Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Forward (+)

25451353 .. 25452168

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24950.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACAGTGACTGCAACTTGCTCTCCGAGCTCCCTCCAGCTTCGCTTCGCTTTCAATTGCGGCAATTGCGGCAATTGCGGTAAAGCATCCTCCGTTCTCGTACGTAGGCGATTGGGGAAGCTGGATCGTCGGGCCCGAGTGCTCTGCGTTGCTCAGGGCAATGAGAGGTCCGGGGCTGAATTGGAGCCCCGTCGCAATGGGGGTTCGTGGGTCGGGTCGAATTCAAATGCTGACGGGTTTAAAGGGTGGTCCAATTCAGATAATGGGGAAGAGTCATTGGACTCACAGAGGAAGAAATGGTTTTTAGGGACTGTGGGAGCTGGAGTTGCCGGAGTCGTTCTTGTTGCGGGGCTTACTTTTGCGGCATTGTCTTTGGGAAAGCGAAACAATTCAAAAGATGTAGATCGATCAAAGCAATGTGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

144

Amino Acids

15.18

Weight (kDa)

9.58

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	63, 72, 81, 350, 365
AclWI	GGATC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	58, 228, 396
AluBI	AGCT	4 cut(s)	33, 43, 124, 323
AluI	AGCT	4 cut(s)	33, 43, 124, 323
Alw21I	GWGCWC	2 cut(s)	35, 147
AlwI	GGATC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	135
ApaI	GGGCCC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	4 cut(s)	135, 136, 171, 252
AsuC2I	CCSGG	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	171, 252
BaeGI	GKGCMC	1 cut(s)	139
BanII	GRGCYC	3 cut(s)	35, 139, 192
Bbv12I	GWGCWC	2 cut(s)	35, 147
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BcnI	CCSGG	1 cut(s)	175
BisI	GCNGC	3 cut(s)	64, 73, 366
BlsI	GCNGC	3 cut(s)	65, 74, 367
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	171, 252
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	4 cut(s)	135, 136, 171, 252
BmiI	GGNNCC	2 cut(s)	137, 189
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	23, 345
Bpu10I	CCTNAGC	1 cut(s)	156
BpuMI	CCSGG	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 312, 342
Bse3DI	GCAATG	3 cut(s)	169, 205, 425
Bse8I	GATNNNNATC	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	405
BseMI	GCAATG	3 cut(s)	169, 205, 425
BseMII	CTCAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	139
BshFI	GGCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	35, 147
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	174, 333
BsiWI	CGTACG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	138
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	4 cut(s)	35, 139, 147, 192
Bsp143I	GATC	3 cut(s)	127, 406, 410
BspACI	CCGC	5 cut(s)	63, 72, 81, 350, 365
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	137, 189
BspPI	GGATC	1 cut(s)	135
BsrDI	GCAATG	3 cut(s)	169, 205, 425
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	127, 406, 410
Bst4CI	ACNGT	2 cut(s)	10, 316
Bst6I	CTCTTC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	130, 409, 413
BstMBI	GATC	3 cut(s)	127, 406, 410
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 69, 72, 78, 329
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	139
BstSNI	TACGTA	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	15
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	4 cut(s)	135, 136, 171, 252
ClaI	ATCGAT	1 cut(s)	409
Csp6I	GTAC	1 cut(s)	104
CviJI	RGCY	8 cut(s)	33, 43, 124, 137, 179, 190, 323, 355
CviKI_1	RGCY	8 cut(s)	33, 43, 124, 137, 179, 190, 323, 355
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	129, 408, 412
DpnII	GATC	3 cut(s)	127, 406, 410
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	33
Eco105I	TACGTA	1 cut(s)	107
Eco24I	GRGCYC	3 cut(s)	35, 139, 192
Eco47I	GGWCC	2 cut(s)	171, 252
Eco53kI	GAGCTC	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	223
EcoT38I	GRGCYC	3 cut(s)	35, 139, 192
FaqI	GGGAC	1 cut(s)	325
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	64, 73, 366
FokI	GGATG	1 cut(s)	76
FriOI	GRGCYC	3 cut(s)	35, 139, 192
Fsp4HI	GCNGC	3 cut(s)	64, 73, 366
GluI	GCNGC	3 cut(s)	64, 73, 366
GsuI	CTGGAG	2 cut(s)	23, 345
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	174, 333
HinfI	GANTC	3 cut(s)	275, 284, 336
HpaII	CCGG	2 cut(s)	174, 333
Hpy188I	TCNGA	2 cut(s)	30, 262
Hpy99I	CGWCG	2 cut(s)	135, 198
HpyCH4III	ACNGT	2 cut(s)	10, 316
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 69, 72, 78, 329
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	127, 406, 410
LmnI	GCTCC	3 cut(s)	38, 187, 320
LpnPI	CCDG	6 cut(s)	53, 110, 143, 187, 309, 346
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	129, 408, 412
MboI	GATC	3 cut(s)	127, 406, 410
MboII	GAAGA	2 cut(s)	284, 307
MfeI	CAATTG	3 cut(s)	58, 67, 76
MhlI	GDGCHC	4 cut(s)	35, 139, 147, 192
MluCI	AATT	7 cut(s)	58, 67, 76, 182, 223, 256, 391
MlyI	GAGTC	3 cut(s)	278, 284, 345
MnlI	CCTC	4 cut(s)	47, 103, 162, 285
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	243
MspI	CCGG	2 cut(s)	174, 333
MspR9I	CCNGG	1 cut(s)	175
MunI	CAATTG	3 cut(s)	58, 67, 76
MwoI	GCNNNNNNNGC	5 cut(s)	30, 69, 72, 78, 329
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	127, 406, 410
NlaIV	GGNNCC	2 cut(s)	137, 189
NmuCI	GTSAC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	391
Pfl23II	CGTACG	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	65, 74, 367
PleI	GAGTC	3 cut(s)	278, 283, 344
PpsI	GAGTC	3 cut(s)	278, 283, 344
Ppu21I	YACGTR	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	35
PspLI	CGTACG	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	137, 189
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	4 cut(s)	135, 136, 171, 252
PstNI	CAGNNNCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	64, 73, 366
Sau3AI	GATC	3 cut(s)	127, 406, 410
Sau96I	GGNCC	4 cut(s)	135, 136, 171, 252
SchI	GAGTC	3 cut(s)	278, 284, 345
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	4 cut(s)	35, 139, 147, 192
SetI	ASST	6 cut(s)	35, 45, 109, 126, 173, 325
SfaNI	GCATC	1 cut(s)	98
SinI	GGWCC	2 cut(s)	171, 252
SnaBI	TACGTA	1 cut(s)	107
Sse9I	AATT	7 cut(s)	58, 67, 76, 182, 223, 256, 391
SsiI	CCGC	5 cut(s)	63, 72, 81, 350, 365
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	10, 316
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	221, 409
TasI	AATT	7 cut(s)	58, 67, 76, 182, 223, 256, 391
TauI	GCSGC	3 cut(s)	66, 75, 368
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	171, 252
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.