Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005758.1

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1349

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1115 bp

gattcattgatactgataagatacacccagatgcatgtccagcacttgttgctgacctatctggagaacagggtattattgctcttgcatttggttacactagactgtttcagccaaataagccggtaacaaaagcccaggctgctattgctcttgcaactggtgagtatgccgatgtagttagcgaggagcttgcacgcattgaagcagaagctatggcagaaaaggctgttgatgcacataatgctttagtagcccaagttgaaaaggatgtgaatgcaagttttgagaaagatctttcccttgagagggaaaaaattgatgctgtggagagaatggctgaagaagcaaagcgggaattggaaaggttgagggctgagagagaggcagataatattgccctgatgaaggaacgtgcagctgttgaatcagaaatggaagttctagcaaggttgaggcatgaggtggaggagcaattagagaacctaatgagtaacaaagtagagatatcatttgaaaaggaaagagttagcaaacttagaaaagatgcagaaaatgaaagccaggagattgctcgtttgcagtatgatctagaggttgaacggaaagccttgtccatggccagggcttgggctgaagatgaggcaaaaagagcaagagaacaagctaaatcgctggaggaggctagagatcgctgggagaggcatggcatcaaagtagttgttgacaatgacctccgtgaagaggcattgggtgaagctacttgggttgatgctggcaagttgtcagttgaaggaactgttagcagggctgagaatttgatggacaaactcaaggcaatggcagtggatataaaaggaagaagcagagatgtaattgataaaatcattcaaaagatagccttgtttgtatcaagtttgagggaatgggtttccaaagctggagaaagggctggagaacttaaagacacagccatctcaaaggtcaacagatcagcacaagagttgcagcaaagcaccttggagtacagcttggtagtcaaagaaggtgctaagcgcgtagcggatgattgtagggaaggagtggagaaactcacccaaaggttcaagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

370

Amino Acids

41.65

Weight (kDa)

5.07

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccII	CGCG	1 cut(s)	1058
AciI	CCGC	2 cut(s)	354, 1063
AcoI	YGGCCR	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	816
AcuI	CTGAAG	2 cut(s)	362, 656
AfaI	GTAC	1 cut(s)	1027
AfiI	CCNNNNNNNGG	6 cut(s)	308, 309, 408, 623, 629, 744
AgsI	TTSAA	8 cut(s)	205, 265, 427, 517, 601, 793, 892, 1107
AjnI	CCWGG	3 cut(s)	137, 563, 622
AluBI	AGCT	7 cut(s)	192, 214, 421, 667, 760, 940, 1031
AluI	AGCT	7 cut(s)	192, 214, 421, 667, 760, 940, 1031
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	3 cut(s)	142, 418, 1008
ApoI	RAATTY	1 cut(s)	816
AspLEI	GCGC	1 cut(s)	1058
AsuHPI	GGTGA	3 cut(s)	175, 766, 1086
BalI	TGGCCA	1 cut(s)	622
BbvI	GCAGC	3 cut(s)	129, 430, 1020
BccI	CCATC	2 cut(s)	816, 982
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	3 cut(s)	139, 565, 624
BfaI	CTAG	4 cut(s)	101, 445, 592, 686
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	3 cut(s)	143, 419, 1009
BlpI	GCTNAGC	1 cut(s)	1052
BlsI	GCNGC	3 cut(s)	144, 420, 1010
Bme1390I	CCNGG	3 cut(s)	139, 565, 624
BmrFI	CCNGG	3 cut(s)	139, 565, 624
BmsI	GCATC	6 cut(s)	21, 225, 312, 537, 719, 762
BpmI	CTGGAG	4 cut(s)	83, 697, 962, 974
Bpu1102I	GCTNAGC	1 cut(s)	1052
BpuEI	CTTGAG	2 cut(s)	325, 817
BsaJI	CCNNGG	4 cut(s)	137, 617, 623, 1019
Bsc4I	CCNNNNNNNGG	6 cut(s)	308, 309, 408, 623, 629, 744
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	845
BseBI	CCWGG	3 cut(s)	139, 565, 624
BseDI	CCNNGG	4 cut(s)	137, 617, 623, 1019
BseGI	GGATG	2 cut(s)	276, 1071
BseLI	CCNNNNNNNGG	6 cut(s)	308, 309, 408, 623, 629, 744
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	2 cut(s)	368, 803
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	3 cut(s)	202, 484, 694
BseXI	GCAGC	3 cut(s)	129, 430, 1020
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	1058
BshFI	GGCC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	6 cut(s)	308, 309, 408, 623, 629, 744
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	294, 588, 690, 991
Bsp1720I	GCTNAGC	1 cut(s)	1052
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	2 cut(s)	354, 1063
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	2 cut(s)	369, 804
BspFNI	CGCG	1 cut(s)	1058
BsrDI	GCAATG	1 cut(s)	845
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	137, 617, 623, 1019
BssMI	GATC	4 cut(s)	294, 588, 690, 991
BssT1I	CCWWGG	2 cut(s)	617, 1019
Bst2UI	CCWGG	3 cut(s)	139, 565, 624
Bst4CI	ACNGT	2 cut(s)	107, 801
Bst6I	CTCTTC	1 cut(s)	737
BstAPI	GCANNNNNTGC	2 cut(s)	49, 244
BstC8I	GCNNGC	3 cut(s)	194, 198, 777
BstDEI	CTNAG	4 cut(s)	377, 538, 812, 1052
BstDSI	CCRYGG	1 cut(s)	617
BstENI	CCTNNNNNAGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	276, 1071
BstFNI	CGCG	1 cut(s)	1058
BstHHI	GCGC	1 cut(s)	1058
BstKTI	GATC	4 cut(s)	297, 591, 693, 994
BstMBI	GATC	4 cut(s)	294, 588, 690, 991
BstNI	CCWGG	3 cut(s)	139, 565, 624
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	3 cut(s)	137, 563, 622
BstUI	CGCG	1 cut(s)	1058
BstV1I	GCAGC	3 cut(s)	129, 430, 1020
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	622
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	2 cut(s)	276, 1071
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	1 cut(s)	851
Cac8I	GCNNGC	3 cut(s)	194, 198, 777
CfoI	GCGC	1 cut(s)	1058
Cfr10I	RCCGGY	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	1026
CspCI	CAANNNNNGTGG	2 cut(s)	827, 862
CviAII	CATG	5 cut(s)	35, 460, 618, 706, 1112
CviQI	GTAC	1 cut(s)	1026
DdeI	CTNAG	4 cut(s)	377, 538, 812, 1052
DpnI	GATC	4 cut(s)	296, 590, 692, 993
DpnII	GATC	4 cut(s)	294, 588, 690, 991
EaeI	YGGCCR	1 cut(s)	620
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	2 cut(s)	617, 1019
Eco32I	GATATC	1 cut(s)	509
Eco57I	CTGAAG	2 cut(s)	362, 656
EcoNI	CCTNNNNNAGG	1 cut(s)	406
EcoRII	CCWGG	3 cut(s)	137, 563, 622
EcoRV	GATATC	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	617, 1019
EcoT22I	ATGCAT	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	617, 1019
FaeI	CATG	5 cut(s)	38, 463, 621, 709, 1115
FalI	AAGNNNNNCTT	2 cut(s)	886, 918
FatI	CATG	5 cut(s)	34, 459, 617, 705, 1111
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	3 cut(s)	143, 419, 1009
FokI	GGATG	2 cut(s)	283, 1078
Fsp4HI	GCNGC	3 cut(s)	143, 419, 1009
FspBI	CTAG	4 cut(s)	101, 445, 592, 686
GlaI	GCGC	1 cut(s)	1057
GluI	GCNGC	3 cut(s)	143, 419, 1009
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	4 cut(s)	83, 697, 962, 974
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	1 cut(s)	1058
Hin1II	CATG	5 cut(s)	38, 463, 621, 709, 1115
Hin6I	GCGC	1 cut(s)	1056
HinP1I	GCGC	1 cut(s)	1056
HincII	GTYRAC	2 cut(s)	726, 987
HindII	GTYRAC	2 cut(s)	726, 987
HinfI	GANTC	2 cut(s)	2, 427
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	3 cut(s)	175, 766, 1086
Hpy166II	GTNNAC	2 cut(s)	726, 987
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	3 cut(s)	62, 592, 1107
Hpy8I	GTNNAC	2 cut(s)	726, 987
HpyAV	CCTTC	4 cut(s)	402, 787, 1039, 1072
HpyCH4III	ACNGT	2 cut(s)	107, 801
HpyCH4IV	ACGT	1 cut(s)	414
HpyF3I	CTNAG	4 cut(s)	377, 538, 812, 1052
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	5 cut(s)	38, 463, 621, 709, 1115
HspAI	GCGC	1 cut(s)	1056
Kzo9I	GATC	4 cut(s)	294, 588, 690, 991
LmnI	GCTCC	2 cut(s)	189, 471
Lsp1109I	GCAGC	3 cut(s)	129, 430, 1020
LweI	GCATC	6 cut(s)	21, 225, 312, 537, 719, 762
MaeI	CTAG	4 cut(s)	101, 445, 592, 686
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	3 cut(s)	94, 126, 493
MalI	GATC	4 cut(s)	296, 590, 692, 993
MboI	GATC	4 cut(s)	294, 588, 690, 991
MboII	GAAGA	4 cut(s)	355, 649, 754, 872
MflI	RGATCY	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	622
MluCI	AATT	5 cut(s)	317, 358, 475, 816, 875
MluNI	TGGCCA	1 cut(s)	622
Mox20I	TGGCCA	1 cut(s)	622
Mph1103I	ATGCAT	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	622
MseI	TTAA	1 cut(s)	962
MslI	CAYNNNNRTG	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	622
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	3 cut(s)	139, 565, 624
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	3 cut(s)	139, 565, 624
MvnI	CGCG	1 cut(s)	1058
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	4 cut(s)	294, 588, 690, 991
NlaIII	CATG	5 cut(s)	38, 463, 621, 709, 1115
NsiI	ATGCAT	1 cut(s)	36
NspI	RCATGY	1 cut(s)	38
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	2, 427
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	144, 420, 1010
Psp6I	CCWGG	3 cut(s)	137, 563, 622
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	3 cut(s)	137, 563, 622
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	1027
RsaNI	GTAC	1 cut(s)	1026
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	962
SatI	GCNGC	3 cut(s)	143, 419, 1009
Sau3AI	GATC	4 cut(s)	294, 588, 690, 991
ScrFI	CCNGG	3 cut(s)	139, 565, 624
SfaNI	GCATC	6 cut(s)	21, 225, 312, 537, 719, 762
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	304, 832
SmoI	CTYRAG	2 cut(s)	304, 832
Sse9I	AATT	5 cut(s)	317, 358, 475, 816, 875
SsiI	CCGC	2 cut(s)	354, 1063
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	4 cut(s)	101, 445, 592, 686
StyD4I	CCNGG	3 cut(s)	137, 563, 622
StyI	CCWWGG	2 cut(s)	617, 1019
TaaI	ACNGT	2 cut(s)	107, 801
TaiI	ACGT	1 cut(s)	417
TasI	AATT	5 cut(s)	317, 358, 475, 816, 875
TatI	WGTACW	1 cut(s)	1025
TfiI	GAWTC	2 cut(s)	2, 427
Tru1I	TTAA	1 cut(s)	962
Tru9I	TTAA	1 cut(s)	962
TscAI	CASTG	1 cut(s)	851
TseI	GCWGC	3 cut(s)	142, 418, 1008
TspDTI	ATGAA	2 cut(s)	421, 572
TspGWI	ACGGA	2 cut(s)	618, 727
TspRI	CASTG	1 cut(s)	851
Van91I	CCANNNNNTGG	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	406
XapI	RAATTY	1 cut(s)	816
XbaI	TCTAGA	1 cut(s)	591
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	4 cut(s)	101, 445, 592, 686
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.