Rw2G044210

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005111
Physical Location & Seq
Reverse (-)
70905322 .. 70906781
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044210.1

Sequence Viewer

Length: 360 bp
ATGAGTGGGTCAGGTTTGAACATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGTATATAACTCTGGTTAGGGGAATCCCAGGAACCAGGAGGCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGTATAAGGCCCGCAAACAAAAGGATGCAGACCACCGAGCTCCTCGCCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGATTTTCTTCATAGCCTATGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

119

Amino Acids

13.7

Weight (kDa)

11.32

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 27 - 76 1.3e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AciI CCGC 1 cut(s) 259
AclWI GGATC 1 cut(s) 199
AfaI GTAC 1 cut(s) 130
AgsI TTSAA 2 cut(s) 19, 34
AjnI CCWGG 2 cut(s) 103, 110
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 305
AsuII TTCGAA 1 cut(s) 151
BanII GRGCYC 2 cut(s) 71, 289
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 289
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 2 cut(s) 105, 112
BcoDI GTCTC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 105, 112
BmgT120I GGNCC 1 cut(s) 256
BmiI GGNNCC 2 cut(s) 68, 109
BmrFI CCNGG 2 cut(s) 105, 112
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 105, 112
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 1 cut(s) 257
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 71, 289
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 257
BspLI GGNNCC 2 cut(s) 68, 109
BspPI GGATC 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 105, 112
Bst4CI ACNGT 2 cut(s) 169, 193
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 35, 124
BstNI CCWGG 2 cut(s) 105, 112
BstSCI CCNGG 2 cut(s) 103, 110
BstV2I GAAGAC 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 129
CviAII CATG 3 cut(s) 22, 63, 172
CviJI RGCY 6 cut(s) 38, 69, 118, 257, 287, 348
CviKI_1 RGCY 6 cut(s) 38, 69, 118, 257, 287, 348
CviQI GTAC 1 cut(s) 129
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraI TTTAAA 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 2 cut(s) 71, 289
Eco53kI GAGCTC 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 103, 110
EcoT38I GRGCYC 2 cut(s) 71, 289
FaeI CATG 3 cut(s) 25, 66, 175
FaiI YATR 9 cut(s) 23, 64, 81, 83, 173, 252, 308, 345, 352
FatI CATG 3 cut(s) 21, 62, 171
FauI CCCGC 1 cut(s) 266
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 2 cut(s) 71, 289
HaeIII GGCC 1 cut(s) 257
Hin1II CATG 3 cut(s) 25, 66, 175
HinfI GANTC 1 cut(s) 99
HphI GGTGA 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 217
HpyCH4III ACNGT 2 cut(s) 169, 193
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 4 cut(s) 62, 159, 275, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 124
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 3 cut(s) 25, 66, 175
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 66, 292
LpnPI CCDG 8 cut(s) 74, 90, 97, 109, 117, 124, 197, 333
LweI GCATC 1 cut(s) 262
MaeII ACGT 1 cut(s) 145
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 3 cut(s) 140, 254, 332
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 71, 289
MluCI AATT 2 cut(s) 57, 355
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 4 cut(s) 108, 130, 300, 326
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 105, 112
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 2 cut(s) 105, 112
MwoI GCNNNNNNNGC 2 cut(s) 35, 124
NdeII GATC 1 cut(s) 204
NlaIII CATG 3 cut(s) 25, 66, 175
NlaIV GGNNCC 2 cut(s) 68, 109
NspV TTCGAA 1 cut(s) 151
PctI GAATGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 103, 110
PspGI CCWGG 2 cut(s) 103, 110
PspN4I GGNNCC 2 cut(s) 68, 109
PspPI GGNCC 1 cut(s) 256
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 105, 112
SduI GDGCHC 2 cut(s) 71, 289
SetI ASST 5 cut(s) 16, 148, 216, 289, 318
SfaNI GCATC 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 151
Sse9I AATT 2 cut(s) 57, 355
SsiI CCGC 1 cut(s) 259
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 103, 110
TaaI ACNGT 2 cut(s) 169, 193
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 151
TasI AATT 2 cut(s) 57, 355
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 38, 332
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.