AT5G55140

Ribosomal protein L30 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005111
Physical Location & Seq
Forward (+)
22380996 .. 22382194
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55140.1

Sequence Viewer

Length: 330 bp
ATGAGTGGTTTTAGAGCTTTCAAAGCACAAGTGCCTATTGAATGGAGCCAGAGCTTGTACATAACCTTAGTAAGAGGTCTCCCTGGAACAAGGAAGCTTCACAGACGAACACTTGAAGCTATGGGACTTCGTAGATGTCATCGTACTGTTTTGCATTCAAACAATTCATCCATTAGGGGAATGATTGATCAGGTTAAAAGGATGGTTGTTGTTGAAACAGAAGAAATGTACAATGCTCGTAAAGAAGCAGAAGCCAACCACAAAGCTTTGCGCCCGCCTCTCGTTGTCAGTCATTCGAGTCCTGCAACAGATTCATCCAACATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

109

Amino Acids

12.36

Weight (kDa)

10.59

Isoelectric Point (pI)

69.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 20 - 69 4.4e-16 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 275
AfaI GTAC 3 cut(s) 59, 145, 230
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 5 cut(s) 22, 41, 116, 159, 215
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 5 cut(s) 17, 54, 97, 119, 266
AluI AGCT 5 cut(s) 17, 54, 97, 119, 266
Alw26I GTCTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 273
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 167, 207, 314
BslFI GGGAC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 83
Bsp1407I TGTACA 2 cut(s) 57, 228
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 83
BsrGI TGTACA 2 cut(s) 57, 228
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 148
BstAUI TGTACA 2 cut(s) 57, 228
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 67
BstF5I GGATG 3 cut(s) 167, 207, 314
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 82
BtsCI GGATG 3 cut(s) 167, 207, 314
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 273
Csp6I GTAC 3 cut(s) 58, 144, 229
CviAII CATG 1 cut(s) 322
CviJI RGCY 7 cut(s) 17, 48, 54, 97, 119, 254, 266
CviKI_1 RGCY 7 cut(s) 17, 48, 54, 97, 119, 254, 266
CviQI GTAC 3 cut(s) 58, 144, 229
DdeI CTNAG 1 cut(s) 67
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 325
FaiI YATR 3 cut(s) 62, 122, 323
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 321
FauI CCCGC 1 cut(s) 282
FbaI TGATCA 1 cut(s) 187
FokI GGATG 3 cut(s) 154, 214, 301
GlaI GCGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 273
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 95, 264
HinfI GANTC 2 cut(s) 298, 311
Hpy188III TCNNGA 1 cut(s) 327
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 154, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 62, 69, 96, 176, 315
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 233
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 2 cut(s) 68, 288
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 154
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 187
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 47
NspI RCATGY 1 cut(s) 325
PciI ACATGT 1 cut(s) 321
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 311
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 47
RsaI GTAC 3 cut(s) 59, 145, 230
RsaNI GTAC 3 cut(s) 58, 144, 229
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 1 cut(s) 187
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 84
SetI ASST 8 cut(s) 19, 56, 68, 79, 99, 121, 195, 268
Sse9I AATT 1 cut(s) 163
SsiI CCGC 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 296
TasI AATT 1 cut(s) 163
TatI WGTACW 2 cut(s) 57, 228
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TspDTI ATGAA 2 cut(s) 156, 303
XceI RCATGY 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.