Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001826.1

Orthogroup ID

OG0005111

Physical Location & Seq

Genomic Coordinates Reverse (-)

57372 .. 58777

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001826.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgtgtgtggagtggcggttttggcttttgaagcggagggttcgttatgcaaagcattgcggatccgccaagtcagggtcaggtttgaacatgaatgctttcaaggcttttaaaaccaatgttccaattgcatggagccctaatctgtatataactctggtgaggggttcccaggaactaggaggcttcacaggcgtcaagagattggttgtggttgagacagaagagatgcataaggcccgcaaacaaaaggaggcagaccaccgagctcctcatcccccattgattataaatcacctccctgcttctgcaaatggttcttcttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30

Protein Analysis

109

Amino Acids

12.21

Weight (kDa)

10.24

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55140
fragaria_vesca	FvH4_6g04610 FvH4_6g04610 FvH4_6g42460
malus_domestica	MD09G1112900.v1.1
prunus_persica	Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1
pyrus_communis	pycom09g03720 pycom17g09730
rosa_chinensis	RchiOBHm_Chr2g0158361 RchiOBHm_Chr4g0419171
rosa_laevigata	RLG00000021080
rosa_multiflora	Rmu_sc0001826.1_g000015 Rmu_sc0005921.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091460
rosa_rugosa	Rorug02G0467400 Rorug02G0467400
rosa_samantha	Rh2AG533500 Rh2BG547300 Rh2CG517600 Rh2DG556800 Rh4CG231900 Rh4DG218300
rosa_wichuraiana	Rw0G013320 Rw2G044210 Rw4G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AciI	CCGC	5 cut(s)	16, 34, 60, 66, 241
AclWI	GGATC	2 cut(s)	57, 70
AcyI	GRCGYC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	3 cut(s)	31, 88, 103
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	57, 70
AoxI	GGCC	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	172, 287
BamHI	GGATCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	140, 271
Bbv12I	GWGCWC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	64, 137, 169
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 32, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	140, 271
Bsp143I	GATC	1 cut(s)	62
BspACI	CCGC	5 cut(s)	16, 34, 60, 66, 241
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	3 cut(s)	64, 137, 169
BspPI	GGATC	2 cut(s)	57, 70
BsrDI	GCAATG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	62
BssNI	GRCGYC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	173
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	1 cut(s)	65
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 31, 104, 192
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	184
CviAII	CATG	2 cut(s)	91, 132
CviJI	RGCY	6 cut(s)	25, 107, 138, 186, 239, 269
CviKI_1	RGCY	6 cut(s)	25, 107, 138, 186, 239, 269
DpnI	GATC	1 cut(s)	64
DpnII	GATC	1 cut(s)	62
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	140, 271
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	140, 271
FaeI	CATG	2 cut(s)	94, 135
FaiI	YATR	8 cut(s)	48, 92, 133, 150, 152, 234, 290, 328
FatI	CATG	2 cut(s)	90, 131
FauI	CCCGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	2 cut(s)	140, 271
FspBI	CTAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	94, 135
HphI	GGTGA	2 cut(s)	172, 287
Hpy188III	TCNNGA	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	50, 131, 232, 311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 31, 104, 192
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	94, 135
Kzo9I	GATC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	135, 274
LpnPI	CCDG	7 cut(s)	60, 66, 143, 158, 177, 185, 315
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	179
MalI	GATC	1 cut(s)	64
MboI	GATC	1 cut(s)	62
MboII	GAAGA	3 cut(s)	236, 312, 315
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	140, 271
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	6 cut(s)	30, 156, 176, 247, 282, 308
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	22, 31, 104, 192
NdeII	GATC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	94, 135
NlaIV	GGNNCC	3 cut(s)	64, 137, 169
NsiI	ATGCAT	1 cut(s)	234
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	64, 137, 169
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	62
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	140, 271
SetI	ASST	3 cut(s)	85, 271, 300
SfaNI	GCATC	1 cut(s)	219
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	5 cut(s)	16, 34, 60, 66, 241
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	171
TasI	AATT	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TspDTI	ATGAA	2 cut(s)	107, 315
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.