BcoDI	GTCTC	3 cut(s)	30, 555, 883
BfaI	CTAG	7 cut(s)	587, 1073, 1769, 1923, 2267, 2414, 2508
BfmI	CTRYAG	6 cut(s)	38, 807, 999, 1341, 1380, 1884
BfoI	RGCGCY	2 cut(s)	1515, 1731
BfuAI	ACCTGC	3 cut(s)	497, 1330, 1387
BglII	AGATCT	1 cut(s)	1744
BlnI	CCTAGG	1 cut(s)	1072
BlpI	GCTNAGC	1 cut(s)	2874
Bme18I	GGWCC	3 cut(s)	234, 282, 1804
BmeT110I	CYCGRG	1 cut(s)	534
BmgBI	CACGTC	3 cut(s)	1475, 1670, 1739
BmgT120I	GGNCC	6 cut(s)	234, 282, 1187, 1765, 1804, 2631
BmiI	GGNNCC	4 cut(s)	241, 396, 1377, 1704
BmsI	GCATC	8 cut(s)	90, 629, 1843, 2047, 2134, 2359, 2541, 2584
BpiI	GAAGAC	5 cut(s)	258, 345, 957, 1083, 1608
BpmI	CTGGAG	4 cut(s)	324, 2519, 2784, 2796
Bpu10I	CCTNAGC	2 cut(s)	902, 1140
Bpu1102I	GCTNAGC	1 cut(s)	2874
BpuEI	CTTGAG	6 cut(s)	803, 1035, 1636, 1648, 2147, 2639
BpuMI	CCSGG	4 cut(s)	107, 207, 229, 848
BsaBI	GATNNNNATC	2 cut(s)	582, 1701
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	30
BsaWI	WCCGGW	4 cut(s)	236, 284, 493, 623
BsaXI	ACNNNNNCTCC	6 cut(s)	10, 40, 279, 291, 309, 321
Bsc4I	CCNNNNNNNGG	9 cut(s)	137, 138, 1630, 2130, 2131, 2230, 2445, 2451, 2566
Bse118I	RCCGGY	1 cut(s)	1945
Bse1I	ACTGG	2 cut(s)	875, 1987
Bse3DI	GCAATG	4 cut(s)	184, 763, 1557, 2667
Bse8I	GATNNNNATC	2 cut(s)	582, 1701
BseAI	TCCGGA	2 cut(s)	284, 493
BseJI	GATNNNNATC	2 cut(s)	582, 1701
BseLI	CCNNNNNNNGG	9 cut(s)	137, 138, 1630, 2130, 2131, 2230, 2445, 2451, 2566
BseMI	GCAATG	4 cut(s)	184, 763, 1557, 2667
BseMII	CTCAG	7 cut(s)	627, 951, 1131, 1542, 1563, 1833, 2190
BseNI	ACTGG	2 cut(s)	875, 1987
BseRI	GAGGAG	5 cut(s)	157, 1281, 2024, 2306, 2516
BseSI	GKGCMC	1 cut(s)	212
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	6 cut(s)	178, 1355, 1427, 2252, 2804, 2842
BseYI	CCCAGC	2 cut(s)	149, 2517
BsgI	GTGCAG	2 cut(s)	1848, 2259
Bsh1236I	CGCG	2 cut(s)	171, 344
Bsh1285I	CGRYCG	1 cut(s)	175
BshNI	GGYRCC	1 cut(s)	1375
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	35, 120
BsiHKCI	CYCGRG	1 cut(s)	534
BslI	CCNNNNNNNGG	9 cut(s)	137, 138, 1630, 2130, 2131, 2230, 2445, 2451, 2566
BsmAI	GTCTC	3 cut(s)	30, 555, 883
BsmI	GAATGC	1 cut(s)	2104
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	4 cut(s)	35, 55, 120, 212
Bsp13I	TCCGGA	2 cut(s)	284, 493
Bsp1407I	TGTACA	2 cut(s)	1348, 1469
Bsp1720I	GCTNAGC	1 cut(s)	2874
Bsp19I	CCATGG	1 cut(s)	2439
BspACI	CCGC	7 cut(s)	171, 175, 344, 386, 1965, 2176, 2885
BspCNI	CTCAG	7 cut(s)	628, 952, 1132, 1541, 1564, 1832, 2191
BspEI	TCCGGA	2 cut(s)	284, 493
BspFNI	CGCG	2 cut(s)	171, 344
BspLI	GGNNCC	4 cut(s)	241, 396, 1377, 1704
BspMAI	CTGCAG	2 cut(s)	1345, 1384
BspMI	ACCTGC	3 cut(s)	497, 1330, 1387
BspPI	GGATC	4 cut(s)	743, 1697, 1710, 2124
BspT107I	GGYRCC	1 cut(s)	1375
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	4 cut(s)	184, 763, 1557, 2667
BsrFI	RCCGGY	1 cut(s)	1945
BsrGI	TGTACA	2 cut(s)	1348, 1469
BsrI	ACTGG	2 cut(s)	875, 1987
BssAI	RCCGGY	1 cut(s)	1945
BssNAI	GTATAC	1 cut(s)	1319
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	4 cut(s)	1072, 1624, 2439, 2841
Bst1107I	GTATAC	1 cut(s)	1319
Bst4CI	ACNGT	5 cut(s)	81, 973, 1126, 1333, 2623
Bst6I	CTCTTC	4 cut(s)	600, 1312, 2147, 2559
BstACI	GRCGYC	1 cut(s)	438
BstAPI	GCANNNNNTGC	4 cut(s)	418, 1862, 1871, 2066
BstAUI	TGTACA	2 cut(s)	1348, 1469
BstC8I	GCNNGC	6 cut(s)	35, 1407, 1578, 2016, 2020, 2599
BstDSI	CCRYGG	2 cut(s)	1005, 2439
BstEII	GGTNACC	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	2228
BstFNI	CGCG	2 cut(s)	171, 344
BstH2I	RGCGCY	2 cut(s)	1515, 1731
BstHHI	GCGC	5 cut(s)	105, 171, 1514, 1730, 2880
BstMAI	GTCTC	3 cut(s)	30, 555, 883
BstMCI	CGRYCG	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	1860
BstPI	GGTNACC	1 cut(s)	334
BstSFI	CTRYAG	6 cut(s)	38, 807, 999, 1341, 1380, 1884
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	2 cut(s)	171, 344
BstV1I	GCAGC	6 cut(s)	178, 1355, 1427, 2252, 2804, 2842
BstV2I	GAAGAC	5 cut(s)	258, 345, 957, 1083, 1608
BstX2I	RGATCY	3 cut(s)	1702, 1744, 2116
BstYI	RGATCY	3 cut(s)	1702, 1744, 2116
BstZ17I	GTATAC	1 cut(s)	1319
BstZI	CGGCCG	1 cut(s)	172
BtgI	CCRYGG	2 cut(s)	1005, 2439
BtrI	CACGTC	3 cut(s)	1475, 1670, 1739
BtsI	GCAGTG	2 cut(s)	210, 2673
BtsIMutI	CAGTG	2 cut(s)	210, 2673
BveI	ACCTGC	3 cut(s)	497, 1330, 1387
Cac8I	GCNNGC	6 cut(s)	35, 1407, 1578, 2016, 2020, 2599
CaiI	CAGNNNCTG	2 cut(s)	881, 1793
CciNI	GCGGCCGC	1 cut(s)	172
CfoI	GCGC	5 cut(s)	105, 171, 1514, 1730, 2880
Cfr10I	RCCGGY	1 cut(s)	1945
Cfr13I	GGNCC	6 cut(s)	234, 282, 1187, 1765, 1804, 2631
CseI	GACGC	2 cut(s)	893, 2798
CsiI	ACCWGGT	1 cut(s)	1456
Csp6I	GTAC	8 cut(s)	510, 813, 1127, 1349, 1376, 1470, 1711, 2848
CspCI	CAANNNNNGTGG	2 cut(s)	2649, 2684
CviAII	CATG	7 cut(s)	21, 983, 1857, 2282, 2440, 2528, 2934
CviQI	GTAC	8 cut(s)	510, 813, 1127, 1349, 1376, 1470, 1711, 2848
DraIII	CACNNNGTG	1 cut(s)	1478
DrdI	GACNNNNNNGTC	2 cut(s)	701, 1802
DseDI	GACNNNNNNGTC	2 cut(s)	701, 1802
EaeI	YGGCCR	4 cut(s)	3, 172, 2160, 2442
EagI	CGGCCG	1 cut(s)	172
Eam1104I	CTCTTC	4 cut(s)	600, 1312, 2147, 2559
EarI	CTCTTC	4 cut(s)	600, 1312, 2147, 2559
Ecl136II	GAGCTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	4 cut(s)	1072, 1624, 2439, 2841
Eco147I	AGGCCT	1 cut(s)	1217
Eco24I	GRGCYC	2 cut(s)	35, 55
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	2331
Eco47I	GGWCC	3 cut(s)	234, 282, 1804
Eco47III	AGCGCT	2 cut(s)	1513, 1729
Eco52I	CGGCCG	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	339, 1620, 2478
Eco88I	CYCGRG	1 cut(s)	534
Eco91I	GGTNACC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	2228
EcoO109I	RGGNCCY	1 cut(s)	1804
EcoO65I	GGTNACC	1 cut(s)	334
EcoRI	GAATTC	2 cut(s)	58, 1297
EcoRV	GATATC	1 cut(s)	2331
EcoT14I	CCWWGG	4 cut(s)	1072, 1624, 2439, 2841
EcoT22I	ATGCAT	2 cut(s)	622, 1858
EcoT38I	GRGCYC	2 cut(s)	35, 55
ErhI	CCWWGG	4 cut(s)	1072, 1624, 2439, 2841
FaeI	CATG	7 cut(s)	24, 986, 1860, 2285, 2443, 2531, 2937
FalI	AAGNNNNNCTT	4 cut(s)	1092, 1124, 2708, 2740
FatI	CATG	7 cut(s)	20, 982, 1856, 2281, 2439, 2527, 2933
FauI	CCCGC	1 cut(s)	2169
FbaI	TGATCA	1 cut(s)	1390
FblI	GTMKAC	1 cut(s)	1318
FriOI	GRGCYC	2 cut(s)	35, 55
FspBI	CTAG	7 cut(s)	587, 1073, 1769, 1923, 2267, 2414, 2508
GlaI	GCGC	5 cut(s)	104, 170, 1513, 1729, 2879
GsaI	CCCAGC	2 cut(s)	153, 2521
GsuI	CTGGAG	4 cut(s)	324, 2519, 2784, 2796
HaeII	RGCGCY	2 cut(s)	1515, 1731
HgaI	GACGC	2 cut(s)	893, 2798
HhaI	GCGC	5 cut(s)	105, 171, 1514, 1730, 2880
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	7 cut(s)	24, 986, 1860, 2285, 2443, 2531, 2937
Hin6I	GCGC	5 cut(s)	103, 169, 1512, 1728, 2878
HinP1I	GCGC	5 cut(s)	103, 169, 1512, 1728, 2878
HincII	GTYRAC	3 cut(s)	402, 720, 2548
HindII	GTYRAC	3 cut(s)	402, 720, 2548
HpaI	GTTAAC	2 cut(s)	402, 720
HphI	GGTGA	6 cut(s)	106, 439, 1472, 1997, 2588, 2908
Hpy166II	GTNNAC	8 cut(s)	77, 402, 430, 720, 1319, 1470, 1472, 2548
Hpy8I	GTNNAC	8 cut(s)	77, 402, 430, 720, 1319, 1470, 1472, 2548
Hpy99I	CGWCG	2 cut(s)	85, 1479
HpyCH4III	ACNGT	5 cut(s)	81, 973, 1126, 1333, 2623
HpyCH4IV	ACGT	8 cut(s)	438, 676, 716, 1474, 1590, 1669, 1738, 2236
HpySE526I	ACGT	8 cut(s)	438, 676, 716, 1474, 1590, 1669, 1738, 2236
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	7 cut(s)	24, 986, 1860, 2285, 2443, 2531, 2937
HspAI	GCGC	5 cut(s)	103, 169, 1512, 1728, 2878
Kpn2I	TCCGGA	2 cut(s)	284, 493
KpnI	GGTACC	1 cut(s)	1379
Ksp22I	TGATCA	1 cut(s)	1390
KspAI	GTTAAC	2 cut(s)	402, 720
LmnI	GCTCC	5 cut(s)	299, 394, 1330, 2011, 2293
Lsp1109I	GCAGC	6 cut(s)	178, 1355, 1427, 2252, 2804, 2842
LweI	GCATC	8 cut(s)	90, 629, 1843, 2047, 2134, 2359, 2541, 2584
MabI	ACCWGGT	1 cut(s)	1456
MaeI	CTAG	7 cut(s)	587, 1073, 1769, 1923, 2267, 2414, 2508
MaeII	ACGT	8 cut(s)	438, 676, 716, 1474, 1590, 1669, 1738, 2236
MaeIII	GTNAC	6 cut(s)	10, 334, 1591, 1916, 1948, 2315
MflI	RGATCY	3 cut(s)	1702, 1744, 2116
MhlI	GDGCHC	4 cut(s)	35, 55, 120, 212
MlsI	TGGCCA	2 cut(s)	5, 2444
MluNI	TGGCCA	2 cut(s)	5, 2444
MlyI	GAGTC	3 cut(s)	206, 251, 971
MmeI	TCCRAC	1 cut(s)	1352
Mox20I	TGGCCA	2 cut(s)	5, 2444
Mph1103I	ATGCAT	2 cut(s)	622, 1858
MroI	TCCGGA	2 cut(s)	284, 493
MroXI	GAANNNNTTC	2 cut(s)	1150, 1301
MscI	TGGCCA	2 cut(s)	5, 2444
MseI	TTAA	4 cut(s)	401, 719, 837, 2784
MslI	CAYNNNNRTG	1 cut(s)	1851
Msp20I	TGGCCA	2 cut(s)	5, 2444
MspA1I	CMGCKG	2 cut(s)	1346, 2243
Mva1269I	GAATGC	1 cut(s)	2104
MvnI	CGCG	2 cut(s)	171, 344
NciI	CCSGG	4 cut(s)	107, 207, 229, 848
NcoI	CCATGG	1 cut(s)	2439
NlaIII	CATG	7 cut(s)	24, 986, 1860, 2285, 2443, 2531, 2937
NlaIV	GGNNCC	4 cut(s)	241, 396, 1377, 1704
NmeAIII	GCCGAG	1 cut(s)	2659
NmuCI	GTSAC	1 cut(s)	10
NotI	GCGGCCGC	1 cut(s)	172
NsiI	ATGCAT	2 cut(s)	622, 1858
NspI	RCATGY	1 cut(s)	1860
PaeR7I	CTCGAG	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	1217
PctI	GAATGC	1 cut(s)	2104
PdmI	GAANNNNTTC	2 cut(s)	1150, 1301
PflMI	CCANNNNNTGG	2 cut(s)	1630, 2451
PfoI	TCCNGGA	1 cut(s)	1360
PleI	GAGTC	3 cut(s)	205, 251, 970
PpsI	GAGTC	3 cut(s)	205, 251, 970
PpuMI	RGGWCCY	1 cut(s)	1804
Psp124BI	GAGCTC	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	716
Psp5II	RGGWCCY	1 cut(s)	1804
PspEI	GGTNACC	1 cut(s)	334
PspFI	CCCAGC	2 cut(s)	149, 2517
PspN4I	GGNNCC	4 cut(s)	241, 396, 1377, 1704
PspPI	GGNCC	6 cut(s)	234, 282, 1187, 1765, 1804, 2631
PspPPI	RGGWCCY	1 cut(s)	1804
PstI	CTGCAG	2 cut(s)	1345, 1384
PstNI	CAGNNNCTG	2 cut(s)	881, 1793
PsuI	RGATCY	3 cut(s)	1702, 1744, 2116
PvuII	CAGCTG	2 cut(s)	1346, 2243
RsaI	GTAC	8 cut(s)	511, 814, 1128, 1350, 1377, 1471, 1712, 2849
RsaNI	GTAC	8 cut(s)	510, 813, 1127, 1349, 1376, 1470, 1711, 2848
RseI	CAYNNNNRTG	1 cut(s)	1851
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	4 cut(s)	401, 719, 837, 2784
Sau96I	GGNCC	6 cut(s)	234, 282, 1187, 1765, 1804, 2631
SchI	GAGTC	3 cut(s)	206, 251, 971
SduI	GDGCHC	4 cut(s)	35, 55, 120, 212
SexAI	ACCWGGT	1 cut(s)	1456
SfaNI	GCATC	8 cut(s)	90, 629, 1843, 2047, 2134, 2359, 2541, 2584
SfcI	CTRYAG	6 cut(s)	38, 807, 999, 1341, 1380, 1884
Sfr274I	CTCGAG	1 cut(s)	534
SinI	GGWCC	3 cut(s)	234, 282, 1804
SlaI	CTCGAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	1851
SmlI	CTYRAG	7 cut(s)	534, 782, 1050, 1651, 1663, 2126, 2654
SmoI	CTYRAG	7 cut(s)	534, 782, 1050, 1651, 1663, 2126, 2654
SseBI	AGGCCT	1 cut(s)	1217
SsiI	CCGC	7 cut(s)	171, 175, 344, 386, 1965, 2176, 2885
SspI	AATATT	2 cut(s)	1567, 2218
SspMI	CTAG	7 cut(s)	587, 1073, 1769, 1923, 2267, 2414, 2508
SstI	GAGCTC	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	1217
StyI	CCWWGG	4 cut(s)	1072, 1624, 2439, 2841
TaaI	ACNGT	5 cut(s)	81, 973, 1126, 1333, 2623
TaiI	ACGT	8 cut(s)	441, 679, 719, 1477, 1593, 1672, 1741, 2239
TaqI	TCGA	8 cut(s)	112, 195, 535, 603, 705, 858, 1489, 1520
TatI	WGTACW	5 cut(s)	1126, 1348, 1469, 1710, 2847
TauI	GCSGC	4 cut(s)	174, 177, 347, 1967
Tru1I	TTAA	4 cut(s)	401, 719, 837, 2784
Tru9I	TTAA	4 cut(s)	401, 719, 837, 2784
TscAI	CASTG	2 cut(s)	217, 2673
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	6 cut(s)	166, 1343, 1415, 2240, 2792, 2830
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	3 cut(s)	1695, 2440, 2549
TspRI	CASTG	2 cut(s)	217, 2673
Van91I	CCANNNNNTGG	2 cut(s)	1630, 2451
VpaK11BI	GGWCC	3 cut(s)	234, 282, 1804
XagI	CCTNNNNNAGG	1 cut(s)	2228
XapI	RAATTY	4 cut(s)	58, 924, 1297, 2638
XbaI	TCTAGA	1 cut(s)	2413
XceI	RCATGY	1 cut(s)	1860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1627
XhoI	CTCGAG	1 cut(s)	534
XmaJI	CCTAGG	1 cut(s)	1072
XmiI	GTMKAC	1 cut(s)	1318
XmnI	GAANNNNTTC	2 cut(s)	1150, 1301
XspI	CTAG	7 cut(s)	587, 1073, 1769, 1923, 2267, 2414, 2508
ZraI	GACGTC	1 cut(s)	439
Zsp2I	ATGCAT	2 cut(s)	622, 1858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.