Rroxscaffold_4G00281100

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
3462560 .. 3467158
4599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281100.1

Sequence Viewer

Length: 2934 bp
ATGGCCAATGTGACTGCAGCATGGTCTCCGAGCTCGCTACAGCTTCGGTGGGCTCTGAATTCCGGCAATTGCAGTAAACCGTCGCCAATTCTGGTGAGGATGCGCCGGGTTCGAGTGCTCTGTGTTGCTCCGGACACAGGGAGGAGTGCTGGGAATAATGGATTGCAGCGCGGCCGCAATGGGAGTTCGTGGGTCGAGTCCAAGCCGGGCACTGCTGATGGCTTGTCCGGGTGGTCCGGTTCCGATGATGAAGACGACTCGCAGAAGAAGAAGAAGAAATGGTCCGGAGGGCTTGTGGGAGCTGGAGTAGCCGGAGTGATTCTTGTGGCAGGGGTTACCTTCGCGGCATTGTCTTCAGGAAAAAAAGCGAATACAAGACCGAAACCACAGATGGAGCCCTTAACAACAGAGCAGGAGGTGTTATTGGTGAATGATGATGTCAATGCAGAGGGTGTGGATGAGCAAAGCAACACGAAGCAAGATGGTGGTAGTCCGGAAGAAAAGGCAGGTACTAACAAGGATTATTCTTCATCTCGAGAAATTGATGTGTCTCCCGGTTTATATACAGTTGGTAATGATTATAATCTAGGGGAGTTGTCAGTCGAAGAGTTTGAGTATGCATCCGGTGGTGGTTCTGAGGCCATCAACAGCGCTTCCATTCAAGAAGATTTGCAACATGAATCAACTTCTGATGACAAGTCAGTCGAGCCTGAAACGTTAACAAGGCAGTTTGATCTGCCTGAATCTGATCATGGCAATGATTCTTTTCTTGCCTCTGGGCTTGAGGATTCTGATACTAGCCTTGCTGTAGGTACAGGAGATTTGACTTCTGAACTTAAAGAGAACCCGGTTAGTGTCGAACCAATCAAGTTGCCAGTCTCTGACGCTATCAATTCAAACCTTAGCATTGAACCCCAGGATGAAATTCCTGGGGCAAGTGAAAATCAAACTGCCACTTCTGAGTCTTCTACTGTTAATGCACATGAACACAATGAATCTATAGCTGTGGATGTTTCAGTTTCTTCGGAATCAAACATTCTTTTAGAACCTCAAGTATTGTCTAAAGATAACCTAGGAGTTGTAGCCTCGTCTTCAACCAAAGAAAACCTTGACCCAAGTGAAACAGTACAGGTCTTGGCTGAGGGAAATAGTTCCTCCCTGGAAGTGCATACCATAACTGAAAGCGGGTCATCTGCAACATCTGTGTCAGAACAGGCCTATCAAAATGCAAATGAACAATACACATATTATTCTAATGATACAAATACAAGCAAATCACAATTACCAACTCCTCGGAATTCCTTCTCTTCTGCTGGTATACCTGCTCCAACTGTGGTTTCTGCAGCTGTACAGGTGCTTCCTGGAAAGGTTTTGGTACCTGCAGTTGTTGATCAGGTTCAGGGGCAGGCATTAGCAGCTCTACAAGTGTTGAAGGTCGTAGAGGCTGATGTTCAACCTGGTGATTTGTGTACACGTCGTGAATATGCTCGATGGTTGGTATCTGCAAGTAGTGCTCTTTCGAGGAACTCAGTATCTAAAGTATATCCTGCAATGTATATTGAGAATATTACTGAGCTTGCATTTGATGACGTTACACCTGAAGACCCTGATTTCCCTTCCATCCAAGGTTTGGCTGAATCTGGACTTATCTCAAGTAAGCTCTCAAGACGTGATATGGATTCTTCGTTGGATGAGGACGATCCGTTGTACTTCTCTCCTGAAAGCCCTCTATCACGTCAAGATCTTGTAAGCTGGAAGATGGCCCTAGAGAAAAGACATCTTCCAGAAGCTGACAGGAAGGTCCTCCACCAAATCTCAGGATTCATTGATACTGATAAGATACACCCAGATGCATGTCCTGCACTTGTTGCTGACCTATCTGGAGAACAGGGTATTATTGCTCTTGCATTTGGTTACACTAGACTTTTTCAGCCAAATAAGCCGGTAACAAAAGCCCAGGCTGCTATTGCTCTTGCAACTGGTGAGTATGCTGATGTAGTTAGCGAGGAGCTTACACGCATTGAAGCAGAAGCTATGGCAGAAAAGGCTGTTGATGCACATAATGCTTTAGTAGCCCAAGTTGAAAAGGATGTGAATGCAAGTTTTGAGAAGGATCTTTCCCTTGAGAGGGAAAAAATTGAGGCTGTGGAGAGAATGGCTGAAGAAGCAAAGCGGGAATTGGAAAGGTTGAGGGCTGAGAGAGAGGCAGATAATATTGCCCTGATGAAGGAACGTGCAGCTGTTGAATCAGAAATGGAAGTTCTAGCAAGGTTGAGGCATGAGGTGGAGCAGCAATTAGAGAACCTAATGAGTAACAAAGTAGAGATATCATTTGAAAAGGAAAGAGTTAGCAAACTTAGGAAAGATGCAGAAAATGAAAGCCAGGAGATTGCTCGTTTGCAGTATGACCTAGAGGTTGAACGGAAAGCCTTGTCCATGGCCAGGGCTTGGGCTGAAGATGAGGCAAAAAGAGCAAGAGAACAAGCTAAATCGCTGGAGGAGGCTAGAGATCGCTGGGAGAGGCATGGCATCAAAGTAGTTGTTGACAATGACCTCCGTGAAGAGGCATTGGGTGAAGCTACTTGGGTTGATGCTGGCAAGTTGTCAGTTGAAGGAACTGTTAGCAGGGCCGAGAATTTGATGGACAAACTCAAGGCAATGGCAGTGGATATAAAAGGAAGAAGCAGAGATGTAATTGATAAAATCATTCAAAAGATAGCCTTGTTTGTATCAAGTTTGAGGGAATGGGTTTCCAAAGCTGGAGAAAGGGCTGGAGAACTTAAAGACGCAGCCATCTCAAAGGCCAACAGATCAGCACAAGAGTTGCAGCAAAGCACCTTGGAGTACAGCTTGGTAGTCAAAGAAGGTGCTAGGCGCGTAGCGGATGATTGTAGGGAAGGAGTGGAGAAACTCACCCAAAGGTTCAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

977

Amino Acids

106.26

Weight (kDa)

4.7

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AasI GACNNNNNNGTC 2 cut(s) 701, 1799
Acc36I ACCTGC 3 cut(s) 497, 1330, 1387
Acc65I GGTACC 1 cut(s) 1375
AccB1I GGYRCC 1 cut(s) 1375
AccB7I CCANNNNNTGG 2 cut(s) 1630, 2448
AccI GTMKAC 1 cut(s) 1318
AccII CGCG 3 cut(s) 171, 344, 2877
AccIII TCCGGA 3 cut(s) 130, 284, 493
AciI CCGC 6 cut(s) 171, 175, 344, 1185, 2173, 2882
AclI AACGTT 1 cut(s) 716
AclWI GGATC 2 cut(s) 1694, 2121
AcoI YGGCCR 3 cut(s) 3, 172, 2439
AcsI RAATTY 4 cut(s) 58, 924, 1297, 2635
AcuI CTGAAG 4 cut(s) 339, 1620, 2181, 2475
AdeI CACNNNGTG 1 cut(s) 1478
AfaI GTAC 8 cut(s) 511, 814, 1128, 1350, 1377, 1471, 1709, 2846
AfeI AGCGCT 1 cut(s) 652
AfiI CCNNNNNNNGG 8 cut(s) 137, 1630, 2127, 2128, 2227, 2442, 2448, 2563
AflIII ACRYGT 1 cut(s) 1472
AjiI CACGTC 3 cut(s) 1475, 1670, 1736
AjnI CCWGG 8 cut(s) 915, 928, 1158, 1360, 1456, 1956, 2382, 2441
AjuI GAANNNNNNNTTGG 2 cut(s) 1321, 1353
Alw21I GWGCWC 3 cut(s) 35, 120, 1516
Alw26I GTCTC 3 cut(s) 30, 555, 883
AlwI GGATC 2 cut(s) 1694, 2121
AlwNI CAGNNNCTG 2 cut(s) 881, 1790
Ama87I CYCGRG 1 cut(s) 534
Aor13HI TCCGGA 3 cut(s) 130, 284, 493
Aor51HI AGCGCT 1 cut(s) 652
AoxI GGCC 8 cut(s) 3, 172, 639, 1215, 1761, 2439, 2628, 2802
ApeKI GCWGC 9 cut(s) 17, 166, 1343, 1415, 1961, 2237, 2290, 2789, 2827
ApoI RAATTY 4 cut(s) 58, 924, 1297, 2635
Asp700I GAANNNNTTC 2 cut(s) 1150, 1301
Asp718I GGTACC 1 cut(s) 1375
AspA2I CCTAGG 1 cut(s) 1072
AspLEI GCGC 4 cut(s) 105, 171, 653, 2877
AspS9I GGNCC 5 cut(s) 234, 282, 1762, 1801, 2628
AsuC2I CCSGG 5 cut(s) 107, 207, 229, 555, 848
AsuHPI GGTGA 6 cut(s) 106, 439, 1472, 1994, 2585, 2905
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 3 cut(s) 234, 282, 1801
AvrII CCTAGG 1 cut(s) 1072
BaeGI GKGCMC 1 cut(s) 212
BalI TGGCCA 2 cut(s) 5, 2441
BanI GGYRCC 1 cut(s) 1375
BanII GRGCYC 3 cut(s) 35, 55, 399
BarI GAAGNNNNNNTAC 2 cut(s) 1341, 1373
BbsI GAAGAC 5 cut(s) 258, 345, 957, 1083, 1608
Bbv12I GWGCWC 3 cut(s) 35, 120, 1516
BbvCI CCTCAGC 1 cut(s) 1140
BbvI GCAGC 9 cut(s) 29, 178, 1355, 1427, 1948, 2249, 2302, 2801, 2839
BccI CCATC 9 cut(s) 212, 385, 476, 650, 1485, 1628, 1753, 2635, 2801
BciT130I CCWGG 8 cut(s) 917, 930, 1160, 1362, 1458, 1958, 2384, 2443
BclI TGATCA 2 cut(s) 748, 1390
BcnI CCSGG 5 cut(s) 107, 207, 229, 555, 848
BcoDI GTCTC 3 cut(s) 30, 555, 883
BfaI CTAG 9 cut(s) 587, 798, 1073, 1766, 1920, 2264, 2411, 2505, 2871
BfmI CTRYAG 6 cut(s) 15, 38, 807, 999, 1341, 1380
BfoI RGCGCY 1 cut(s) 654
BfuAI ACCTGC 3 cut(s) 497, 1330, 1387
BglII AGATCT 1 cut(s) 1741
BlnI CCTAGG 1 cut(s) 1072
Bme18I GGWCC 3 cut(s) 234, 282, 1801
BmeT110I CYCGRG 1 cut(s) 534
BmgBI CACGTC 3 cut(s) 1475, 1670, 1736
BmgT120I GGNCC 5 cut(s) 234, 282, 1762, 1801, 2628
BmiI GGNNCC 3 cut(s) 241, 396, 1377
BmsI GCATC 7 cut(s) 90, 629, 1840, 2044, 2356, 2538, 2581
BpiI GAAGAC 5 cut(s) 258, 345, 957, 1083, 1608
BpmI CTGGAG 5 cut(s) 324, 1902, 2516, 2781, 2793
Bpu10I CCTNAGC 2 cut(s) 902, 1140
BpuEI CTTGAG 6 cut(s) 803, 1035, 1636, 1648, 2144, 2636
BpuMI CCSGG 5 cut(s) 107, 207, 229, 555, 848
BsaBI GATNNNNATC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 30
BsaWI WCCGGW 5 cut(s) 130, 236, 284, 493, 623
BsaXI ACNNNNNCTCC 4 cut(s) 279, 291, 309, 321
Bsc4I CCNNNNNNNGG 8 cut(s) 137, 1630, 2127, 2128, 2227, 2442, 2448, 2563
Bse118I RCCGGY 1 cut(s) 1942
Bse1I ACTGG 2 cut(s) 875, 1984
Bse3DI GCAATG 4 cut(s) 184, 763, 1557, 2664
Bse8I GATNNNNATC 1 cut(s) 582
BseAI TCCGGA 3 cut(s) 130, 284, 493
BseBI CCWGG 8 cut(s) 917, 930, 1160, 1362, 1458, 1958, 2384, 2443
BseGI GGATG 9 cut(s) 105, 463, 620, 925, 1015, 1620, 1696, 2095, 2890
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 8 cut(s) 137, 1630, 2127, 2128, 2227, 2442, 2448, 2563
BseMI GCAATG 4 cut(s) 184, 763, 1557, 2664
BseMII CTCAG 7 cut(s) 627, 951, 1131, 1542, 1563, 1830, 2187
BseNI ACTGG 2 cut(s) 875, 1984
BseRI GAGGAG 4 cut(s) 157, 1281, 2021, 2513
BseSI GKGCMC 1 cut(s) 212
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 9 cut(s) 29, 178, 1355, 1427, 1948, 2249, 2302, 2801, 2839
BseYI CCCAGC 2 cut(s) 149, 2514
BsgI GTGCAG 2 cut(s) 1845, 2256
Bsh1236I CGCG 3 cut(s) 171, 344, 2877
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 8 cut(s) 5, 174, 641, 1217, 1763, 2441, 2630, 2804
BshNI GGYRCC 1 cut(s) 1375
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 3 cut(s) 35, 120, 1516
BsiHKCI CYCGRG 1 cut(s) 534
BslI CCNNNNNNNGG 8 cut(s) 137, 1630, 2127, 2128, 2227, 2442, 2448, 2563
BsmAI GTCTC 3 cut(s) 30, 555, 883
BsmI GAATGC 1 cut(s) 2101
BsnI GGCC 8 cut(s) 5, 174, 641, 1217, 1763, 2441, 2630, 2804
Bso31I GGTCTC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 6 cut(s) 35, 55, 120, 212, 399, 1516
Bsp13I TCCGGA 3 cut(s) 130, 284, 493
Bsp1407I TGTACA 2 cut(s) 1348, 1469
Bsp143I GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
Bsp19I CCATGG 1 cut(s) 2436
BspACI CCGC 6 cut(s) 171, 175, 344, 1185, 2173, 2882
BspANI GGCC 8 cut(s) 5, 174, 641, 1217, 1763, 2441, 2630, 2804
BspCNI CTCAG 7 cut(s) 628, 952, 1132, 1541, 1564, 1829, 2188
BspEI TCCGGA 3 cut(s) 130, 284, 493
BspFNI CGCG 3 cut(s) 171, 344, 2877
BspLI GGNNCC 3 cut(s) 241, 396, 1377
BspMAI CTGCAG 3 cut(s) 19, 1345, 1384
BspMI ACCTGC 3 cut(s) 497, 1330, 1387
BspPI GGATC 2 cut(s) 1694, 2121
BspT107I GGYRCC 1 cut(s) 1375
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 4 cut(s) 184, 763, 1557, 2664
BsrFI RCCGGY 1 cut(s) 1942
BsrGI TGTACA 2 cut(s) 1348, 1469
BsrI ACTGG 2 cut(s) 875, 1984
BssAI RCCGGY 1 cut(s) 1942
BssMI GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
BssNAI GTATAC 1 cut(s) 1319
BssT1I CCWWGG 4 cut(s) 1072, 1624, 2436, 2838
Bst1107I GTATAC 1 cut(s) 1319
Bst2UI CCWGG 8 cut(s) 917, 930, 1160, 1362, 1458, 1958, 2384, 2443
Bst4CI ACNGT 6 cut(s) 81, 568, 973, 1126, 1333, 2620
Bst6I CTCTTC 3 cut(s) 600, 1312, 2556
BstAPI GCANNNNNTGC 4 cut(s) 1511, 1859, 1868, 2063
BstAUI TGTACA 2 cut(s) 1348, 1469
BstC8I GCNNGC 4 cut(s) 35, 1407, 1578, 2596
BstDEI CTNAG 9 cut(s) 636, 902, 960, 1140, 1528, 1572, 1816, 2196, 2357
BstDSI CCRYGG 1 cut(s) 2436
BstEII GGTNACC 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 2225
BstF5I GGATG 9 cut(s) 105, 463, 620, 925, 1015, 1620, 1696, 2095, 2890
BstFNI CGCG 3 cut(s) 171, 344, 2877
BstH2I RGCGCY 1 cut(s) 654
BstHHI GCGC 4 cut(s) 105, 171, 653, 2877
BstKTI GATC 8 cut(s) 736, 751, 1393, 1702, 1744, 2116, 2512, 2813
BstMAI GTCTC 3 cut(s) 30, 555, 883
BstMBI GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
BstMCI CGRYCG 1 cut(s) 175
BstNI CCWGG 8 cut(s) 917, 930, 1160, 1362, 1458, 1958, 2384, 2443
BstNSI RCATGY 1 cut(s) 1857
BstPI GGTNACC 1 cut(s) 334
BstSFI CTRYAG 6 cut(s) 15, 38, 807, 999, 1341, 1380
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 3 cut(s) 171, 344, 2877
BstV1I GCAGC 9 cut(s) 29, 178, 1355, 1427, 1948, 2249, 2302, 2801, 2839
BstV2I GAAGAC 5 cut(s) 258, 345, 957, 1083, 1608
BstX2I RGATCY 2 cut(s) 1741, 2113
BstYI RGATCY 2 cut(s) 1741, 2113
BstZ17I GTATAC 1 cut(s) 1319
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 8 cut(s) 5, 174, 641, 1217, 1763, 2441, 2630, 2804
BtgI CCRYGG 1 cut(s) 2436
BtrI CACGTC 3 cut(s) 1475, 1670, 1736
BtsCI GGATG 9 cut(s) 105, 463, 620, 925, 1015, 1620, 1696, 2095, 2890
BtsI GCAGTG 2 cut(s) 210, 2670
BtsIMutI CAGTG 2 cut(s) 210, 2670
BveI ACCTGC 3 cut(s) 497, 1330, 1387
Cac8I GCNNGC 4 cut(s) 35, 1407, 1578, 2596
CaiI CAGNNNCTG 2 cut(s) 881, 1790
CciNI GCGGCCGC 1 cut(s) 172
CfoI GCGC 4 cut(s) 105, 171, 653, 2877
Cfr10I RCCGGY 1 cut(s) 1942
Cfr13I GGNCC 5 cut(s) 234, 282, 1762, 1801, 2628
CseI GACGC 2 cut(s) 893, 2795
CsiI ACCWGGT 1 cut(s) 1456
Csp6I GTAC 8 cut(s) 510, 813, 1127, 1349, 1376, 1470, 1708, 2845
CspCI CAANNNNNGTGG 2 cut(s) 2646, 2681
CviAII CATG 9 cut(s) 21, 677, 752, 983, 1854, 2279, 2437, 2525, 2931
CviQI GTAC 8 cut(s) 510, 813, 1127, 1349, 1376, 1470, 1708, 2845
DdeI CTNAG 9 cut(s) 636, 902, 960, 1140, 1528, 1572, 1816, 2196, 2357
DpnI GATC 8 cut(s) 735, 750, 1392, 1701, 1743, 2115, 2511, 2812
DpnII GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
DraIII CACNNNGTG 1 cut(s) 1478
DrdI GACNNNNNNGTC 2 cut(s) 701, 1799
DseDI GACNNNNNNGTC 2 cut(s) 701, 1799
EaeI YGGCCR 3 cut(s) 3, 172, 2439
EagI CGGCCG 1 cut(s) 172
Eam1104I CTCTTC 3 cut(s) 600, 1312, 2556
EarI CTCTTC 3 cut(s) 600, 1312, 2556
Ecl136II GAGCTC 1 cut(s) 33
EclXI CGGCCG 1 cut(s) 172
Eco130I CCWWGG 4 cut(s) 1072, 1624, 2436, 2838
Eco147I AGGCCT 1 cut(s) 1217
Eco24I GRGCYC 3 cut(s) 35, 55, 399
Eco31I GGTCTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 2328
Eco47I GGWCC 3 cut(s) 234, 282, 1801
Eco47III AGCGCT 1 cut(s) 652
Eco52I CGGCCG 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 33
Eco57I CTGAAG 4 cut(s) 339, 1620, 2181, 2475
Eco88I CYCGRG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 2225
EcoO109I RGGNCCY 1 cut(s) 1801
EcoO65I GGTNACC 1 cut(s) 334
EcoRI GAATTC 2 cut(s) 58, 1297
EcoRII CCWGG 8 cut(s) 915, 928, 1158, 1360, 1456, 1956, 2382, 2441
EcoRV GATATC 1 cut(s) 2328
EcoT14I CCWWGG 4 cut(s) 1072, 1624, 2436, 2838
EcoT22I ATGCAT 2 cut(s) 622, 1855
EcoT38I GRGCYC 3 cut(s) 35, 55, 399
ErhI CCWWGG 4 cut(s) 1072, 1624, 2436, 2838
FaeI CATG 9 cut(s) 24, 680, 755, 986, 1857, 2282, 2440, 2528, 2934
FalI AAGNNNNNCTT 4 cut(s) 1092, 1124, 2705, 2737
FatI CATG 9 cut(s) 20, 676, 751, 982, 1853, 2278, 2436, 2524, 2930
FauI CCCGC 2 cut(s) 1178, 2166
FbaI TGATCA 2 cut(s) 748, 1390
FblI GTMKAC 1 cut(s) 1318
FokI GGATG 9 cut(s) 112, 470, 607, 932, 1022, 1607, 1703, 2102, 2897
FriOI GRGCYC 3 cut(s) 35, 55, 399
FspBI CTAG 9 cut(s) 587, 798, 1073, 1766, 1920, 2264, 2411, 2505, 2871
GlaI GCGC 4 cut(s) 104, 170, 652, 2876
GsaI CCCAGC 2 cut(s) 153, 2518
GsuI CTGGAG 5 cut(s) 324, 1902, 2516, 2781, 2793
HaeII RGCGCY 1 cut(s) 654
HaeIII GGCC 8 cut(s) 5, 174, 641, 1217, 1763, 2441, 2630, 2804
HgaI GACGC 2 cut(s) 893, 2795
HhaI GCGC 4 cut(s) 105, 171, 653, 2877
Hin1II CATG 9 cut(s) 24, 680, 755, 986, 1857, 2282, 2440, 2528, 2934
Hin6I GCGC 4 cut(s) 103, 169, 651, 2875
HinP1I GCGC 4 cut(s) 103, 169, 651, 2875
HincII GTYRAC 2 cut(s) 720, 2545
HindII GTYRAC 2 cut(s) 720, 2545
HpaI GTTAAC 1 cut(s) 720
HphI GGTGA 6 cut(s) 106, 439, 1472, 1994, 2585, 2905
Hpy166II GTNNAC 6 cut(s) 77, 720, 1319, 1470, 1472, 2545
Hpy8I GTNNAC 6 cut(s) 77, 720, 1319, 1470, 1472, 2545
Hpy99I CGWCG 2 cut(s) 85, 1479
HpyCH4III ACNGT 6 cut(s) 81, 568, 973, 1126, 1333, 2620
HpyCH4IV ACGT 6 cut(s) 716, 1474, 1590, 1669, 1735, 2233
HpyF3I CTNAG 9 cut(s) 636, 902, 960, 1140, 1528, 1572, 1816, 2196, 2357
HpySE526I ACGT 6 cut(s) 716, 1474, 1590, 1669, 1735, 2233
Hsp92II CATG 9 cut(s) 24, 680, 755, 986, 1857, 2282, 2440, 2528, 2934
HspAI GCGC 4 cut(s) 103, 169, 651, 2875
Kpn2I TCCGGA 3 cut(s) 130, 284, 493
KpnI GGTACC 1 cut(s) 1379
Ksp22I TGATCA 2 cut(s) 748, 1390
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
LmnI GCTCC 6 cut(s) 133, 299, 394, 1330, 2008, 2287
Lsp1109I GCAGC 9 cut(s) 29, 178, 1355, 1427, 1948, 2249, 2302, 2801, 2839
LweI GCATC 7 cut(s) 90, 629, 1840, 2044, 2356, 2538, 2581
MabI ACCWGGT 1 cut(s) 1456
MaeI CTAG 9 cut(s) 587, 798, 1073, 1766, 1920, 2264, 2411, 2505, 2871
MaeII ACGT 6 cut(s) 716, 1474, 1590, 1669, 1735, 2233
MaeIII GTNAC 6 cut(s) 10, 334, 1591, 1913, 1945, 2312
MalI GATC 8 cut(s) 735, 750, 1392, 1701, 1743, 2115, 2511, 2812
MboI GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
MfeI CAATTG 1 cut(s) 67
MflI RGATCY 2 cut(s) 1741, 2113
MhlI GDGCHC 6 cut(s) 35, 55, 120, 212, 399, 1516
MlsI TGGCCA 2 cut(s) 5, 2441
MluNI TGGCCA 2 cut(s) 5, 2441
MlyI GAGTC 3 cut(s) 206, 251, 971
MmeI TCCRAC 2 cut(s) 1352, 1668
Mox20I TGGCCA 2 cut(s) 5, 2441
Mph1103I ATGCAT 2 cut(s) 622, 1855
MroI TCCGGA 3 cut(s) 130, 284, 493
MroXI GAANNNNTTC 2 cut(s) 1150, 1301
MscI TGGCCA 2 cut(s) 5, 2441
MseI TTAA 5 cut(s) 401, 719, 837, 975, 2781
MslI CAYNNNNRTG 2 cut(s) 756, 1848
Msp20I TGGCCA 2 cut(s) 5, 2441
MspA1I CMGCKG 2 cut(s) 1346, 2240
MunI CAATTG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 2101
MvaI CCWGG 8 cut(s) 917, 930, 1160, 1362, 1458, 1958, 2384, 2443
MvnI CGCG 3 cut(s) 171, 344, 2877
NciI CCSGG 5 cut(s) 107, 207, 229, 555, 848
NcoI CCATGG 1 cut(s) 2436
NdeII GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
NlaIII CATG 9 cut(s) 24, 680, 755, 986, 1857, 2282, 2440, 2528, 2934
NlaIV GGNNCC 3 cut(s) 241, 396, 1377
NmeAIII GCCGAG 1 cut(s) 2656
NmuCI GTSAC 1 cut(s) 10
NotI GCGGCCGC 1 cut(s) 172
NsiI ATGCAT 2 cut(s) 622, 1855
NspI RCATGY 1 cut(s) 1857
PaeR7I CTCGAG 1 cut(s) 534
PceI AGGCCT 1 cut(s) 1217
PctI GAATGC 1 cut(s) 2101
PdmI GAANNNNTTC 2 cut(s) 1150, 1301
PflMI CCANNNNNTGG 2 cut(s) 1630, 2448
PfoI TCCNGGA 1 cut(s) 1360
PleI GAGTC 3 cut(s) 205, 251, 970
PpsI GAGTC 3 cut(s) 205, 251, 970
PpuMI RGGWCCY 1 cut(s) 1801
PsiI TTATAA 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 716
Psp5II RGGWCCY 1 cut(s) 1801
Psp6I CCWGG 8 cut(s) 915, 928, 1158, 1360, 1456, 1956, 2382, 2441
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 2 cut(s) 149, 2514
PspGI CCWGG 8 cut(s) 915, 928, 1158, 1360, 1456, 1956, 2382, 2441
PspN4I GGNNCC 3 cut(s) 241, 396, 1377
PspPI GGNCC 5 cut(s) 234, 282, 1762, 1801, 2628
PspPPI RGGWCCY 1 cut(s) 1801
PstI CTGCAG 3 cut(s) 19, 1345, 1384
PstNI CAGNNNCTG 2 cut(s) 881, 1790
PsuI RGATCY 2 cut(s) 1741, 2113
PvuII CAGCTG 2 cut(s) 1346, 2240
RsaI GTAC 8 cut(s) 511, 814, 1128, 1350, 1377, 1471, 1709, 2846
RsaNI GTAC 8 cut(s) 510, 813, 1127, 1349, 1376, 1470, 1708, 2845
RseI CAYNNNNRTG 2 cut(s) 756, 1848
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 401, 719, 837, 975, 2781
Sau3AI GATC 8 cut(s) 733, 748, 1390, 1699, 1741, 2113, 2509, 2810
Sau96I GGNCC 5 cut(s) 234, 282, 1762, 1801, 2628
SchI GAGTC 3 cut(s) 206, 251, 971
SduI GDGCHC 6 cut(s) 35, 55, 120, 212, 399, 1516
SexAI ACCWGGT 1 cut(s) 1456
SfaNI GCATC 7 cut(s) 90, 629, 1840, 2044, 2356, 2538, 2581
SfcI CTRYAG 6 cut(s) 15, 38, 807, 999, 1341, 1380
Sfr274I CTCGAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 234, 282, 1801
SlaI CTCGAG 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 756, 1848
SmlI CTYRAG 7 cut(s) 534, 782, 1050, 1651, 1663, 2123, 2651
SmoI CTYRAG 7 cut(s) 534, 782, 1050, 1651, 1663, 2123, 2651
SseBI AGGCCT 1 cut(s) 1217
SsiI CCGC 6 cut(s) 171, 175, 344, 1185, 2173, 2882
SspI AATATT 2 cut(s) 1567, 2215
SspMI CTAG 9 cut(s) 587, 798, 1073, 1766, 1920, 2264, 2411, 2505, 2871
SstI GAGCTC 1 cut(s) 35
StuI AGGCCT 1 cut(s) 1217
StyI CCWWGG 4 cut(s) 1072, 1624, 2436, 2838
TaaI ACNGT 6 cut(s) 81, 568, 973, 1126, 1333, 2620
TaiI ACGT 6 cut(s) 719, 1477, 1593, 1672, 1738, 2236
TaqI TCGA 8 cut(s) 112, 195, 535, 603, 705, 858, 1489, 1520
TaqII GACCGA 1 cut(s) 394
TatI WGTACW 5 cut(s) 1126, 1348, 1469, 1707, 2844
TauI GCSGC 3 cut(s) 174, 177, 347
Tru1I TTAA 5 cut(s) 401, 719, 837, 975, 2781
Tru9I TTAA 5 cut(s) 401, 719, 837, 975, 2781
TscAI CASTG 2 cut(s) 217, 2670
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 9 cut(s) 17, 166, 1343, 1415, 1961, 2237, 2290, 2789, 2827
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 3 cut(s) 1692, 2437, 2546
TspRI CASTG 2 cut(s) 217, 2670
Van91I CCANNNNNTGG 2 cut(s) 1630, 2448
VpaK11BI GGWCC 3 cut(s) 234, 282, 1801
XagI CCTNNNNNAGG 1 cut(s) 2225
XapI RAATTY 4 cut(s) 58, 924, 1297, 2635
XceI RCATGY 1 cut(s) 1857
XcmI CCANNNNNNNNNTGG 1 cut(s) 1627
XhoI CTCGAG 1 cut(s) 534
XmaJI CCTAGG 1 cut(s) 1072
XmiI GTMKAC 1 cut(s) 1318
XmnI GAANNNNTTC 2 cut(s) 1150, 1301
XspI CTAG 9 cut(s) 587, 798, 1073, 1766, 1920, 2264, 2411, 2505, 2871
Zsp2I ATGCAT 2 cut(s) 622, 1855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.