FvH4_6g42460

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005111
Physical Location & Seq
Reverse (-)
33097650 .. 33099128
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42460.t1

Sequence Viewer

Length: 447 bp
ATGAGCCCAAAGGCGAGGCTCAGAAACACTGCGACATCCTTCACCCCTCATTCTCTAGTTTCTTCACTCAAACAAGCCTCGAGCCCTCGCCGCCGTTATCACAGGTTTGAAGGAGAAGAAATGAATGCGTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGTATATAACTTTGGTGAGGGGAATCCCAGGAACCAGGAGGCTTCACAGGCGCACTTTAGAGGCACTACGTCTTCGCAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGTATAAAGCCCGAAAACAAAAGGATGCAGACCACCGAGCTCCTCGTCCCCCGTTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

149

Amino Acids

17.04

Weight (kDa)

11.66

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 60 - 109 2.1e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 298
AgsI TTSAA 2 cut(s) 110, 133
AjnI CCWGG 2 cut(s) 202, 209
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 3 cut(s) 34, 202, 404
AvaI CYCGRG 1 cut(s) 79
BanII GRGCYC 4 cut(s) 8, 86, 170, 388
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 1 cut(s) 270
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 2 cut(s) 204, 211
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 204, 211
BmeT110I CYCGRG 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 167, 208
BmrFI CCNGG 2 cut(s) 204, 211
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 202
BseBI CCWGG 2 cut(s) 204, 211
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 35, 376
BseMII CTCAG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 378
BsmI GAATGC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 4 cut(s) 8, 86, 170, 388
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 167, 208
BspPI GGATC 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 204, 211
Bst4CI ACNGT 2 cut(s) 268, 292
Bst6I CTCTTC 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 35, 376
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 90, 134, 223
BstNI CCWGG 2 cut(s) 204, 211
BstSCI CCNGG 2 cut(s) 202, 209
BstV2I GAAGAC 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 35, 376
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CfoI GCGC 1 cut(s) 228
CviAII CATG 2 cut(s) 162, 271
CviJI RGCY 9 cut(s) 6, 19, 77, 84, 137, 168, 217, 356, 386
CviKI_1 RGCY 9 cut(s) 6, 19, 77, 84, 137, 168, 217, 356, 386
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
DraI TTTAAA 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 386
Eco24I GRGCYC 4 cut(s) 8, 86, 170, 388
Eco53kI GAGCTC 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 202, 209
EcoT38I GRGCYC 4 cut(s) 8, 86, 170, 388
FaeI CATG 2 cut(s) 165, 274
FaiI YATR 7 cut(s) 163, 180, 182, 272, 351, 407, 445
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 161, 270
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 2 cut(s) 22, 383
FriOI GRGCYC 4 cut(s) 8, 86, 170, 388
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 165, 274
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 1 cut(s) 198
HphI GGTGA 3 cut(s) 34, 202, 404
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 316
HpyAV CCTTC 2 cut(s) 49, 104
HpyCH4III ACNGT 2 cut(s) 268, 292
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 161, 258, 374, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 134, 223
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 2 cut(s) 165, 274
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 2 cut(s) 165, 391
LpnPI CCDG 8 cut(s) 88, 189, 196, 208, 216, 223, 296, 432
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 244
MalI GATC 1 cut(s) 305
MboI GATC 1 cut(s) 303
MboII GAAGA 6 cut(s) 54, 128, 239, 353, 429, 432
MfeI CAATTG 1 cut(s) 156
MhlI GDGCHC 4 cut(s) 8, 86, 170, 388
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 9 cut(s) 9, 57, 88, 96, 186, 207, 229, 399, 425
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 204, 211
MunI CAATTG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 2 cut(s) 204, 211
MwoI GCNNNNNNNGC 3 cut(s) 90, 134, 223
NdeII GATC 1 cut(s) 303
NlaIII CATG 2 cut(s) 165, 274
NlaIV GGNNCC 2 cut(s) 167, 208
PaeR7I CTCGAG 1 cut(s) 79
PctI GAATGC 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 92
PsiI TTATAA 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 202, 209
PspGI CCWGG 2 cut(s) 202, 209
PspN4I GGNNCC 2 cut(s) 167, 208
PspXI VCTCGAGB 1 cut(s) 79
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 1 cut(s) 303
ScrFI CCNGG 2 cut(s) 204, 211
SduI GDGCHC 4 cut(s) 8, 86, 170, 388
SetI ASST 5 cut(s) 107, 247, 315, 388, 417
SfaNI GCATC 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 79
SlaI CTCGAG 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 202, 209
TaaI ACNGT 2 cut(s) 268, 292
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 80
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 137, 432
TspRI CASTG 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.