Rh4DG218300

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0005111
Physical Location & Seq
Reverse (-)
41889488 .. 41890893
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG218300.1

Sequence Viewer

Length: 324 bp
ATGTGTGTGGAGTGGCGGTTTTGGCTTTTGAAGCGGAGGGTTCGTTATGCAAAGCATTGCGGATCCGCCAAGTCAGGGTCAGGAACTAGGAGGCTTCACAGGCGTACTTTAGAGGCATTGCGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGCATAAGGCCCGCAAACAAAAGGAGGCAGACCACCGAGCTCCTCATCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

107

Amino Acids

12.51

Weight (kDa)

11.56

Isoelectric Point (pI)

62.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 24 - 68 1.1e-14 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AciI CCGC 5 cut(s) 16, 34, 60, 66, 235
AclWI GGATC 3 cut(s) 57, 70, 175
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 3 cut(s) 57, 70, 175
AoxI GGCC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 281
AsuII TTCGAA 1 cut(s) 127
BamHI GGATCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 265
BccI CCATC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 127
BsaXI ACNNNNNCTCC 3 cut(s) 28, 32, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse3DI GCAATG 2 cut(s) 55, 116
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 2 cut(s) 55, 116
BseRI GAGGAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 62, 180
BspACI CCGC 5 cut(s) 16, 34, 60, 66, 235
BspANI GGCC 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 3 cut(s) 57, 70, 175
BspT104I TTCGAA 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 55, 116
BssMI GATC 2 cut(s) 62, 180
Bst4CI ACNGT 2 cut(s) 145, 169
Bst6I CTCTTC 1 cut(s) 213
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 65, 183
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 62, 180
BstMWI GCNNNNNNNGC 3 cut(s) 22, 31, 100
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 25, 94, 233, 263
CviKI_1 RGCY 4 cut(s) 25, 94, 233, 263
CviQI GTAC 1 cut(s) 105
DpnI GATC 2 cut(s) 64, 182
DpnII GATC 2 cut(s) 62, 180
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 1 cut(s) 151
FaiI YATR 5 cut(s) 48, 149, 228, 284, 322
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 242
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 265
FspBI CTAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 233
HgaI GACGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 151
HphI GGTGA 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 81, 193
HpyCH4III ACNGT 2 cut(s) 145, 169
HpyCH4V TGCA 4 cut(s) 50, 135, 226, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 31, 100
Hsp92II CATG 1 cut(s) 151
Kzo9I GATC 2 cut(s) 62, 180
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 60, 66, 85, 173, 309
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 87
MalI GATC 2 cut(s) 64, 182
MboI GATC 2 cut(s) 62, 180
MboII GAAGA 4 cut(s) 116, 230, 306, 309
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 208
MnlI CCTC 6 cut(s) 30, 84, 106, 241, 276, 302
Mph1103I ATGCAT 1 cut(s) 228
MwoI GCNNNNNNNGC 3 cut(s) 22, 31, 100
NdeII GATC 2 cut(s) 62, 180
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 228
NspV TTCGAA 1 cut(s) 127
PsiI TTATAA 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 232
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SacI GAGCTC 1 cut(s) 265
Sau3AI GATC 2 cut(s) 62, 180
Sau96I GGNCC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 265
SetI ASST 3 cut(s) 192, 265, 294
SfaNI GCATC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 127
SsiI CCGC 5 cut(s) 16, 34, 60, 66, 235
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 1 cut(s) 265
TaaI ACNGT 2 cut(s) 145, 169
TaqI TCGA 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 309
XspI CTAG 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.