Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Forward (+)

66304685 .. 66309921

Gene Structure 5237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG395500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGTGTCTGCGAGCAGTACCTAAACCGCAGATGGAGCCGTTAACAACAGAGCAGGAGGTGCTATTGGTGAATGATGATGTCAATGCAGAGGGTGTGGATGAGCAGAGCAACATGAAGCAAGATGGTGGTGGTCCGGAAGAAAAGGCAGGTACTAACAAGGATTATTCTTCATCTCGAGAAATTGATGTGTCTCCTGGTTTATATAGAGTTGGTAATGATTATGATCTAGGGGAGTTGTCAGTCGAAGAGTTTGAGTATGCATCCGGTGGTGGTTCTGAGGCCATCAACAGCGCTTCCATTCAAGAAGATTTGCAACATGAATCAACTTCTGATGACAAGTCAGTCGAGCCTGAAACGTTAACAAGGCAGTTTGATCTGCCTGAATCTGATCATGGCAATGATTCTTTTGTTGCCTCTGGGCTTGAGGATTCTGATAGTAGCCTCGCTGTAGGTACAGGAGATTTGACTTCTGAACTTAAAGAGAACCCGGTTAGTGTCGAACCAATCAAGTTGCCAGTCTCTGACGCTATGAATTCAAACCTTAGCATTGAACCCCAGGATGAAATTCCTGGGGCAAGTGAAAATCAAACTGCCACTTCTGAGTCTTCTACTGTTATTGCACATGAACACAATGAATCTATAGCTGTGGATGTTTCAGTTTCTTCGGAATCAAACATTCTTTTAGAACCTCAAGTATTGTCTAAAGATAACCTAGGAGTTGTAGCCTCGTCTTCAACCAAAGAAAACCTTGACCCAAGTGAAACAGTACAGGTCTTGGCTGAGGGAAATAGTTCCTCCCTGGAAGTGCATACCATAACTGAAAGTGGGTCATCTGCAACATCTGTGTCAGAACAGGCCTATCAAAATGCAAATGAACAATACACATATTATTCTAATGATACAAATACAAGCAAATCACAATTACCAACTCCTCGGAATTCCTTCTCTTCTGCTGGTATACCTGCTCCAACTGTGGTTTCTGCAGCTGTACAGGTGCTTCCTGGAAAGGTTTTGGTACCTGCAGTTGTTGATCAGGTTCAGGGGCAGGCATTAGCAGCTCTACAAGTGTTGAAGGTCGTAGAGGCTGATGTTCAACCTGGTGATTTGTGTACACGTCGTGAATATGCTCGATGGTTGGTATCTGCAAGTAGTGCTCTTTCGAGGAACTCAGTATCTAAAGTATATCCTGCAATGTATATTGAGAATATTACTGAGCTTGCATTTGATGACGTTACACCTGAAGACCCTGATTTCCCTTCCATCCAAGGTTTGGCTGAATCTGGACTTATCTCAAGTAAGCTCTCAAGACGTGATATGGATTCTTCGTTGGATGAGGACGAGGGTCCATTGTACTTCTCTCCTGAAAGCGCTCTATCACGTCAAGATCTTGTAAGCTGGAAGATGGCCCTAGAGAAAAGACATCTTCCAGAAGCTGACAGGAAGGTCCTCCACCAAATCTCAGGATTCATTGATACTGATAAGATACACCCAGATGCATGTCCTGCACTTGTTGCTGATCTATCTGGAGAACAGGGTATTATTGCTCTTGCATTTGGTTACACTAGACTTTTTCAGCCAAATAAGCCGGTAACAAAAGCCCAGGCTGCTATTGCTCTTGCAACTGGTGAGTATGCTGATGTAGTTAGCGAGGAGCTTGCACGCATTGAAGCAGAAGCTATGGCAGAAAAGGCTGTTGATGCACATAATGCTTTAGTAGCCCAAGTTGAAAAGGATGTGAATGCAAGTTTTGAGAAGGATCTTTCCCTTGAGAGGGAAAAAATTGATGCTGTGGAGAGAATGGCTGAAGAAGCAAAGCGGGAATTGGAAAGGTTGAGGGCTGAGAGAGAGGCAGATAATATTGCCCTGATGAAGGAACGTGCAGCTGTTGAATCAGAAATGGAAGTTCTAGCTAGGTTGAGGCATGAGGTGGAGGAGCAATTAGAGAACCTAATGAGTAACAAAGTAGAGATATCATTTGAAAAGGAAAGAGTTAGCAAACTTAGGAAAGATGCAGAAAATGAAAGCCAGGAGATTGCTCGTTTGCAGTATGATCTAGAGGTTGAACGGAAAGCCTTGTCCATGGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

696

Amino Acids

75.74

Weight (kDa)

4.39

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	341, 1442
Acc36I	ACCTGC	3 cut(s)	137, 970, 1027
Acc65I	GGTACC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	1015
AccB7I	CCANNNNNTGG	1 cut(s)	1270
AccI	GTMKAC	1 cut(s)	958
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	2 cut(s)	26, 1816
AclI	AACGTT	1 cut(s)	356
AclWI	GGATC	1 cut(s)	1764
AcoI	YGGCCR	1 cut(s)	2082
AcsI	RAATTY	3 cut(s)	532, 564, 937
AcuI	CTGAAG	2 cut(s)	1260, 1824
AdeI	CACNNNGTG	1 cut(s)	1118
AfaI	GTAC	8 cut(s)	18, 151, 454, 768, 990, 1017, 1111, 1352
AfeI	AGCGCT	2 cut(s)	292, 1369
AfiI	CCNNNNNNNGG	5 cut(s)	1270, 1770, 1771, 1870, 2085
AflIII	ACRYGT	1 cut(s)	1112
AjiI	CACGTC	3 cut(s)	1115, 1310, 1379
AjnI	CCWGG	9 cut(s)	193, 555, 568, 798, 1000, 1096, 1599, 2025, 2084
AjuI	GAANNNNNNNTTGG	2 cut(s)	961, 993
Alw21I	GWGCWC	1 cut(s)	1156
Alw26I	GTCTC	2 cut(s)	195, 523
AlwI	GGATC	1 cut(s)	1764
AlwNI	CAGNNNCTG	2 cut(s)	521, 1433
Ama87I	CYCGRG	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	133
Aor51HI	AGCGCT	2 cut(s)	292, 1369
AoxI	GGCC	4 cut(s)	279, 855, 1404, 2082
ApeKI	GCWGC	4 cut(s)	983, 1055, 1604, 1880
ApoI	RAATTY	3 cut(s)	532, 564, 937
Asp700I	GAANNNNTTC	2 cut(s)	790, 941
Asp718I	GGTACC	1 cut(s)	1015
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	2 cut(s)	293, 1370
AspS9I	GGNCC	4 cut(s)	131, 1343, 1405, 1444
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	3 cut(s)	79, 1112, 1637
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	3 cut(s)	131, 1343, 1444
AvrII	CCTAGG	1 cut(s)	712
BalI	TGGCCA	1 cut(s)	2084
BanI	GGYRCC	1 cut(s)	1015
BarI	GAAGNNNNNNTAC	2 cut(s)	981, 1013
BbsI	GAAGAC	3 cut(s)	597, 723, 1248
Bbv12I	GWGCWC	1 cut(s)	1156
BbvCI	CCTCAGC	1 cut(s)	780
BbvI	GCAGC	4 cut(s)	995, 1067, 1591, 1892
BccI	CCATC	6 cut(s)	25, 116, 290, 1125, 1268, 1396
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	1637, 1671
BciT130I	CCWGG	9 cut(s)	195, 557, 570, 800, 1002, 1098, 1601, 2027, 2086
BclI	TGATCA	2 cut(s)	388, 1030
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	195, 523
BfaI	CTAG	7 cut(s)	227, 713, 1409, 1563, 1907, 1911, 2054
BfmI	CTRYAG	4 cut(s)	447, 639, 981, 1020
BfoI	RGCGCY	2 cut(s)	294, 1371
BfuAI	ACCTGC	3 cut(s)	137, 970, 1027
BglII	AGATCT	1 cut(s)	1384
BisI	GCNGC	4 cut(s)	984, 1056, 1605, 1881
BlnI	CCTAGG	1 cut(s)	712
BlsI	GCNGC	4 cut(s)	985, 1057, 1606, 1882
Bme18I	GGWCC	3 cut(s)	131, 1343, 1444
BmeT110I	CYCGRG	1 cut(s)	174
BmgBI	CACGTC	3 cut(s)	1115, 1310, 1379
BmgT120I	GGNCC	4 cut(s)	131, 1343, 1405, 1444
BmiI	GGNNCC	3 cut(s)	36, 1017, 1344
BmsI	GCATC	5 cut(s)	269, 1483, 1687, 1774, 1999
BoxI	GACNNNNGTC	1 cut(s)	1341
BpiI	GAAGAC	3 cut(s)	597, 723, 1248
BpmI	CTGGAG	1 cut(s)	1545
Bpu10I	CCTNAGC	2 cut(s)	542, 780
BpuEI	CTTGAG	5 cut(s)	443, 675, 1276, 1288, 1787
BpuMI	CCSGG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	8 cut(s)	555, 569, 712, 798, 932, 1264, 1599, 2079
BsaWI	WCCGGW	2 cut(s)	133, 263
Bsc4I	CCNNNNNNNGG	5 cut(s)	1270, 1770, 1771, 1870, 2085
Bse118I	RCCGGY	1 cut(s)	1585
Bse1I	ACTGG	2 cut(s)	515, 1627
Bse3DI	GCAATG	2 cut(s)	403, 1197
Bse8I	GATNNNNATC	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	9 cut(s)	195, 557, 570, 800, 1002, 1098, 1601, 2027, 2086
BseDI	CCNNGG	8 cut(s)	555, 569, 712, 798, 932, 1264, 1599, 2079
BseGI	GGATG	7 cut(s)	103, 260, 565, 655, 1260, 1336, 1738
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	5 cut(s)	1270, 1770, 1771, 1870, 2085
BseMI	GCAATG	2 cut(s)	403, 1197
BseMII	CTCAG	7 cut(s)	267, 591, 771, 1182, 1203, 1473, 1830
BseNI	ACTGG	2 cut(s)	515, 1627
BseRI	GAGGAG	3 cut(s)	921, 1664, 1946
BseXI	GCAGC	4 cut(s)	995, 1067, 1591, 1892
BsgI	GTGCAG	2 cut(s)	1488, 1899
BshFI	GGCC	4 cut(s)	281, 857, 1406, 2084
BshNI	GGYRCC	1 cut(s)	1015
BsiHKAI	GWGCWC	1 cut(s)	1156
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	4 cut(s)	134, 264, 488, 1586
BslI	CCNNNNNNNGG	5 cut(s)	1270, 1770, 1771, 1870, 2085
BsmAI	GTCTC	2 cut(s)	195, 523
BsmI	GAATGC	1 cut(s)	1744
BsnI	GGCC	4 cut(s)	281, 857, 1406, 2084
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	1156
Bsp13I	TCCGGA	1 cut(s)	133
Bsp1407I	TGTACA	2 cut(s)	988, 1109
Bsp143I	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
Bsp19I	CCATGG	1 cut(s)	2079
BspACI	CCGC	2 cut(s)	26, 1816
BspANI	GGCC	4 cut(s)	281, 857, 1406, 2084
BspCNI	CTCAG	7 cut(s)	268, 592, 772, 1181, 1204, 1472, 1831
BspEI	TCCGGA	1 cut(s)	133
BspLI	GGNNCC	3 cut(s)	36, 1017, 1344
BspMAI	CTGCAG	2 cut(s)	985, 1024
BspMI	ACCTGC	3 cut(s)	137, 970, 1027
BspPI	GGATC	1 cut(s)	1764
BspT107I	GGYRCC	1 cut(s)	1015
BsrDI	GCAATG	2 cut(s)	403, 1197
BsrFI	RCCGGY	1 cut(s)	1585
BsrGI	TGTACA	2 cut(s)	988, 1109
BsrI	ACTGG	2 cut(s)	515, 1627
BssAI	RCCGGY	1 cut(s)	1585
BssECI	CCNNGG	8 cut(s)	555, 569, 712, 798, 932, 1264, 1599, 2079
BssMI	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
BssNAI	GTATAC	1 cut(s)	959
BssT1I	CCWWGG	3 cut(s)	712, 1264, 2079
Bst1107I	GTATAC	1 cut(s)	959
Bst2UI	CCWGG	9 cut(s)	195, 557, 570, 800, 1002, 1098, 1601, 2027, 2086
Bst4CI	ACNGT	3 cut(s)	613, 766, 973
Bst6I	CTCTTC	2 cut(s)	240, 952
BstAPI	GCANNNNNTGC	5 cut(s)	58, 1151, 1502, 1511, 1706
BstAUI	TGTACA	2 cut(s)	988, 1109
BstC8I	GCNNGC	5 cut(s)	12, 1047, 1218, 1656, 1660
BstDEI	CTNAG	9 cut(s)	276, 542, 600, 780, 1168, 1212, 1459, 1839, 2000
BstDSI	CCRYGG	1 cut(s)	2079
BstENI	CCTNNNNNAGG	1 cut(s)	1868
BstF5I	GGATG	7 cut(s)	103, 260, 565, 655, 1260, 1336, 1738
BstH2I	RGCGCY	2 cut(s)	294, 1371
BstHHI	GCGC	2 cut(s)	293, 1370
BstKTI	GATC	8 cut(s)	226, 376, 391, 1033, 1387, 1519, 1759, 2053
BstMAI	GTCTC	2 cut(s)	195, 523
BstMBI	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
BstNI	CCWGG	9 cut(s)	195, 557, 570, 800, 1002, 1098, 1601, 2027, 2086
BstNSI	RCATGY	1 cut(s)	1500
BstPAI	GACNNNNGTC	1 cut(s)	1341
BstSFI	CTRYAG	4 cut(s)	447, 639, 981, 1020
BstV1I	GCAGC	4 cut(s)	995, 1067, 1591, 1892
BstV2I	GAAGAC	3 cut(s)	597, 723, 1248
BstX2I	RGATCY	2 cut(s)	1384, 1756
BstYI	RGATCY	2 cut(s)	1384, 1756
BstZ17I	GTATAC	1 cut(s)	959
BsuRI	GGCC	4 cut(s)	281, 857, 1406, 2084
BtgI	CCRYGG	1 cut(s)	2079
BtrI	CACGTC	3 cut(s)	1115, 1310, 1379
BtsCI	GGATG	7 cut(s)	103, 260, 565, 655, 1260, 1336, 1738
BveI	ACCTGC	3 cut(s)	137, 970, 1027
Cac8I	GCNNGC	5 cut(s)	12, 1047, 1218, 1656, 1660
CaiI	CAGNNNCTG	2 cut(s)	521, 1433
CfoI	GCGC	2 cut(s)	293, 1370
Cfr10I	RCCGGY	1 cut(s)	1585
Cfr13I	GGNCC	4 cut(s)	131, 1343, 1405, 1444
CseI	GACGC	1 cut(s)	533
CsiI	ACCWGGT	1 cut(s)	1096
Csp6I	GTAC	8 cut(s)	17, 150, 453, 767, 989, 1016, 1110, 1351
CviAII	CATG	7 cut(s)	112, 317, 392, 623, 1497, 1922, 2080
CviQI	GTAC	8 cut(s)	17, 150, 453, 767, 989, 1016, 1110, 1351
DdeI	CTNAG	9 cut(s)	276, 542, 600, 780, 1168, 1212, 1459, 1839, 2000
DpnI	GATC	8 cut(s)	225, 375, 390, 1032, 1386, 1518, 1758, 2052
DpnII	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
DraIII	CACNNNGTG	1 cut(s)	1118
DrdI	GACNNNNNNGTC	2 cut(s)	341, 1442
DseDI	GACNNNNNNGTC	2 cut(s)	341, 1442
EaeI	YGGCCR	1 cut(s)	2082
Eam1104I	CTCTTC	2 cut(s)	240, 952
EarI	CTCTTC	2 cut(s)	240, 952
Eco130I	CCWWGG	3 cut(s)	712, 1264, 2079
Eco147I	AGGCCT	1 cut(s)	857
Eco32I	GATATC	1 cut(s)	1971
Eco47I	GGWCC	3 cut(s)	131, 1343, 1444
Eco47III	AGCGCT	2 cut(s)	292, 1369
Eco57I	CTGAAG	2 cut(s)	1260, 1824
Eco88I	CYCGRG	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	1868
EcoO109I	RGGNCCY	1 cut(s)	1444
EcoRI	GAATTC	2 cut(s)	532, 937
EcoRII	CCWGG	9 cut(s)	193, 555, 568, 798, 1000, 1096, 1599, 2025, 2084
EcoRV	GATATC	1 cut(s)	1971
EcoT14I	CCWWGG	3 cut(s)	712, 1264, 2079
EcoT22I	ATGCAT	2 cut(s)	262, 1498
ErhI	CCWWGG	3 cut(s)	712, 1264, 2079
FaeI	CATG	7 cut(s)	115, 320, 395, 626, 1500, 1925, 2083
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FatI	CATG	7 cut(s)	111, 316, 391, 622, 1496, 1921, 2079
FauI	CCCGC	1 cut(s)	1809
FbaI	TGATCA	2 cut(s)	388, 1030
FblI	GTMKAC	1 cut(s)	958
Fnu4HI	GCNGC	4 cut(s)	984, 1056, 1605, 1881
FokI	GGATG	7 cut(s)	110, 247, 572, 662, 1247, 1343, 1745
Fsp4HI	GCNGC	4 cut(s)	984, 1056, 1605, 1881
FspBI	CTAG	7 cut(s)	227, 713, 1409, 1563, 1907, 1911, 2054
GlaI	GCGC	2 cut(s)	292, 1369
GluI	GCNGC	4 cut(s)	984, 1056, 1605, 1881
GsuI	CTGGAG	1 cut(s)	1545
HaeII	RGCGCY	2 cut(s)	294, 1371
HaeIII	GGCC	4 cut(s)	281, 857, 1406, 2084
HapII	CCGG	4 cut(s)	134, 264, 488, 1586
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	2 cut(s)	293, 1370
Hin1II	CATG	7 cut(s)	115, 320, 395, 626, 1500, 1925, 2083
Hin6I	GCGC	2 cut(s)	291, 1368
HinP1I	GCGC	2 cut(s)	291, 1368
HincII	GTYRAC	2 cut(s)	42, 360
HindII	GTYRAC	2 cut(s)	42, 360
HpaI	GTTAAC	2 cut(s)	42, 360
HpaII	CCGG	4 cut(s)	134, 264, 488, 1586
HphI	GGTGA	3 cut(s)	79, 1112, 1637
Hpy166II	GTNNAC	5 cut(s)	42, 360, 959, 1110, 1112
Hpy8I	GTNNAC	5 cut(s)	42, 360, 959, 1110, 1112
Hpy99I	CGWCG	1 cut(s)	1119
HpyAV	CCTTC	6 cut(s)	952, 1066, 1266, 1435, 1747, 1864
HpyCH4III	ACNGT	3 cut(s)	613, 766, 973
HpyCH4IV	ACGT	6 cut(s)	356, 1114, 1230, 1309, 1378, 1876
HpyF3I	CTNAG	9 cut(s)	276, 542, 600, 780, 1168, 1212, 1459, 1839, 2000
HpySE526I	ACGT	6 cut(s)	356, 1114, 1230, 1309, 1378, 1876
Hsp92II	CATG	7 cut(s)	115, 320, 395, 626, 1500, 1925, 2083
HspAI	GCGC	2 cut(s)	291, 1368
Kpn2I	TCCGGA	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	1019
Ksp22I	TGATCA	2 cut(s)	388, 1030
KspAI	GTTAAC	2 cut(s)	42, 360
Kzo9I	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
LmnI	GCTCC	4 cut(s)	34, 970, 1651, 1933
Lsp1109I	GCAGC	4 cut(s)	995, 1067, 1591, 1892
LweI	GCATC	5 cut(s)	269, 1483, 1687, 1774, 1999
MabI	ACCWGGT	1 cut(s)	1096
MaeI	CTAG	7 cut(s)	227, 713, 1409, 1563, 1907, 1911, 2054
MaeII	ACGT	6 cut(s)	356, 1114, 1230, 1309, 1378, 1876
MaeIII	GTNAC	4 cut(s)	1231, 1556, 1588, 1955
MalI	GATC	8 cut(s)	225, 375, 390, 1032, 1386, 1518, 1758, 2052
MboI	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
MflI	RGATCY	2 cut(s)	1384, 1756
MhlI	GDGCHC	1 cut(s)	1156
MlsI	TGGCCA	1 cut(s)	2084
MluCI	AATT	8 cut(s)	180, 532, 564, 920, 937, 1779, 1820, 1937
MluNI	TGGCCA	1 cut(s)	2084
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	2 cut(s)	992, 1308
Mox20I	TGGCCA	1 cut(s)	2084
Mph1103I	ATGCAT	2 cut(s)	262, 1498
MroI	TCCGGA	1 cut(s)	133
MroXI	GAANNNNTTC	2 cut(s)	790, 941
MscI	TGGCCA	1 cut(s)	2084
MseI	TTAA	3 cut(s)	41, 359, 477
MslI	CAYNNNNRTG	2 cut(s)	396, 1491
Msp20I	TGGCCA	1 cut(s)	2084
MspA1I	CMGCKG	2 cut(s)	986, 1883
MspI	CCGG	4 cut(s)	134, 264, 488, 1586
Mva1269I	GAATGC	1 cut(s)	1744
MvaI	CCWGG	9 cut(s)	195, 557, 570, 800, 1002, 1098, 1601, 2027, 2086
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	2079
NdeII	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
NlaIII	CATG	7 cut(s)	115, 320, 395, 626, 1500, 1925, 2083
NlaIV	GGNNCC	3 cut(s)	36, 1017, 1344
NsiI	ATGCAT	2 cut(s)	262, 1498
NspI	RCATGY	1 cut(s)	1500
PaeR7I	CTCGAG	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	857
PctI	GAATGC	1 cut(s)	1744
PdmI	GAANNNNTTC	2 cut(s)	790, 941
PflMI	CCANNNNNTGG	1 cut(s)	1270
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	4 cut(s)	985, 1057, 1606, 1882
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PpuMI	RGGWCCY	1 cut(s)	1444
PshAI	GACNNNNGTC	1 cut(s)	1341
Psp1406I	AACGTT	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	1444
Psp6I	CCWGG	9 cut(s)	193, 555, 568, 798, 1000, 1096, 1599, 2025, 2084
PspGI	CCWGG	9 cut(s)	193, 555, 568, 798, 1000, 1096, 1599, 2025, 2084
PspN4I	GGNNCC	3 cut(s)	36, 1017, 1344
PspPI	GGNCC	4 cut(s)	131, 1343, 1405, 1444
PspPPI	RGGWCCY	1 cut(s)	1444
PstI	CTGCAG	2 cut(s)	985, 1024
PstNI	CAGNNNCTG	2 cut(s)	521, 1433
PsuI	RGATCY	2 cut(s)	1384, 1756
PvuII	CAGCTG	2 cut(s)	986, 1883
RsaI	GTAC	8 cut(s)	18, 151, 454, 768, 990, 1017, 1111, 1352
RsaNI	GTAC	8 cut(s)	17, 150, 453, 767, 989, 1016, 1110, 1351
RseI	CAYNNNNRTG	2 cut(s)	396, 1491
SaqAI	TTAA	3 cut(s)	41, 359, 477
SatI	GCNGC	4 cut(s)	984, 1056, 1605, 1881
Sau3AI	GATC	8 cut(s)	223, 373, 388, 1030, 1384, 1516, 1756, 2050
Sau96I	GGNCC	4 cut(s)	131, 1343, 1405, 1444
SchI	GAGTC	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	1156
SexAI	ACCWGGT	1 cut(s)	1096
SfaNI	GCATC	5 cut(s)	269, 1483, 1687, 1774, 1999
SfcI	CTRYAG	4 cut(s)	447, 639, 981, 1020
Sfr274I	CTCGAG	1 cut(s)	174
SinI	GGWCC	3 cut(s)	131, 1343, 1444
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	396, 1491
SmlI	CTYRAG	6 cut(s)	174, 422, 690, 1291, 1303, 1766
SmoI	CTYRAG	6 cut(s)	174, 422, 690, 1291, 1303, 1766
Sse9I	AATT	8 cut(s)	180, 532, 564, 920, 937, 1779, 1820, 1937
SseBI	AGGCCT	1 cut(s)	857
SsiI	CCGC	2 cut(s)	26, 1816
SspI	AATATT	2 cut(s)	1207, 1858
SspMI	CTAG	7 cut(s)	227, 713, 1409, 1563, 1907, 1911, 2054
StuI	AGGCCT	1 cut(s)	857
StyI	CCWWGG	3 cut(s)	712, 1264, 2079
TaaI	ACNGT	3 cut(s)	613, 766, 973
TaiI	ACGT	6 cut(s)	359, 1117, 1233, 1312, 1381, 1879
TaqI	TCGA	6 cut(s)	175, 243, 345, 498, 1129, 1160
TasI	AATT	8 cut(s)	180, 532, 564, 920, 937, 1779, 1820, 1937
TatI	WGTACW	4 cut(s)	766, 988, 1109, 1350
Tru1I	TTAA	3 cut(s)	41, 359, 477
Tru9I	TTAA	3 cut(s)	41, 359, 477
TseI	GCWGC	4 cut(s)	983, 1055, 1604, 1880
TspGWI	ACGGA	1 cut(s)	2080
Van91I	CCANNNNNTGG	1 cut(s)	1270
VpaK11BI	GGWCC	3 cut(s)	131, 1343, 1444
XagI	CCTNNNNNAGG	1 cut(s)	1868
XapI	RAATTY	3 cut(s)	532, 564, 937
XbaI	TCTAGA	1 cut(s)	2053
XceI	RCATGY	1 cut(s)	1500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1267
XhoI	CTCGAG	1 cut(s)	174
XmaJI	CCTAGG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	958
XmnI	GAANNNNTTC	2 cut(s)	790, 941
XspI	CTAG	7 cut(s)	227, 713, 1409, 1563, 1907, 1911, 2054
Zsp2I	ATGCAT	2 cut(s)	262, 1498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.