Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003381

Physical Location & Seq

Genomic Coordinates Forward (+)

62968945 .. 62974054

Gene Structure 5110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG412600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2439 bp

ATGGCCAATGTGACTGCAGCATGGTCTCCGAGCTCGCTACAGCTTCGGTGGGCTCTCAATTGCAGTAAACCGTCGCCAATTCTGGTGAGGATGCGCCGGGTTCGAGTGCTCTGTGTTGCTCCGGACACAGGGAGGACTGCTGGGAATAATGGACTGCAGCGCGGCAGCCGCAATGGGAGTTCGTGGGTCGAGTCCAAGCCGGGCACTGCCGATGGCTTGTCCGGGTGGTCCGGTTCCGATGATGAAGACGACTCGCGGAAGAAGAAATGGTCCGGAGGGCTTGTGGGAGCTGGAGTAGCCGGAGTGATTCTTGTTGCAGGGGTTACCTTCGCGGCATTGTCTTCAGGAAAAAAAGCGAATACAATACCTAAACCGCAGATGGAGCCGTTAACAACAGAGCAGGAGGTGCTATTGGTGAATGATGATGTCAATGCAGAGGGTGTGGATGAGCAGAGCAACATGAAGCAAGATGGTGGTGGTCCGGAAGAAAAGGCAGGTACTAACAAGGATTATTCTTCATCTCGAGAAATTGATGTGTCTCCTGGTTTATATAGAGTTGGTAATGATTATGATCTAGGGGAGTTGTCAGTCGAAGAGTTTGAGTATGCATCCGGTGGTGGTTCTGAGGCCATCAACAGCGCTTCCATTCAAGAAGATTTGCAACATGAATCAACTTCTGATGACAAGTCAGTCGAGCCTGAAACGTTAACAAGGCAGTTTGATCTGCCTGAATCTGATCATGGCAATGATTCTTTTGTTGCCTCTGGGCTTGAGGATTCTGATAGTAGCCTCGCTGTAGGTACAGGAGATTTGACTTCTGAACTTAAAGAGAACCCGGTTAGTGTCGAACCAATCAAGTTGCCAGTCTCTGACGCTATGAATTCAAACCTTAGCATTGAACCCCAGGATGAAATTCCTGGGGCAAGTGAAAATCAAACTGCCACTTCTGAGTCTTCTACTGTTATTGCACATGAACACAATGAATCTATAGCTGTGGATGTTTCAGTTTCTTCGGAATCAAACATTCTTTTAGAACCTCAAGTATTGTCTAAAGATAACCTAGGAGTTGTAGCCTCGTCTTCAACCAAAGAAAACCTTGACCCAAGTGAAACAGTACAGGTCTTGGCTGAGGGAAATAGTTCCTCCCTGGAAGTGCATACCATAACTGAAAGTGGGTCATCTGCAACATCTGTGTCAGAACAGGCCTATCAAAATGCAAATGAACAATACACATATTATTCTAATGATACAAATACAAGCAAATCACAATTACCAACTCCTCGGAATTCCTTCTCTTCTGCTGGTATACCTGCTCCAACTGTGGTTTCTGCAGCTGTACAGGTGCTTCCTGGAAAGGTTTTGGTACCTGCAGTTGTTGATCAGGTTCAGGGGCAGGCATTAGCAGCTCTACAAGTGTTGAAGGTCGTAGAGGCTGATGTTCAACCTGGTGATTTGTGTACACGTCGTGAATATGCTCGATGGTTGGTATCTGCAAGTAGTGCTCTTTCGAGGAACTCAGTATCTAAAGTATATCCTGCAATGTATATTGAGAATATTACTGAGCTTGCATTTGATGACGTTACACCTGAAGACCCTGATTTCCCTTCCATCCAAGGTTTGGCTGAATCTGGACTTATCTCAAGTAAGCTCTCAAGACGTGATATGGATTCTTCGTTGGATGAGGACGAGGGTCCATTGTACTTCTCTCCTGAAAGCGCTCTATCACGTCAAGATCTTGTAAGCTGGAAGATGGCCCTAGAGAAAAGACATCTTCCAGAAGCTGACAGGAAGGTCCTCCACCAAATCTCAGGATTCATTGATACTGATAAGATACACCCAGATGCATGTCCTGCACTTGTTGCTGATCTATCTGGAGAACAGGGTATTATTGCTCTTGCATTTGGTTACACTAGACTTTTTCAGCCAAATAAGCCGGTAACAAAAGCCCAGGCTGCTATTGCTCTTGCAACTGGTGAGTATGCTGATGTAGTTAGCGAGGAGCTTGCACGCATTGAAGCAGAAGCTATGGCAGAAAAGGCTGTTGATGCACATAATGCTTTAGTAGCCCAAGTTGAAAAGGATGTGAATGCAAGTTTTGAGAAGGATCTTTCCCTTGAGAGGGAAAAAATTGATGCTGTGGAGAGAATGGCTGAAGAAGCAAAGCGGGAATTGGAAAGGTTGAGGGCTGAGAGAGAGGCAGATAATATTGCCCTGATGAAGGAACGTGCAGCTGTTGAATCAGAAATGGAAGTTCTAGCTAGGTTGAGGCATGAGGTGGAGGAGCAATTAGAGAACCTAATGAGTAACAAAGTAGAGATATCATTTGAAAAGGAAAGAGTTAGCAAACTTAGGAAAGATGCAGAAAATGAAAGCCAGGAGATTGCTCGTTTGCAGTATGATCTAGAGGTTGAACGGAAAGCCTTGTCCATGGCCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

812

Amino Acids

87.69

Weight (kDa)

4.52

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23890 AT5G23890 AT5G52410 AT5G52410 AT5G52410
fragaria_vesca	FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760 FvH4_7g29760
malus_domestica	MD01G1204600.v1.1 MD07G1273100.v1.1
prunus_persica	Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1 Prupe.2G296700_v2.0.a1
pyrus_communis	pycom01g21410 pycom07g24950 pycom07g24960
rosa_chinensis	RchiOBHm_Chr1g0377741
rosa_laevigata	RLG00000026502
rosa_multiflora	Rmu_co7992088.1_g000001 Rmu_co8121168.1_g000001 Rmu_co8359937.1_g000001 Rmu_sc0005758.1_g000001 Rmu_sc0040285.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281100
rosa_rugosa	Rorug01G0404500 Rorug01G0404500 Rorug01G0404500
rosa_samantha	Rh1AG427700 Rh1BG381600 Rh1CG395500 Rh1DG412600
rosa_wichuraiana	Rw1G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	689, 1790
Acc36I	ACCTGC	3 cut(s)	485, 1318, 1375
Acc65I	GGTACC	1 cut(s)	1363
AccB1I	GGYRCC	1 cut(s)	1363
AccB7I	CCANNNNNTGG	1 cut(s)	1618
AccI	GTMKAC	1 cut(s)	1306
AccII	CGCG	3 cut(s)	162, 256, 332
AccIII	TCCGGA	3 cut(s)	121, 272, 481
AciI	CCGC	6 cut(s)	162, 169, 256, 332, 374, 2164
AclI	AACGTT	1 cut(s)	704
AclWI	GGATC	1 cut(s)	2112
AcoI	YGGCCR	2 cut(s)	3, 2430
AcsI	RAATTY	3 cut(s)	880, 912, 1285
AcuI	CTGAAG	3 cut(s)	327, 1608, 2172
AdeI	CACNNNGTG	1 cut(s)	1466
AfaI	GTAC	7 cut(s)	499, 802, 1116, 1338, 1365, 1459, 1700
AfeI	AGCGCT	2 cut(s)	640, 1717
AfiI	CCNNNNNNNGG	6 cut(s)	128, 1618, 2118, 2119, 2218, 2433
AflIII	ACRYGT	1 cut(s)	1460
AjiI	CACGTC	3 cut(s)	1463, 1658, 1727
AjnI	CCWGG	9 cut(s)	541, 903, 916, 1146, 1348, 1444, 1947, 2373, 2432
AjuI	GAANNNNNNNTTGG	2 cut(s)	1309, 1341
Alw21I	GWGCWC	3 cut(s)	35, 111, 1504
Alw26I	GTCTC	3 cut(s)	30, 543, 871
AlwI	GGATC	1 cut(s)	2112
AlwNI	CAGNNNCTG	2 cut(s)	869, 1781
Ama87I	CYCGRG	1 cut(s)	522
Aor13HI	TCCGGA	3 cut(s)	121, 272, 481
Aor51HI	AGCGCT	2 cut(s)	640, 1717
AoxI	GGCC	5 cut(s)	3, 627, 1203, 1752, 2430
ApeKI	GCWGC	7 cut(s)	17, 157, 165, 1331, 1403, 1952, 2228
ApoI	RAATTY	3 cut(s)	880, 912, 1285
Asp700I	GAANNNNTTC	2 cut(s)	1138, 1289
Asp718I	GGTACC	1 cut(s)	1363
AspA2I	CCTAGG	1 cut(s)	1060
AspLEI	GCGC	4 cut(s)	96, 162, 641, 1718
AspS9I	GGNCC	6 cut(s)	228, 270, 479, 1691, 1753, 1792
AsuC2I	CCSGG	4 cut(s)	98, 201, 223, 836
AsuHPI	GGTGA	4 cut(s)	97, 427, 1460, 1985
AvaI	CYCGRG	1 cut(s)	522
AvaII	GGWCC	5 cut(s)	228, 270, 479, 1691, 1792
AvrII	CCTAGG	1 cut(s)	1060
BaeGI	GKGCMC	1 cut(s)	206
BalI	TGGCCA	2 cut(s)	5, 2432
BanI	GGYRCC	1 cut(s)	1363
BanII	GRGCYC	2 cut(s)	35, 55
BarI	GAAGNNNNNNTAC	2 cut(s)	1329, 1361
BbsI	GAAGAC	5 cut(s)	252, 333, 945, 1071, 1596
Bbv12I	GWGCWC	3 cut(s)	35, 111, 1504
BbvCI	CCTCAGC	1 cut(s)	1128
BbvI	GCAGC	7 cut(s)	29, 169, 177, 1343, 1415, 1939, 2240
BccI	CCATC	7 cut(s)	206, 373, 464, 638, 1473, 1616, 1744
BceAI	ACGGC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	1985, 2019
BciT130I	CCWGG	9 cut(s)	543, 905, 918, 1148, 1350, 1446, 1949, 2375, 2434
BclI	TGATCA	2 cut(s)	736, 1378
BcnI	CCSGG	4 cut(s)	98, 201, 223, 836
BcoDI	GTCTC	3 cut(s)	30, 543, 871
BfaI	CTAG	7 cut(s)	575, 1061, 1757, 1911, 2255, 2259, 2402
BfmI	CTRYAG	7 cut(s)	15, 38, 155, 795, 987, 1329, 1368
BfoI	RGCGCY	2 cut(s)	642, 1719
BfuAI	ACCTGC	3 cut(s)	485, 1318, 1375
BglII	AGATCT	1 cut(s)	1732
BlnI	CCTAGG	1 cut(s)	1060
Bme18I	GGWCC	5 cut(s)	228, 270, 479, 1691, 1792
BmeT110I	CYCGRG	1 cut(s)	522
BmgBI	CACGTC	3 cut(s)	1463, 1658, 1727
BmgT120I	GGNCC	6 cut(s)	228, 270, 479, 1691, 1753, 1792
BmiI	GGNNCC	4 cut(s)	235, 384, 1365, 1692
BmsI	GCATC	6 cut(s)	81, 617, 1831, 2035, 2122, 2347
BoxI	GACNNNNGTC	1 cut(s)	1689
BpiI	GAAGAC	5 cut(s)	252, 333, 945, 1071, 1596
BpmI	CTGGAG	2 cut(s)	312, 1893
Bpu10I	CCTNAGC	2 cut(s)	890, 1128
BpuEI	CTTGAG	5 cut(s)	791, 1023, 1624, 1636, 2135
BpuMI	CCSGG	4 cut(s)	98, 201, 223, 836
BsaBI	GATNNNNATC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	8 cut(s)	903, 917, 1060, 1146, 1280, 1612, 1947, 2427
BsaWI	WCCGGW	5 cut(s)	121, 230, 272, 481, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 279, 297, 309
Bsc4I	CCNNNNNNNGG	6 cut(s)	128, 1618, 2118, 2119, 2218, 2433
Bse118I	RCCGGY	1 cut(s)	1933
Bse1I	ACTGG	2 cut(s)	863, 1975
Bse3DI	GCAATG	3 cut(s)	178, 751, 1545
Bse8I	GATNNNNATC	1 cut(s)	570
BseAI	TCCGGA	3 cut(s)	121, 272, 481
BseBI	CCWGG	9 cut(s)	543, 905, 918, 1148, 1350, 1446, 1949, 2375, 2434
BseDI	CCNNGG	8 cut(s)	903, 917, 1060, 1146, 1280, 1612, 1947, 2427
BseGI	GGATG	8 cut(s)	96, 451, 608, 913, 1003, 1608, 1684, 2086
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	6 cut(s)	128, 1618, 2118, 2119, 2218, 2433
BseMI	GCAATG	3 cut(s)	178, 751, 1545
BseMII	CTCAG	7 cut(s)	615, 939, 1119, 1530, 1551, 1821, 2178
BseNI	ACTGG	2 cut(s)	863, 1975
BseRI	GAGGAG	3 cut(s)	1269, 2012, 2294
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	7 cut(s)	29, 169, 177, 1343, 1415, 1939, 2240
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	2 cut(s)	1836, 2247
Bsh1236I	CGCG	3 cut(s)	162, 256, 332
BshFI	GGCC	5 cut(s)	5, 629, 1205, 1754, 2432
BshNI	GGYRCC	1 cut(s)	1363
BsiHKAI	GWGCWC	3 cut(s)	35, 111, 1504
BsiHKCI	CYCGRG	1 cut(s)	522
BslI	CCNNNNNNNGG	6 cut(s)	128, 1618, 2118, 2119, 2218, 2433
BsmAI	GTCTC	3 cut(s)	30, 543, 871
BsmI	GAATGC	1 cut(s)	2092
BsnI	GGCC	5 cut(s)	5, 629, 1205, 1754, 2432
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	522
Bsp1286I	GDGCHC	5 cut(s)	35, 55, 111, 206, 1504
Bsp13I	TCCGGA	3 cut(s)	121, 272, 481
Bsp1407I	TGTACA	2 cut(s)	1336, 1457
Bsp143I	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
Bsp19I	CCATGG	1 cut(s)	2427
BspACI	CCGC	6 cut(s)	162, 169, 256, 332, 374, 2164
BspANI	GGCC	5 cut(s)	5, 629, 1205, 1754, 2432
BspCNI	CTCAG	7 cut(s)	616, 940, 1120, 1529, 1552, 1820, 2179
BspEI	TCCGGA	3 cut(s)	121, 272, 481
BspFNI	CGCG	3 cut(s)	162, 256, 332
BspLI	GGNNCC	4 cut(s)	235, 384, 1365, 1692
BspMAI	CTGCAG	4 cut(s)	19, 159, 1333, 1372
BspMI	ACCTGC	3 cut(s)	485, 1318, 1375
BspPI	GGATC	1 cut(s)	2112
BspT107I	GGYRCC	1 cut(s)	1363
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	3 cut(s)	178, 751, 1545
BsrFI	RCCGGY	1 cut(s)	1933
BsrGI	TGTACA	2 cut(s)	1336, 1457
BsrI	ACTGG	2 cut(s)	863, 1975
BssAI	RCCGGY	1 cut(s)	1933
BssECI	CCNNGG	8 cut(s)	903, 917, 1060, 1146, 1280, 1612, 1947, 2427
BssMI	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
BssNAI	GTATAC	1 cut(s)	1307
BssT1I	CCWWGG	3 cut(s)	1060, 1612, 2427
Bst1107I	GTATAC	1 cut(s)	1307
Bst2UI	CCWGG	9 cut(s)	543, 905, 918, 1148, 1350, 1446, 1949, 2375, 2434
Bst4CI	ACNGT	4 cut(s)	72, 961, 1114, 1321
Bst6I	CTCTTC	2 cut(s)	588, 1300
BstAPI	GCANNNNNTGC	5 cut(s)	406, 1499, 1850, 1859, 2054
BstAUI	TGTACA	2 cut(s)	1336, 1457
BstC8I	GCNNGC	5 cut(s)	35, 1395, 1566, 2004, 2008
BstDEI	CTNAG	9 cut(s)	624, 890, 948, 1128, 1516, 1560, 1807, 2187, 2348
BstDSI	CCRYGG	1 cut(s)	2427
BstEII	GGTNACC	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	2216
BstF5I	GGATG	8 cut(s)	96, 451, 608, 913, 1003, 1608, 1684, 2086
BstFNI	CGCG	3 cut(s)	162, 256, 332
BstH2I	RGCGCY	2 cut(s)	642, 1719
BstHHI	GCGC	4 cut(s)	96, 162, 641, 1718
BstKTI	GATC	8 cut(s)	574, 724, 739, 1381, 1735, 1867, 2107, 2401
BstMAI	GTCTC	3 cut(s)	30, 543, 871
BstMBI	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
BstNI	CCWGG	9 cut(s)	543, 905, 918, 1148, 1350, 1446, 1949, 2375, 2434
BstNSI	RCATGY	1 cut(s)	1848
BstPAI	GACNNNNGTC	1 cut(s)	1689
BstPI	GGTNACC	1 cut(s)	322
BstSFI	CTRYAG	7 cut(s)	15, 38, 155, 795, 987, 1329, 1368
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	3 cut(s)	162, 256, 332
BstV1I	GCAGC	7 cut(s)	29, 169, 177, 1343, 1415, 1939, 2240
BstV2I	GAAGAC	5 cut(s)	252, 333, 945, 1071, 1596
BstX2I	RGATCY	2 cut(s)	1732, 2104
BstYI	RGATCY	2 cut(s)	1732, 2104
BstZ17I	GTATAC	1 cut(s)	1307
BsuRI	GGCC	5 cut(s)	5, 629, 1205, 1754, 2432
BtgI	CCRYGG	1 cut(s)	2427
BtrI	CACGTC	3 cut(s)	1463, 1658, 1727
BtsCI	GGATG	8 cut(s)	96, 451, 608, 913, 1003, 1608, 1684, 2086
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	3 cut(s)	485, 1318, 1375
Cac8I	GCNNGC	5 cut(s)	35, 1395, 1566, 2004, 2008
CaiI	CAGNNNCTG	2 cut(s)	869, 1781
CfoI	GCGC	4 cut(s)	96, 162, 641, 1718
Cfr10I	RCCGGY	1 cut(s)	1933
Cfr13I	GGNCC	6 cut(s)	228, 270, 479, 1691, 1753, 1792
CseI	GACGC	1 cut(s)	881
CsiI	ACCWGGT	1 cut(s)	1444
Csp6I	GTAC	7 cut(s)	498, 801, 1115, 1337, 1364, 1458, 1699
CviAII	CATG	8 cut(s)	21, 460, 665, 740, 971, 1845, 2270, 2428
CviQI	GTAC	7 cut(s)	498, 801, 1115, 1337, 1364, 1458, 1699
DdeI	CTNAG	9 cut(s)	624, 890, 948, 1128, 1516, 1560, 1807, 2187, 2348
DpnI	GATC	8 cut(s)	573, 723, 738, 1380, 1734, 1866, 2106, 2400
DpnII	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
DraIII	CACNNNGTG	1 cut(s)	1466
DrdI	GACNNNNNNGTC	2 cut(s)	689, 1790
DseDI	GACNNNNNNGTC	2 cut(s)	689, 1790
EaeI	YGGCCR	2 cut(s)	3, 2430
Eam1104I	CTCTTC	2 cut(s)	588, 1300
EarI	CTCTTC	2 cut(s)	588, 1300
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	3 cut(s)	1060, 1612, 2427
Eco147I	AGGCCT	1 cut(s)	1205
Eco24I	GRGCYC	2 cut(s)	35, 55
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	2319
Eco47I	GGWCC	5 cut(s)	228, 270, 479, 1691, 1792
Eco47III	AGCGCT	2 cut(s)	640, 1717
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	3 cut(s)	327, 1608, 2172
Eco88I	CYCGRG	1 cut(s)	522
Eco91I	GGTNACC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	33
EcoNI	CCTNNNNNAGG	1 cut(s)	2216
EcoO109I	RGGNCCY	1 cut(s)	1792
EcoO65I	GGTNACC	1 cut(s)	322
EcoRI	GAATTC	2 cut(s)	880, 1285
EcoRII	CCWGG	9 cut(s)	541, 903, 916, 1146, 1348, 1444, 1947, 2373, 2432
EcoRV	GATATC	1 cut(s)	2319
EcoT14I	CCWWGG	3 cut(s)	1060, 1612, 2427
EcoT22I	ATGCAT	2 cut(s)	610, 1846
EcoT38I	GRGCYC	2 cut(s)	35, 55
ErhI	CCWWGG	3 cut(s)	1060, 1612, 2427
FaeI	CATG	8 cut(s)	24, 463, 668, 743, 974, 1848, 2273, 2431
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FatI	CATG	8 cut(s)	20, 459, 664, 739, 970, 1844, 2269, 2427
FauI	CCCGC	1 cut(s)	2157
FbaI	TGATCA	2 cut(s)	736, 1378
FblI	GTMKAC	1 cut(s)	1306
FokI	GGATG	8 cut(s)	103, 458, 595, 920, 1010, 1595, 1691, 2093
FriOI	GRGCYC	2 cut(s)	35, 55
FspBI	CTAG	7 cut(s)	575, 1061, 1757, 1911, 2255, 2259, 2402
GlaI	GCGC	4 cut(s)	95, 161, 640, 1717
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	2 cut(s)	312, 1893
HaeII	RGCGCY	2 cut(s)	642, 1719
HaeIII	GGCC	5 cut(s)	5, 629, 1205, 1754, 2432
HgaI	GACGC	1 cut(s)	881
HhaI	GCGC	4 cut(s)	96, 162, 641, 1718
Hin1II	CATG	8 cut(s)	24, 463, 668, 743, 974, 1848, 2273, 2431
Hin6I	GCGC	4 cut(s)	94, 160, 639, 1716
HinP1I	GCGC	4 cut(s)	94, 160, 639, 1716
HincII	GTYRAC	2 cut(s)	390, 708
HindII	GTYRAC	2 cut(s)	390, 708
HpaI	GTTAAC	2 cut(s)	390, 708
HphI	GGTGA	4 cut(s)	97, 427, 1460, 1985
Hpy166II	GTNNAC	6 cut(s)	68, 390, 708, 1307, 1458, 1460
Hpy8I	GTNNAC	6 cut(s)	68, 390, 708, 1307, 1458, 1460
Hpy99I	CGWCG	2 cut(s)	76, 1467
HpyAV	CCTTC	7 cut(s)	337, 1300, 1414, 1614, 1783, 2095, 2212
HpyCH4III	ACNGT	4 cut(s)	72, 961, 1114, 1321
HpyCH4IV	ACGT	6 cut(s)	704, 1462, 1578, 1657, 1726, 2224
HpyF3I	CTNAG	9 cut(s)	624, 890, 948, 1128, 1516, 1560, 1807, 2187, 2348
HpySE526I	ACGT	6 cut(s)	704, 1462, 1578, 1657, 1726, 2224
Hsp92II	CATG	8 cut(s)	24, 463, 668, 743, 974, 1848, 2273, 2431
HspAI	GCGC	4 cut(s)	94, 160, 639, 1716
Kpn2I	TCCGGA	3 cut(s)	121, 272, 481
KpnI	GGTACC	1 cut(s)	1367
Ksp22I	TGATCA	2 cut(s)	736, 1378
KspAI	GTTAAC	2 cut(s)	390, 708
Kzo9I	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
LmnI	GCTCC	6 cut(s)	124, 287, 382, 1318, 1999, 2281
Lsp1109I	GCAGC	7 cut(s)	29, 169, 177, 1343, 1415, 1939, 2240
LweI	GCATC	6 cut(s)	81, 617, 1831, 2035, 2122, 2347
MabI	ACCWGGT	1 cut(s)	1444
MaeI	CTAG	7 cut(s)	575, 1061, 1757, 1911, 2255, 2259, 2402
MaeII	ACGT	6 cut(s)	704, 1462, 1578, 1657, 1726, 2224
MaeIII	GTNAC	6 cut(s)	10, 322, 1579, 1904, 1936, 2303
MalI	GATC	8 cut(s)	573, 723, 738, 1380, 1734, 1866, 2106, 2400
MboI	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	2 cut(s)	1732, 2104
MhlI	GDGCHC	5 cut(s)	35, 55, 111, 206, 1504
MlsI	TGGCCA	2 cut(s)	5, 2432
MluNI	TGGCCA	2 cut(s)	5, 2432
MlyI	GAGTC	3 cut(s)	200, 245, 959
MmeI	TCCRAC	2 cut(s)	1340, 1656
Mox20I	TGGCCA	2 cut(s)	5, 2432
Mph1103I	ATGCAT	2 cut(s)	610, 1846
MroI	TCCGGA	3 cut(s)	121, 272, 481
MroXI	GAANNNNTTC	2 cut(s)	1138, 1289
MscI	TGGCCA	2 cut(s)	5, 2432
MseI	TTAA	3 cut(s)	389, 707, 825
MslI	CAYNNNNRTG	2 cut(s)	744, 1839
Msp20I	TGGCCA	2 cut(s)	5, 2432
MspA1I	CMGCKG	2 cut(s)	1334, 2231
MunI	CAATTG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	2092
MvaI	CCWGG	9 cut(s)	543, 905, 918, 1148, 1350, 1446, 1949, 2375, 2434
MvnI	CGCG	3 cut(s)	162, 256, 332
NciI	CCSGG	4 cut(s)	98, 201, 223, 836
NcoI	CCATGG	1 cut(s)	2427
NdeII	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
NlaIII	CATG	8 cut(s)	24, 463, 668, 743, 974, 1848, 2273, 2431
NlaIV	GGNNCC	4 cut(s)	235, 384, 1365, 1692
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	2 cut(s)	610, 1846
NspI	RCATGY	1 cut(s)	1848
PaeR7I	CTCGAG	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	1205
PctI	GAATGC	1 cut(s)	2092
PdmI	GAANNNNTTC	2 cut(s)	1138, 1289
PflMI	CCANNNNNTGG	1 cut(s)	1618
PfoI	TCCNGGA	1 cut(s)	1348
PleI	GAGTC	3 cut(s)	199, 245, 958
PpsI	GAGTC	3 cut(s)	199, 245, 958
PpuMI	RGGWCCY	1 cut(s)	1792
PshAI	GACNNNNGTC	1 cut(s)	1689
Psp124BI	GAGCTC	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	1792
Psp6I	CCWGG	9 cut(s)	541, 903, 916, 1146, 1348, 1444, 1947, 2373, 2432
PspEI	GGTNACC	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	9 cut(s)	541, 903, 916, 1146, 1348, 1444, 1947, 2373, 2432
PspN4I	GGNNCC	4 cut(s)	235, 384, 1365, 1692
PspPI	GGNCC	6 cut(s)	228, 270, 479, 1691, 1753, 1792
PspPPI	RGGWCCY	1 cut(s)	1792
PstI	CTGCAG	4 cut(s)	19, 159, 1333, 1372
PstNI	CAGNNNCTG	2 cut(s)	869, 1781
PsuI	RGATCY	2 cut(s)	1732, 2104
PvuII	CAGCTG	2 cut(s)	1334, 2231
RsaI	GTAC	7 cut(s)	499, 802, 1116, 1338, 1365, 1459, 1700
RsaNI	GTAC	7 cut(s)	498, 801, 1115, 1337, 1364, 1458, 1699
RseI	CAYNNNNRTG	2 cut(s)	744, 1839
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	389, 707, 825
Sau3AI	GATC	8 cut(s)	571, 721, 736, 1378, 1732, 1864, 2104, 2398
Sau96I	GGNCC	6 cut(s)	228, 270, 479, 1691, 1753, 1792
SchI	GAGTC	3 cut(s)	200, 245, 959
SduI	GDGCHC	5 cut(s)	35, 55, 111, 206, 1504
SexAI	ACCWGGT	1 cut(s)	1444
SfaNI	GCATC	6 cut(s)	81, 617, 1831, 2035, 2122, 2347
SfcI	CTRYAG	7 cut(s)	15, 38, 155, 795, 987, 1329, 1368
Sfr274I	CTCGAG	1 cut(s)	522
SinI	GGWCC	5 cut(s)	228, 270, 479, 1691, 1792
SlaI	CTCGAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	744, 1839
SmlI	CTYRAG	6 cut(s)	522, 770, 1038, 1639, 1651, 2114
SmoI	CTYRAG	6 cut(s)	522, 770, 1038, 1639, 1651, 2114
SseBI	AGGCCT	1 cut(s)	1205
SsiI	CCGC	6 cut(s)	162, 169, 256, 332, 374, 2164
SspI	AATATT	2 cut(s)	1555, 2206
SspMI	CTAG	7 cut(s)	575, 1061, 1757, 1911, 2255, 2259, 2402
SstI	GAGCTC	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	1205
StyI	CCWWGG	3 cut(s)	1060, 1612, 2427
TaaI	ACNGT	4 cut(s)	72, 961, 1114, 1321
TaiI	ACGT	6 cut(s)	707, 1465, 1581, 1660, 1729, 2227
TaqI	TCGA	8 cut(s)	103, 189, 523, 591, 693, 846, 1477, 1508
TatI	WGTACW	4 cut(s)	1114, 1336, 1457, 1698
TauI	GCSGC	3 cut(s)	165, 171, 335
Tru1I	TTAA	3 cut(s)	389, 707, 825
Tru9I	TTAA	3 cut(s)	389, 707, 825
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	7 cut(s)	17, 157, 165, 1331, 1403, 1952, 2228
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	2428
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	1618
VpaK11BI	GGWCC	5 cut(s)	228, 270, 479, 1691, 1792
XagI	CCTNNNNNAGG	1 cut(s)	2216
XapI	RAATTY	3 cut(s)	880, 912, 1285
XbaI	TCTAGA	1 cut(s)	2401
XceI	RCATGY	1 cut(s)	1848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1615
XhoI	CTCGAG	1 cut(s)	522
XmaJI	CCTAGG	1 cut(s)	1060
XmiI	GTMKAC	1 cut(s)	1306
XmnI	GAANNNNTTC	2 cut(s)	1138, 1289
XspI	CTAG	7 cut(s)	575, 1061, 1757, 1911, 2255, 2259, 2402
Zsp2I	ATGCAT	2 cut(s)	610, 1846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.