Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Forward (+)

64502580 .. 64507360

Gene Structure 4781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGGCCAATGTGACTGCAGCATGGTCTCCGAGCTCGCTACAGCTTCGCTGGGCTCTCAATTGCAGTAAACCGTCGCCAATTCTGGTGAGGATGCGCCGGGTTCGAGTGCTCTGTGTTGCTCCGGACACGGGGAGGAGTGCTGGGAATAATGGACTGCAGCGCGGCGGCCGCAATGGGAGTTCGTGGGTCGAGTCCAAGCCGGGCACTGCCGATGGCTTGTCCGGGTGGTCCGGTTCCGATGATGAAGACCACTCGCAGAAGAAGAAGAAATGGTCCGGAGGGCTTGTGGGAGCTGGAGTAGCGGGAGTGATTCTTGTTGCAGGGGTTACCTTCGCGGCATTGTCTTCTGGAAAAAAAGCGAATACAATACCTAAACCGCAGATGGAGCCGTTAACGACAGAGCAGGAGGTGCTATTGGTGAATGATGATGTCGGTGCAGAGGGTGCGGATGAGCAAAGCAACACGAAGCAAGATGGTGGTAGTCCGGAAGAAAAGGCAGCTGTACAGGTGCTTCCTGGAAAGGTTTTGGTACCTGCAGTTGTTGATCAGGTTCAGGGGCAGGCATTAGCAGCTCTACAAGTGTTGAAGGTCGTAGAGGCTGATGTTCAACCTGGTGATTTGTGTACACGTCGTGAATATGCTCGATGGTTGGTATCTGCAAGTAGCGCTCTCTCGAGGAACTCAGTATCTAAAGTATATCCTGCAATGTATATTGAGAATATTACTGAGCTTGCATTTGATGACGTTACACCTGAAGACCCTGATTTCCCTTCCATCCAAGGTTTGGCTGAATCTGGACTTATCTCAAGTAAGCTCTCAAGACGTGATATGGATTCTTCGTTGGATGAGGACGAGGGTCCATTGTACTTCTCTCCTGAAAGCGCTCTATCACGTCAAGATCTTGTAAGCTGGAAGATGACCCTAGAGAAAAGACATCTTCCAGAAGCTGACAGGAAGGTCCTCCACCAAATCTCAGGATTCATTGATACTGATAAGATACACCCAGATGCATGTCCTGCACTTGTTGCTGACCTATCTGGAGAACAGGGTATTATTGCTCTTGCATTTGGTTACACTAGACTGTTTCAGCCAAATAAGCCGGTAACAAAAGCCCAGGCTGCTATTGCTCTTGCAACTGGTGAGTATGCCGATGTAGTTAGCGAGGAGCTTGCACGCATTGAAGCAGAAGCTATGGCAGAAAAGGCTGTTGATGCACATAATGCTTTAGTAGCCCAAGTTGAAAAGGATGTGAATGCAAGTTTTGAGAAGGATCTTTCCCTTGAGAGGGAAAAAATTGATGCTGTGGAGAGAATGGCTGAAGAAGCAAAGCGGGAATTGGAAAGGTTGAGGGCTGAGAGAGAGGCAGATAATATTGCCCTGATGAAGGAACGTGCAGCTGTTGAATCAGAAATGGAAGTTCTAGCAAGGTTGAGGCATGAGGTGGAGGAGCAATTAGAGAACCTAATGAGTAACAAAGTAGAGATATCATTTGAAAAGGAAAGAGTTAGCAAACTTAGAAAAGATGCAGAAAATGAAAGCCAGGAGATTGCTCGTTTGCAGTATGATCTAGAGGTTGAACGGAAAGCCTTGTCCATGGCCAGGGCTTGGGCTGAAGATGAGGCAAAAAGAGCAAGAGAACAAGCTAAATCCCTGGAGGAGGCTAGAGATCGCTGGGAGAGGCATGGCATCAAAGTAGTTGTTGACAATGACCTCCGTGAAGAGGCATTGGGTGAAGCTACTTGGGTTGATGCTGGCAAGTTGTCAGTTGAAGGAACTGTTAGCAGGGCTGAGAATTTGATGGACAAACTCAAGGCAATGGCAGTGGATATAAAAGGAAGAAGCAGAGATGTAATTGATAAAATCATTCAAAAGATAGCCTTGTTTGTATCAAGTTTGAGGGAATGGGTTTCCAAAGCTGGAGAAAGGGCTGGAGAACTTAAAGACACAGCCATCTCAAAGGTCAACAGATCAGCACAAGAGTTGCAGCAAAGCACCTTGGAGTACAGCTTGGTAGTCAAAGAAGGTGCTAAGCGCGTAGCGGATGATTGTAGGGAAGGAGTGGAGAAACTCACCCAAAGGTTCAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

696

Amino Acids

76.49

Weight (kDa)

5.11

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	956
Acc36I	ACCTGC	1 cut(s)	541
Acc65I	GGTACC	1 cut(s)	529
AccB1I	GGYRCC	1 cut(s)	529
AccB7I	CCANNNNNTGG	2 cut(s)	784, 1605
AccII	CGCG	3 cut(s)	162, 335, 2034
AccIII	TCCGGA	3 cut(s)	121, 275, 484
AciI	CCGC	9 cut(s)	162, 165, 169, 302, 335, 377, 446, 1330, 2039
AclWI	GGATC	1 cut(s)	1278
AcoI	YGGCCR	3 cut(s)	3, 166, 1596
AcsI	RAATTY	1 cut(s)	1792
AcuI	CTGAAG	3 cut(s)	774, 1338, 1632
AdeI	CACNNNGTG	1 cut(s)	632
AfaI	GTAC	5 cut(s)	504, 531, 625, 866, 2003
AfeI	AGCGCT	2 cut(s)	667, 883
AfiI	CCNNNNNNNGG	9 cut(s)	128, 784, 1284, 1285, 1384, 1599, 1605, 1657, 1720
AflIII	ACRYGT	1 cut(s)	626
AjiI	CACGTC	3 cut(s)	629, 824, 893
AjnI	CCWGG	6 cut(s)	514, 610, 1113, 1539, 1598, 1650
Alw21I	GWGCWC	2 cut(s)	35, 111
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	1278
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	1 cut(s)	673
Aor13HI	TCCGGA	3 cut(s)	121, 275, 484
Aor51HI	AGCGCT	2 cut(s)	667, 883
AoxI	GGCC	3 cut(s)	3, 166, 1596
ApeKI	GCWGC	7 cut(s)	17, 157, 497, 569, 1118, 1394, 1984
ApoI	RAATTY	1 cut(s)	1792
Asp718I	GGTACC	1 cut(s)	529
AspLEI	GCGC	5 cut(s)	96, 162, 668, 884, 2034
AspS9I	GGNCC	4 cut(s)	228, 273, 857, 958
AsuC2I	CCSGG	3 cut(s)	98, 201, 223
AsuHPI	GGTGA	6 cut(s)	97, 430, 626, 1151, 1742, 2062
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	4 cut(s)	228, 273, 857, 958
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	2 cut(s)	5, 1598
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	2 cut(s)	35, 55
BarI	GAAGNNNNNNTAC	2 cut(s)	495, 527
BbsI	GAAGAC	3 cut(s)	252, 336, 762
Bbv12I	GWGCWC	2 cut(s)	35, 111
BbvI	GCAGC	7 cut(s)	29, 169, 509, 581, 1105, 1406, 1996
BccI	CCATC	7 cut(s)	206, 376, 467, 639, 782, 1792, 1958
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	1151, 1185
BciT130I	CCWGG	6 cut(s)	516, 612, 1115, 1541, 1600, 1652
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	3 cut(s)	98, 201, 223
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	5 cut(s)	923, 1077, 1421, 1568, 1662
BfmI	CTRYAG	4 cut(s)	15, 38, 155, 534
BfoI	RGCGCY	2 cut(s)	669, 885
BfuAI	ACCTGC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	898
BlpI	GCTNAGC	1 cut(s)	2028
Bme1390I	CCNGG	9 cut(s)	98, 201, 223, 516, 612, 1115, 1541, 1600, 1652
Bme18I	GGWCC	4 cut(s)	228, 273, 857, 958
BmeT110I	CYCGRG	1 cut(s)	673
BmgBI	CACGTC	3 cut(s)	629, 824, 893
BmgT120I	GGNCC	4 cut(s)	228, 273, 857, 958
BmiI	GGNNCC	4 cut(s)	235, 387, 531, 858
BmrFI	CCNGG	9 cut(s)	98, 201, 223, 516, 612, 1115, 1541, 1600, 1652
BmsI	GCATC	7 cut(s)	81, 997, 1201, 1288, 1513, 1695, 1738
BoxI	GACNNNNGTC	1 cut(s)	855
BpiI	GAAGAC	3 cut(s)	252, 336, 762
BpmI	CTGGAG	5 cut(s)	315, 1059, 1673, 1938, 1950
Bpu1102I	GCTNAGC	1 cut(s)	2028
BpuEI	CTTGAG	4 cut(s)	790, 802, 1301, 1793
BpuMI	CCSGG	3 cut(s)	98, 201, 223
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	6 cut(s)	778, 1113, 1593, 1599, 1650, 1995
BsaWI	WCCGGW	4 cut(s)	121, 230, 275, 484
BsaXI	ACNNNNNCTCC	4 cut(s)	270, 282, 300, 312
Bsc4I	CCNNNNNNNGG	9 cut(s)	128, 784, 1284, 1285, 1384, 1599, 1605, 1657, 1720
Bse118I	RCCGGY	1 cut(s)	1099
Bse1I	ACTGG	1 cut(s)	1141
Bse3DI	GCAATG	3 cut(s)	178, 711, 1821
BseAI	TCCGGA	3 cut(s)	121, 275, 484
BseBI	CCWGG	6 cut(s)	516, 612, 1115, 1541, 1600, 1652
BseDI	CCNNGG	6 cut(s)	778, 1113, 1593, 1599, 1650, 1995
BseGI	GGATG	6 cut(s)	96, 454, 774, 850, 1252, 2047
BseLI	CCNNNNNNNGG	9 cut(s)	128, 784, 1284, 1285, 1384, 1599, 1605, 1657, 1720
BseMI	GCAATG	3 cut(s)	178, 711, 1821
BseMII	CTCAG	5 cut(s)	696, 717, 987, 1344, 1779
BseNI	ACTGG	1 cut(s)	1141
BseRI	GAGGAG	4 cut(s)	148, 1178, 1460, 1670
BseSI	GKGCMC	1 cut(s)	206
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	7 cut(s)	29, 169, 509, 581, 1105, 1406, 1996
BseYI	CCCAGC	3 cut(s)	48, 140, 1671
BsgI	GTGCAG	3 cut(s)	456, 1002, 1413
Bsh1236I	CGCG	3 cut(s)	162, 335, 2034
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	3 cut(s)	5, 168, 1598
BshNI	GGYRCC	1 cut(s)	529
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	35, 111
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	8 cut(s)	97, 122, 200, 222, 231, 276, 485, 1100
BslI	CCNNNNNNNGG	9 cut(s)	128, 784, 1284, 1285, 1384, 1599, 1605, 1657, 1720
BsmAI	GTCTC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	1258
BsnI	GGCC	3 cut(s)	5, 168, 1598
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	4 cut(s)	35, 55, 111, 206
Bsp13I	TCCGGA	3 cut(s)	121, 275, 484
Bsp1407I	TGTACA	2 cut(s)	502, 623
Bsp143I	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
Bsp1720I	GCTNAGC	1 cut(s)	2028
Bsp19I	CCATGG	1 cut(s)	1593
BspACI	CCGC	9 cut(s)	162, 165, 169, 302, 335, 377, 446, 1330, 2039
BspANI	GGCC	3 cut(s)	5, 168, 1598
BspCNI	CTCAG	5 cut(s)	695, 718, 986, 1345, 1780
BspEI	TCCGGA	3 cut(s)	121, 275, 484
BspFNI	CGCG	3 cut(s)	162, 335, 2034
BspLI	GGNNCC	4 cut(s)	235, 387, 531, 858
BspMAI	CTGCAG	3 cut(s)	19, 159, 538
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	1 cut(s)	1278
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	3 cut(s)	178, 711, 1821
BsrFI	RCCGGY	1 cut(s)	1099
BsrGI	TGTACA	2 cut(s)	502, 623
BsrI	ACTGG	1 cut(s)	1141
BssAI	RCCGGY	1 cut(s)	1099
BssECI	CCNNGG	6 cut(s)	778, 1113, 1593, 1599, 1650, 1995
BssMI	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
BssT1I	CCWWGG	3 cut(s)	778, 1593, 1995
Bst2UI	CCWGG	6 cut(s)	516, 612, 1115, 1541, 1600, 1652
Bst4CI	ACNGT	3 cut(s)	72, 1083, 1777
Bst6I	CTCTTC	1 cut(s)	1713
BstAPI	GCANNNNNTGC	5 cut(s)	409, 443, 1016, 1025, 1220
BstAUI	TGTACA	2 cut(s)	502, 623
BstC8I	GCNNGC	6 cut(s)	35, 561, 732, 1170, 1174, 1753
BstDEI	CTNAG	7 cut(s)	682, 726, 973, 1353, 1514, 1788, 2028
BstDSI	CCRYGG	1 cut(s)	1593
BstEII	GGTNACC	1 cut(s)	325
BstENI	CCTNNNNNAGG	2 cut(s)	1382, 1655
BstF5I	GGATG	6 cut(s)	96, 454, 774, 850, 1252, 2047
BstFNI	CGCG	3 cut(s)	162, 335, 2034
BstH2I	RGCGCY	2 cut(s)	669, 885
BstHHI	GCGC	5 cut(s)	96, 162, 668, 884, 2034
BstKTI	GATC	6 cut(s)	547, 901, 1273, 1567, 1669, 1970
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
BstMCI	CGRYCG	1 cut(s)	169
BstNI	CCWGG	6 cut(s)	516, 612, 1115, 1541, 1600, 1652
BstNSI	RCATGY	1 cut(s)	1014
BstPAI	GACNNNNGTC	1 cut(s)	855
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	9 cut(s)	96, 199, 221, 514, 610, 1113, 1539, 1598, 1650
BstSFI	CTRYAG	4 cut(s)	15, 38, 155, 534
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	3 cut(s)	162, 335, 2034
BstV1I	GCAGC	7 cut(s)	29, 169, 509, 581, 1105, 1406, 1996
BstV2I	GAAGAC	3 cut(s)	252, 336, 762
BstX2I	RGATCY	2 cut(s)	898, 1270
BstYI	RGATCY	2 cut(s)	898, 1270
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	5, 168, 1598
BtgI	CCRYGG	1 cut(s)	1593
BtrI	CACGTC	3 cut(s)	629, 824, 893
BtsCI	GGATG	6 cut(s)	96, 454, 774, 850, 1252, 2047
BtsI	GCAGTG	2 cut(s)	204, 1827
BtsIMutI	CAGTG	2 cut(s)	204, 1827
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	6 cut(s)	35, 561, 732, 1170, 1174, 1753
CaiI	CAGNNNCTG	1 cut(s)	947
CciNI	GCGGCCGC	1 cut(s)	166
CfoI	GCGC	5 cut(s)	96, 162, 668, 884, 2034
Cfr10I	RCCGGY	1 cut(s)	1099
Cfr13I	GGNCC	4 cut(s)	228, 273, 857, 958
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	5 cut(s)	503, 530, 624, 865, 2002
CspCI	CAANNNNNGTGG	2 cut(s)	1803, 1838
CviAII	CATG	6 cut(s)	21, 1011, 1436, 1594, 1682, 2088
CviQI	GTAC	5 cut(s)	503, 530, 624, 865, 2002
DdeI	CTNAG	7 cut(s)	682, 726, 973, 1353, 1514, 1788, 2028
DpnI	GATC	6 cut(s)	546, 900, 1272, 1566, 1668, 1969
DpnII	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
DraIII	CACNNNGTG	1 cut(s)	632
DrdI	GACNNNNNNGTC	1 cut(s)	956
DseDI	GACNNNNNNGTC	1 cut(s)	956
EaeI	YGGCCR	3 cut(s)	3, 166, 1596
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	1713
EarI	CTCTTC	1 cut(s)	1713
Ecl136II	GAGCTC	1 cut(s)	33
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	3 cut(s)	778, 1593, 1995
Eco24I	GRGCYC	2 cut(s)	35, 55
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	1485
Eco47I	GGWCC	4 cut(s)	228, 273, 857, 958
Eco47III	AGCGCT	2 cut(s)	667, 883
Eco52I	CGGCCG	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	774, 1338, 1632
Eco88I	CYCGRG	1 cut(s)	673
Eco91I	GGTNACC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	2 cut(s)	1382, 1655
EcoO109I	RGGNCCY	1 cut(s)	958
EcoO65I	GGTNACC	1 cut(s)	325
EcoRII	CCWGG	6 cut(s)	514, 610, 1113, 1539, 1598, 1650
EcoRV	GATATC	1 cut(s)	1485
EcoT14I	CCWWGG	3 cut(s)	778, 1593, 1995
EcoT22I	ATGCAT	1 cut(s)	1012
EcoT38I	GRGCYC	2 cut(s)	35, 55
ErhI	CCWWGG	3 cut(s)	778, 1593, 1995
FaeI	CATG	6 cut(s)	24, 1014, 1439, 1597, 1685, 2091
FalI	AAGNNNNNCTT	2 cut(s)	1862, 1894
FatI	CATG	6 cut(s)	20, 1010, 1435, 1593, 1681, 2087
FauI	CCCGC	2 cut(s)	295, 1323
FbaI	TGATCA	1 cut(s)	544
FokI	GGATG	6 cut(s)	103, 461, 761, 857, 1259, 2054
FriOI	GRGCYC	2 cut(s)	35, 55
FspBI	CTAG	5 cut(s)	923, 1077, 1421, 1568, 1662
GlaI	GCGC	5 cut(s)	95, 161, 667, 883, 2033
GsaI	CCCAGC	3 cut(s)	52, 144, 1675
GsuI	CTGGAG	5 cut(s)	315, 1059, 1673, 1938, 1950
HaeII	RGCGCY	2 cut(s)	669, 885
HaeIII	GGCC	3 cut(s)	5, 168, 1598
HapII	CCGG	8 cut(s)	97, 122, 200, 222, 231, 276, 485, 1100
HhaI	GCGC	5 cut(s)	96, 162, 668, 884, 2034
Hin1II	CATG	6 cut(s)	24, 1014, 1439, 1597, 1685, 2091
Hin6I	GCGC	5 cut(s)	94, 160, 666, 882, 2032
HinP1I	GCGC	5 cut(s)	94, 160, 666, 882, 2032
HincII	GTYRAC	3 cut(s)	393, 1702, 1963
HindII	GTYRAC	3 cut(s)	393, 1702, 1963
HinfI	GANTC	6 cut(s)	191, 310, 791, 833, 978, 1403
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	8 cut(s)	97, 122, 200, 222, 231, 276, 485, 1100
HphI	GGTGA	6 cut(s)	97, 430, 626, 1151, 1742, 2062
Hpy166II	GTNNAC	6 cut(s)	68, 393, 624, 626, 1702, 1963
Hpy188I	TCNGA	3 cut(s)	30, 238, 1408
Hpy8I	GTNNAC	6 cut(s)	68, 393, 624, 626, 1702, 1963
Hpy99I	CGWCG	2 cut(s)	76, 633
HpyAV	CCTTC	9 cut(s)	340, 580, 780, 949, 1261, 1378, 1763, 2015, 2048
HpyCH4III	ACNGT	3 cut(s)	72, 1083, 1777
HpyCH4IV	ACGT	5 cut(s)	628, 744, 823, 892, 1390
HpyF3I	CTNAG	7 cut(s)	682, 726, 973, 1353, 1514, 1788, 2028
HpySE526I	ACGT	5 cut(s)	628, 744, 823, 892, 1390
Hsp92II	CATG	6 cut(s)	24, 1014, 1439, 1597, 1685, 2091
HspAI	GCGC	5 cut(s)	94, 160, 666, 882, 2032
Kpn2I	TCCGGA	3 cut(s)	121, 275, 484
KpnI	GGTACC	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	544
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
LmnI	GCTCC	5 cut(s)	124, 290, 385, 1165, 1447
Lsp1109I	GCAGC	7 cut(s)	29, 169, 509, 581, 1105, 1406, 1996
LweI	GCATC	7 cut(s)	81, 997, 1201, 1288, 1513, 1695, 1738
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	5 cut(s)	923, 1077, 1421, 1568, 1662
MaeII	ACGT	5 cut(s)	628, 744, 823, 892, 1390
MaeIII	GTNAC	6 cut(s)	10, 325, 745, 1070, 1102, 1469
MalI	GATC	6 cut(s)	546, 900, 1272, 1566, 1668, 1969
MboI	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	2 cut(s)	898, 1270
MhlI	GDGCHC	4 cut(s)	35, 55, 111, 206
MlsI	TGGCCA	2 cut(s)	5, 1598
MluCI	AATT	7 cut(s)	58, 78, 1293, 1334, 1451, 1792, 1851
MluNI	TGGCCA	2 cut(s)	5, 1598
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	822
Mox20I	TGGCCA	2 cut(s)	5, 1598
Mph1103I	ATGCAT	1 cut(s)	1012
MroI	TCCGGA	3 cut(s)	121, 275, 484
MscI	TGGCCA	2 cut(s)	5, 1598
MseI	TTAA	2 cut(s)	392, 1938
MslI	CAYNNNNRTG	1 cut(s)	1005
Msp20I	TGGCCA	2 cut(s)	5, 1598
MspA1I	CMGCKG	2 cut(s)	500, 1397
MspI	CCGG	8 cut(s)	97, 122, 200, 222, 231, 276, 485, 1100
MspR9I	CCNGG	9 cut(s)	98, 201, 223, 516, 612, 1115, 1541, 1600, 1652
MunI	CAATTG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	1258
MvaI	CCWGG	6 cut(s)	516, 612, 1115, 1541, 1600, 1652
MvnI	CGCG	3 cut(s)	162, 335, 2034
NciI	CCSGG	3 cut(s)	98, 201, 223
NcoI	CCATGG	1 cut(s)	1593
NdeII	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
NlaIII	CATG	6 cut(s)	24, 1014, 1439, 1597, 1685, 2091
NlaIV	GGNNCC	4 cut(s)	235, 387, 531, 858
NmuCI	GTSAC	1 cut(s)	10
NotI	GCGGCCGC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	1012
NspI	RCATGY	1 cut(s)	1014
PaeR7I	CTCGAG	1 cut(s)	673
PctI	GAATGC	1 cut(s)	1258
PfeI	GAWTC	5 cut(s)	310, 791, 833, 978, 1403
PflMI	CCANNNNNTGG	2 cut(s)	784, 1605
PfoI	TCCNGGA	1 cut(s)	514
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	958
PshAI	GACNNNNGTC	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	6 cut(s)	514, 610, 1113, 1539, 1598, 1650
PspEI	GGTNACC	1 cut(s)	325
PspFI	CCCAGC	3 cut(s)	48, 140, 1671
PspGI	CCWGG	6 cut(s)	514, 610, 1113, 1539, 1598, 1650
PspN4I	GGNNCC	4 cut(s)	235, 387, 531, 858
PspPI	GGNCC	4 cut(s)	228, 273, 857, 958
PspPPI	RGGWCCY	1 cut(s)	958
PstI	CTGCAG	3 cut(s)	19, 159, 538
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	898, 1270
PvuII	CAGCTG	2 cut(s)	500, 1397
RsaI	GTAC	5 cut(s)	504, 531, 625, 866, 2003
RsaNI	GTAC	5 cut(s)	503, 530, 624, 865, 2002
RseI	CAYNNNNRTG	1 cut(s)	1005
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	392, 1938
Sau3AI	GATC	6 cut(s)	544, 898, 1270, 1564, 1666, 1967
Sau96I	GGNCC	4 cut(s)	228, 273, 857, 958
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	9 cut(s)	98, 201, 223, 516, 612, 1115, 1541, 1600, 1652
SduI	GDGCHC	4 cut(s)	35, 55, 111, 206
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	7 cut(s)	81, 997, 1201, 1288, 1513, 1695, 1738
SfcI	CTRYAG	4 cut(s)	15, 38, 155, 534
Sfr274I	CTCGAG	1 cut(s)	673
SinI	GGWCC	4 cut(s)	228, 273, 857, 958
SlaI	CTCGAG	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	1005
SmlI	CTYRAG	5 cut(s)	673, 805, 817, 1280, 1808
SmoI	CTYRAG	5 cut(s)	673, 805, 817, 1280, 1808
Sse9I	AATT	7 cut(s)	58, 78, 1293, 1334, 1451, 1792, 1851
SsiI	CCGC	9 cut(s)	162, 165, 169, 302, 335, 377, 446, 1330, 2039
SspI	AATATT	2 cut(s)	721, 1372
SspMI	CTAG	5 cut(s)	923, 1077, 1421, 1568, 1662
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	9 cut(s)	96, 199, 221, 514, 610, 1113, 1539, 1598, 1650
StyI	CCWWGG	3 cut(s)	778, 1593, 1995
TaaI	ACNGT	3 cut(s)	72, 1083, 1777
TaiI	ACGT	5 cut(s)	631, 747, 826, 895, 1393
TaqI	TCGA	4 cut(s)	103, 189, 643, 674
TasI	AATT	7 cut(s)	58, 78, 1293, 1334, 1451, 1792, 1851
TatI	WGTACW	4 cut(s)	502, 623, 864, 2001
TauI	GCSGC	4 cut(s)	165, 168, 171, 338
TfiI	GAWTC	5 cut(s)	310, 791, 833, 978, 1403
Tru1I	TTAA	2 cut(s)	392, 1938
Tru9I	TTAA	2 cut(s)	392, 1938
TscAI	CASTG	2 cut(s)	211, 1827
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	7 cut(s)	17, 157, 497, 569, 1118, 1394, 1984
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	258, 970, 1397, 1548
TspGWI	ACGGA	2 cut(s)	1594, 1703
TspRI	CASTG	2 cut(s)	211, 1827
Van91I	CCANNNNNTGG	2 cut(s)	784, 1605
VpaK11BI	GGWCC	4 cut(s)	228, 273, 857, 958
XagI	CCTNNNNNAGG	2 cut(s)	1382, 1655
XapI	RAATTY	1 cut(s)	1792
XbaI	TCTAGA	1 cut(s)	1567
XceI	RCATGY	1 cut(s)	1014
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XhoI	CTCGAG	1 cut(s)	673
XspI	CTAG	5 cut(s)	923, 1077, 1421, 1568, 1662
Zsp2I	ATGCAT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.