Rmu_sc0040285.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040285.1
OG0003381
Physical Location & Seq
Forward (+)
35 .. 759
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040285.1_g000001.1.cds

Sequence Viewer

Length: 518 bp
atggccaatgtgactgcagcatggtctccgagctcgctacagcttcgctgggccctcaattgcagtaaaccgtcgccaattctggtgaggatgcgccgggttcgagtgctctgtgttgctcccgacacagggaggagtgctgggaataatggactgcagcgcggcggccgcggtgggagttcgtgggtcgagtccaagccgggcactgccgatggcttgtccgggtggtccggttccgatgatgaagaccactcgcagaagaagaagaaatggtcccccggagggcttgtgggagctggagtagccggagtgattcttgttgcaggggttaccttcgcggcattgtcttctggaaaaaaagccaatacaatacctaaaccgcagatggagccgttaacaacagagcaggaggtgctattggtgaatgatgatgtcaatgcagagggtgcggatgagcaaagcaacacgaagcaagatggtggtagtccggaagaaaaggcaggtactaacaaggatta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLH

Protein Analysis

172

Amino Acids

17.9

Weight (kDa)

7.75

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 491
AccII CGCG 3 cut(s) 162, 171, 338
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 7 cut(s) 162, 165, 169, 171, 338, 380, 449
AcoI YGGCCR 2 cut(s) 3, 166
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 3 cut(s) 128, 129, 282
AluBI AGCT 3 cut(s) 33, 43, 296
AluI AGCT 3 cut(s) 33, 43, 296
Alw21I GWGCWC 2 cut(s) 35, 111
Alw26I GTCTC 1 cut(s) 30
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 3 cut(s) 3, 51, 166
ApaI GGGCCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 17, 157
AspLEI GCGC 2 cut(s) 96, 162
AspS9I GGNCC 4 cut(s) 51, 52, 228, 273
AsuC2I CCSGG 4 cut(s) 98, 201, 223, 279
AsuHPI GGTGA 2 cut(s) 97, 433
AvaII GGWCC 2 cut(s) 228, 273
BaeGI GKGCMC 2 cut(s) 55, 206
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 35, 55
BbsI GAAGAC 2 cut(s) 252, 339
Bbv12I GWGCWC 2 cut(s) 35, 111
BbvI GCAGC 2 cut(s) 29, 169
BccI CCATC 3 cut(s) 206, 379, 470
BceAI ACGGC 1 cut(s) 376
BcnI CCSGG 4 cut(s) 98, 201, 223, 279
BcoDI GTCTC 1 cut(s) 30
BfmI CTRYAG 3 cut(s) 15, 38, 155
BfuAI ACCTGC 1 cut(s) 491
BisI GCNGC 6 cut(s) 18, 158, 163, 166, 169, 339
BlsI GCNGC 6 cut(s) 19, 159, 164, 167, 170, 340
Bme1390I CCNGG 4 cut(s) 98, 201, 223, 279
Bme18I GGWCC 2 cut(s) 228, 273
BmgT120I GGNCC 4 cut(s) 51, 52, 228, 273
BmiI GGNNCC 4 cut(s) 53, 235, 275, 390
BmrFI CCNGG 4 cut(s) 98, 201, 223, 279
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 2 cut(s) 252, 339
BpmI CTGGAG 1 cut(s) 318
BpuMI CCSGG 4 cut(s) 98, 201, 223, 279
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 169, 277
BsaWI WCCGGW 2 cut(s) 230, 487
BsaXI ACNNNNNCTCC 4 cut(s) 273, 285, 303, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 129, 282
BseAI TCCGGA 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 169, 277
BseGI GGATG 2 cut(s) 96, 457
BseLI CCNNNNNNNGG 3 cut(s) 128, 129, 282
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 2 cut(s) 55, 206
BseX3I CGGCCG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 29, 169
BseYI CCCAGC 2 cut(s) 48, 140
Bsh1236I CGCG 3 cut(s) 162, 171, 338
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 5, 53, 168
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 2 cut(s) 35, 111
BsiSI CCGG 7 cut(s) 97, 200, 222, 231, 279, 306, 488
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 128, 129, 282
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 3 cut(s) 5, 53, 168
Bso31I GGTCTC 1 cut(s) 30
Bsp120I GGGCCC 1 cut(s) 51
Bsp1286I GDGCHC 4 cut(s) 35, 55, 111, 206
Bsp13I TCCGGA 1 cut(s) 487
BspACI CCGC 7 cut(s) 162, 165, 169, 171, 338, 380, 449
BspANI GGCC 3 cut(s) 5, 53, 168
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 3 cut(s) 162, 171, 338
BspLI GGNNCC 4 cut(s) 53, 235, 275, 390
BspMAI CTGCAG 2 cut(s) 19, 159
BspMI ACCTGC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 169, 277
Bst4CI ACNGT 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 412, 446
BstC8I GCNNGC 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 169
BstEII GGTNACC 1 cut(s) 328
BstF5I GGATG 2 cut(s) 96, 457
BstFNI CGCG 3 cut(s) 162, 171, 338
BstHHI GCGC 2 cut(s) 96, 162
BstMAI GTCTC 1 cut(s) 30
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 5 cut(s) 168, 302, 388, 412, 446
BstPI GGTNACC 1 cut(s) 328
BstSCI CCNGG 4 cut(s) 96, 199, 221, 277
BstSFI CTRYAG 3 cut(s) 15, 38, 155
BstSLI GKGCMC 2 cut(s) 55, 206
BstUI CGCG 3 cut(s) 162, 171, 338
BstV1I GCAGC 2 cut(s) 29, 169
BstV2I GAAGAC 2 cut(s) 252, 339
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 3 cut(s) 5, 53, 168
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 96, 457
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 35
CciNI GCGGCCGC 1 cut(s) 166
CfoI GCGC 2 cut(s) 96, 162
Cfr13I GGNCC 4 cut(s) 51, 52, 228, 273
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 504
CviAII CATG 1 cut(s) 21
CviQI GTAC 1 cut(s) 504
EaeI YGGCCR 2 cut(s) 3, 166
EagI CGGCCG 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 33
EclXI CGGCCG 1 cut(s) 166
Eco24I GRGCYC 2 cut(s) 35, 55
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 228, 273
Eco52I CGGCCG 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 328
EcoT38I GRGCYC 2 cut(s) 35, 55
FaeI CATG 1 cut(s) 24
FaiI YATR 1 cut(s) 22
FaqI GGGAC 1 cut(s) 259
FatI CATG 1 cut(s) 20
Fnu4HI GCNGC 6 cut(s) 18, 158, 163, 166, 169, 339
FokI GGATG 2 cut(s) 103, 464
FriOI GRGCYC 2 cut(s) 35, 55
Fsp4HI GCNGC 6 cut(s) 18, 158, 163, 166, 169, 339
GlaI GCGC 2 cut(s) 95, 161
GluI GCNGC 6 cut(s) 18, 158, 163, 166, 169, 339
GsaI CCCAGC 2 cut(s) 52, 144
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 3 cut(s) 5, 53, 168
HapII CCGG 7 cut(s) 97, 200, 222, 231, 279, 306, 488
HhaI GCGC 2 cut(s) 96, 162
Hin1II CATG 1 cut(s) 24
Hin6I GCGC 2 cut(s) 94, 160
HinP1I GCGC 2 cut(s) 94, 160
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 2 cut(s) 191, 313
HpaI GTTAAC 1 cut(s) 396
HpaII CCGG 7 cut(s) 97, 200, 222, 231, 279, 306, 488
HphI GGTGA 2 cut(s) 97, 433
Hpy166II GTNNAC 2 cut(s) 68, 396
Hpy188I TCNGA 2 cut(s) 30, 238
Hpy188III TCNNGA 3 cut(s) 122, 351, 488
Hpy8I GTNNAC 2 cut(s) 68, 396
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 5 cut(s) 17, 63, 157, 323, 440
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 302, 388, 412, 446
Hsp92II CATG 1 cut(s) 24
HspAI GCGC 2 cut(s) 94, 160
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 396
KspI CCGCGG 1 cut(s) 172
LmnI GCTCC 3 cut(s) 124, 293, 388
Lsp1109I GCAGC 2 cut(s) 29, 169
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 10, 328
MboII GAAGA 6 cut(s) 257, 271, 274, 277, 339, 503
MfeI CAATTG 1 cut(s) 58
MhlI GDGCHC 4 cut(s) 35, 55, 111, 206
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 58, 78
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 6 cut(s) 65, 81, 126, 275, 403, 436
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 7 cut(s) 97, 200, 222, 231, 279, 306, 488
MspR9I CCNGG 4 cut(s) 98, 201, 223, 279
MunI CAATTG 1 cut(s) 58
MvnI CGCG 3 cut(s) 162, 171, 338
MwoI GCNNNNNNNGC 5 cut(s) 168, 302, 388, 412, 446
NciI CCSGG 4 cut(s) 98, 201, 223, 279
NlaIII CATG 1 cut(s) 24
NlaIV GGNNCC 4 cut(s) 53, 235, 275, 390
NmuCI GTSAC 1 cut(s) 10
NotI GCGGCCGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 6 cut(s) 19, 159, 164, 167, 170, 340
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 35
PspEI GGTNACC 1 cut(s) 328
PspFI CCCAGC 2 cut(s) 48, 140
PspN4I GGNNCC 4 cut(s) 53, 235, 275, 390
PspOMI GGGCCC 1 cut(s) 51
PspPI GGNCC 4 cut(s) 51, 52, 228, 273
PstI CTGCAG 2 cut(s) 19, 159
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 35
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 6 cut(s) 18, 158, 163, 166, 169, 339
Sau96I GGNCC 4 cut(s) 51, 52, 228, 273
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 4 cut(s) 98, 201, 223, 279
SduI GDGCHC 4 cut(s) 35, 55, 111, 206
SetI ASST 7 cut(s) 35, 45, 298, 335, 376, 414, 505
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 3 cut(s) 15, 38, 155
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 2 cut(s) 228, 273
Sse9I AATT 2 cut(s) 58, 78
SsiI CCGC 7 cut(s) 162, 165, 169, 171, 338, 380, 449
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 4 cut(s) 96, 199, 221, 277
TaaI ACNGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 103, 189
TasI AATT 2 cut(s) 58, 78
TauI GCSGC 4 cut(s) 165, 168, 171, 341
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 17, 157
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 228, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.