RchiOBHm_Chr2g0158361

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005111
Physical Location & Seq
Reverse (-)
74683435 .. 74685314
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52705

Sequence Viewer

Length: 327 bp
ATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGTATATAACTCTGGTGAGGGGAATCCCAGGAACCAGGAGGCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGTATAAGGCCCGCAAACAAAAGGATGCAGACCACCGAGCTCCTCGCCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

108

Amino Acids

12.44

Weight (kDa)

11.63

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 20 - 69 1e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AciI CCGC 1 cut(s) 238
AclWI GGATC 1 cut(s) 178
AfaI GTAC 1 cut(s) 109
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 2 cut(s) 82, 89
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 178
AoxI GGCC 1 cut(s) 234
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 82, 284
AsuII TTCGAA 1 cut(s) 130
BanII GRGCYC 2 cut(s) 50, 268
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 268
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 84, 91
BcoDI GTCTC 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 84, 91
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 47, 88
BmrFI CCNGG 2 cut(s) 84, 91
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 82
BseBI CCWGG 2 cut(s) 84, 91
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 258
BshFI GGCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 50, 268
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 47, 88
BspPI GGATC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 84, 91
Bst4CI ACNGT 2 cut(s) 148, 172
Bst6I CTCTTC 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 238
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 14, 103
BstNI CCWGG 2 cut(s) 84, 91
BstSCI CCNGG 2 cut(s) 82, 89
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 236
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 42, 151
CviJI RGCY 5 cut(s) 17, 48, 97, 236, 266
CviKI_1 RGCY 5 cut(s) 17, 48, 97, 236, 266
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DraI TTTAAA 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 2 cut(s) 50, 268
Eco53kI GAGCTC 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 82, 89
EcoT38I GRGCYC 2 cut(s) 50, 268
FaeI CATG 2 cut(s) 45, 154
FaiI YATR 7 cut(s) 43, 60, 62, 152, 231, 287, 325
FatI CATG 2 cut(s) 41, 150
FauI CCCGC 1 cut(s) 245
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 2 cut(s) 50, 268
HaeIII GGCC 1 cut(s) 236
Hin1II CATG 2 cut(s) 45, 154
HinfI GANTC 1 cut(s) 78
HphI GGTGA 2 cut(s) 82, 284
Hpy188III TCNNGA 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 148, 172
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 41, 138, 254, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 103
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 45, 154
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 45, 271
LpnPI CCDG 8 cut(s) 53, 69, 76, 88, 96, 103, 176, 312
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 124
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 119, 233, 309, 312
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 50, 268
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 5 cut(s) 66, 87, 109, 279, 305
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 84, 91
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 84, 91
MwoI GCNNNNNNNGC 2 cut(s) 14, 103
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 45, 154
NlaIV GGNNCC 2 cut(s) 47, 88
NspV TTCGAA 1 cut(s) 130
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 78
PsiI TTATAA 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 82, 89
PspGI CCWGG 2 cut(s) 82, 89
PspN4I GGNNCC 2 cut(s) 47, 88
PspPI GGNCC 1 cut(s) 235
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 84, 91
SduI GDGCHC 2 cut(s) 50, 268
SetI ASST 4 cut(s) 127, 195, 268, 297
SfaNI GCATC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 130
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 238
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 82, 89
TaaI ACNGT 2 cut(s) 148, 172
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 36
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 17, 312
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.