Rmu_co7992088.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7992088.1
OG0003381
Physical Location & Seq
Forward (+)
1 .. 521
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7992088.1_g000001.1.cds

Sequence Viewer

Length: 261 bp
aggctgatgttcaacctggtgatttgtgtacacgtcgtgaatatgctcgatggttggtatctgcaagtagcgctctctcgaggaactcagtatctaaagtatatcctgcaatgtatattgagaatattactgagcttgcatttgatgacgttacacctgaagaccctgatttcccttccatccaaggtttggctgaatctggacttatctcaagtaagctctcaagacgtgatatggattcttcgttggatgaggacgagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLH

Protein Analysis

86

Amino Acids

9.53

Weight (kDa)

4.24

Isoelectric Point (pI)

81.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 30
AfeI AGCGCT 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 2 cut(s) 34, 229
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 2 cut(s) 135, 219
AluI AGCT 2 cut(s) 135, 219
Ama87I CYCGRG 1 cut(s) 78
Aor51HI AGCGCT 1 cut(s) 72
AspLEI GCGC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 167
BccI CCATC 2 cut(s) 44, 187
BciT130I CCWGG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 78
BmgBI CACGTC 2 cut(s) 34, 229
BmrFI CCNGG 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 167
BpuEI CTTGAG 2 cut(s) 195, 207
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 179, 255
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 101, 122
BsiHKCI CYCGRG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 28
BspCNI CTCAG 2 cut(s) 100, 123
BsrDI GCAATG 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 17
BstAUI TGTACA 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 87, 131
BstF5I GGATG 2 cut(s) 179, 255
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 167
BtrI CACGTC 2 cut(s) 34, 229
BtsCI GGATG 2 cut(s) 179, 255
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 1 cut(s) 29
CviJI RGCY 4 cut(s) 4, 135, 193, 219
CviKI_1 RGCY 4 cut(s) 4, 135, 193, 219
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 87, 131
DraIII CACNNNGTG 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 183
Eco47III AGCGCT 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaiI YATR 4 cut(s) 44, 102, 116, 235
FokI GGATG 1 cut(s) 166
GlaI GCGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 74
HhaI GCGC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HinfI GANTC 2 cut(s) 196, 238
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 29, 31
Hpy188III TCNNGA 4 cut(s) 37, 78, 200, 224
Hpy8I GTNNAC 2 cut(s) 29, 31
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 3 cut(s) 33, 149, 228
HpyCH4V TGCA 3 cut(s) 64, 109, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 2 cut(s) 87, 131
HpySE526I ACGT 3 cut(s) 33, 149, 228
HspAI GCGC 1 cut(s) 71
LpnPI CCDG 6 cut(s) 2, 29, 119, 170, 179, 185
MabI ACCWGGT 1 cut(s) 15
MaeII ACGT 3 cut(s) 33, 149, 228
MaeIII GTNAC 1 cut(s) 150
MboII GAAGA 2 cut(s) 172, 233
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 3 cut(s) 74, 246, 252
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 70
PaeR7I CTCGAG 1 cut(s) 78
PfeI GAWTC 2 cut(s) 196, 238
PflMI CCANNNNNTGG 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 17
SetI ASST 8 cut(s) 18, 36, 137, 152, 159, 189, 221, 231
SexAI ACCWGGT 1 cut(s) 15
Sfr274I CTCGAG 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 3 cut(s) 78, 210, 222
SmoI CTYRAG 3 cut(s) 78, 210, 222
SspI AATATT 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 3 cut(s) 36, 152, 231
TaqI TCGA 2 cut(s) 48, 79
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 2 cut(s) 196, 238
Van91I CCANNNNNTGG 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 186
XhoI CTCGAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.