Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8359937.1

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Reverse (-)

149 .. 1034

Gene Structure 886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8359937.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggctgaagaagcaaagcgggaattggaaaggttgagggctgagagagaggcagataatattgccctgatgaaggaacgtgcagctgttgaatcagaaatggaagttctagcaaggttgaggcatgaggtggaggagcaattagagaacctaatgagtaacaaagtagagatatcatttgaaaaggaaagagttagcaaacttaggaaagatgcagaaaatgaaagccaggagattgctcgtttgcagtatgatctagaggttgaacggaaagccttgtccatggccagggcttgggctgaagatgaggcaaaaagagcaagagaacaagctaaatccctggaggaggctagagatcgctgggagaggcatggcatcaaagtagttgttgacaatgacctccgtgaagaggcattgggtgaagctacttgggttgatgctggcaagttgtcagttgaaggaactgttagcagggctgagaatttgatggacaaactcaaggcaatggcagtggatataaaaggaagaagcagagatgtaattgataaaatcattcaaaagatagccttgtttgtatcaagtttgagggaatgggtttccaaagctggagaaagggctggagaacttaaagacacagccatctcaaaggtcaacagatcagcacaagagttgcagcaaagcaccttggagtacagcttggtagtcaaagaaggtgctaagcgcgtagcggatgattgtagggaaggagtggagaaactcacccaaaggttcaagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

259

Amino Acids

29.7

Weight (kDa)

5.43

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccII	CGCG	1 cut(s)	723
AciI	CCGC	2 cut(s)	19, 728
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	27, 321
AfaI	GTAC	1 cut(s)	692
AfiI	CCNNNNNNNGG	5 cut(s)	73, 288, 294, 346, 409
AgsI	TTSAA	6 cut(s)	92, 182, 266, 458, 557, 772
AjnI	CCWGG	3 cut(s)	228, 287, 339
AluBI	AGCT	5 cut(s)	86, 332, 425, 605, 696
AluI	AGCT	5 cut(s)	86, 332, 425, 605, 696
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	83, 673
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	723
AsuHPI	GGTGA	2 cut(s)	431, 751
BalI	TGGCCA	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	95, 685
BccI	CCATC	2 cut(s)	481, 647
BciT130I	CCWGG	3 cut(s)	230, 289, 341
BfaI	CTAG	3 cut(s)	110, 257, 351
BisI	GCNGC	2 cut(s)	84, 674
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	2 cut(s)	85, 675
Bme1390I	CCNGG	3 cut(s)	230, 289, 341
BmrFI	CCNGG	3 cut(s)	230, 289, 341
BmsI	GCATC	3 cut(s)	202, 384, 427
BpmI	CTGGAG	3 cut(s)	362, 627, 639
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	282, 288, 339, 684
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 288, 294, 346, 409
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	3 cut(s)	230, 289, 341
BseDI	CCNNGG	4 cut(s)	282, 288, 339, 684
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	5 cut(s)	73, 288, 294, 346, 409
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	33, 468
BseRI	GAGGAG	2 cut(s)	149, 359
BseXI	GCAGC	2 cut(s)	95, 685
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	723
BshFI	GGCC	1 cut(s)	287
BslI	CCNNNNNNNGG	5 cut(s)	73, 288, 294, 346, 409
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	253, 355, 656
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	19, 728
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	34, 469
BspFNI	CGCG	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	510
BssECI	CCNNGG	4 cut(s)	282, 288, 339, 684
BssMI	GATC	3 cut(s)	253, 355, 656
BssT1I	CCWWGG	2 cut(s)	282, 684
Bst2UI	CCWGG	3 cut(s)	230, 289, 341
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	4 cut(s)	42, 203, 477, 717
BstDSI	CCRYGG	1 cut(s)	282
BstENI	CCTNNNNNAGG	2 cut(s)	71, 344
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	3 cut(s)	256, 358, 659
BstMBI	GATC	3 cut(s)	253, 355, 656
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 317
BstNI	CCWGG	3 cut(s)	230, 289, 341
BstSCI	CCNGG	3 cut(s)	228, 287, 339
BstUI	CGCG	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	95, 685
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	736
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	691
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	4 cut(s)	125, 283, 371, 777
CviQI	GTAC	1 cut(s)	691
DdeI	CTNAG	4 cut(s)	42, 203, 477, 717
DpnI	GATC	3 cut(s)	255, 357, 658
DpnII	GATC	3 cut(s)	253, 355, 656
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	282, 684
Eco32I	GATATC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	27, 321
EcoNI	CCTNNNNNAGG	2 cut(s)	71, 344
EcoRII	CCWGG	3 cut(s)	228, 287, 339
EcoRV	GATATC	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	282, 684
ErhI	CCWWGG	2 cut(s)	282, 684
FaeI	CATG	4 cut(s)	128, 286, 374, 780
FaiI	YATR	6 cut(s)	126, 252, 284, 372, 518, 778
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FatI	CATG	4 cut(s)	124, 282, 370, 776
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	84, 674
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	2 cut(s)	84, 674
FspBI	CTAG	3 cut(s)	110, 257, 351
GlaI	GCGC	1 cut(s)	722
GluI	GCNGC	2 cut(s)	84, 674
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	3 cut(s)	362, 627, 639
HaeIII	GGCC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	4 cut(s)	128, 286, 374, 780
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	2 cut(s)	391, 652
HindII	GTYRAC	2 cut(s)	391, 652
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	2 cut(s)	431, 751
Hpy166II	GTNNAC	2 cut(s)	391, 652
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	257, 772
Hpy8I	GTNNAC	2 cut(s)	391, 652
HpyAV	CCTTC	4 cut(s)	67, 452, 704, 737
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	83, 215, 247, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 317
HpyF3I	CTNAG	4 cut(s)	42, 203, 477, 717
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	4 cut(s)	128, 286, 374, 780
HspAI	GCGC	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	253, 355, 656
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	2 cut(s)	95, 685
LweI	GCATC	3 cut(s)	202, 384, 427
MaeI	CTAG	3 cut(s)	110, 257, 351
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	255, 357, 658
MboI	GATC	3 cut(s)	253, 355, 656
MboII	GAAGA	4 cut(s)	20, 314, 419, 537
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	4 cut(s)	23, 140, 481, 540
MluNI	TGGCCA	1 cut(s)	287
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	3 cut(s)	230, 289, 341
MvaI	CCWGG	3 cut(s)	230, 289, 341
MvnI	CGCG	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	11, 317
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	253, 355, 656
NlaIII	CATG	4 cut(s)	128, 286, 374, 780
PfeI	GAWTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	85, 675
Psp6I	CCWGG	3 cut(s)	228, 287, 339
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	3 cut(s)	228, 287, 339
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	692
RsaNI	GTAC	1 cut(s)	691
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	2 cut(s)	84, 674
Sau3AI	GATC	3 cut(s)	253, 355, 656
ScrFI	CCNGG	3 cut(s)	230, 289, 341
SfaNI	GCATC	3 cut(s)	202, 384, 427
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	23, 140, 481, 540
SsiI	CCGC	2 cut(s)	19, 728
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	3 cut(s)	110, 257, 351
StyD4I	CCNGG	3 cut(s)	228, 287, 339
StyI	CCWWGG	2 cut(s)	282, 684
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	82
TasI	AATT	4 cut(s)	23, 140, 481, 540
TatI	WGTACW	1 cut(s)	690
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	2 cut(s)	83, 673
TspDTI	ATGAA	2 cut(s)	86, 237
TspGWI	ACGGA	2 cut(s)	283, 392
TspRI	CASTG	1 cut(s)	516
Van91I	CCANNNNNTGG	1 cut(s)	294
XagI	CCTNNNNNAGG	2 cut(s)	71, 344
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	256
XspI	CTAG	3 cut(s)	110, 257, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.