RLG00000021080

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005111
Physical Location & Seq
Reverse (-)
71759895 .. 71763341
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021080

Sequence Viewer

Length: 468 bp
ATGAATGATTGTGGAATGTGGACAGATCATGTGCCTCCAAACCCAAAACCCAGAGAAGCATTGGGCGAGACCTCCCCAAACCCAAATCACTGTTCGAGCTTCTTCCACTGCCTTCGTCGAGACCTCCCCAACTGTTTGAACATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGTATATAACTCTGGTGAGGGGTATCCCAGGAACCAGGAGGCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGTATAAGGCCCGCAAACAAAAGGATGCAGACCACCGAGCTCCTCGCCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

10.51

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 67 - 116 2.3e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AciI CCGC 1 cut(s) 379
AclWI GGATC 1 cut(s) 319
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 2 cut(s) 139, 154
AjnI CCWGG 2 cut(s) 223, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 2 cut(s) 99, 407
AluI AGCT 2 cut(s) 99, 407
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 3 cut(s) 62, 114, 350
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 223, 425
AsuII TTCGAA 1 cut(s) 271
BanII GRGCYC 2 cut(s) 191, 409
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 409
BccI CCATC 1 cut(s) 291
BciT130I CCWGG 2 cut(s) 225, 232
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 62, 114, 350
BfuI GTATCC 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 225, 232
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 188, 229
BmrFI CCNGG 2 cut(s) 225, 232
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 271
BsaI GGTCTC 2 cut(s) 62, 114
BsaJI CCNNGG 1 cut(s) 223
BseBI CCWGG 2 cut(s) 225, 232
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 399
BshFI GGCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 409
BsmAI GTCTC 3 cut(s) 62, 114, 350
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 377
Bso31I GGTCTC 2 cut(s) 62, 114
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 191, 409
Bsp143I GATC 2 cut(s) 25, 324
BspACI CCGC 1 cut(s) 379
BspANI GGCC 1 cut(s) 377
BspLI GGNNCC 2 cut(s) 188, 229
BspPI GGATC 1 cut(s) 319
BspT104I TTCGAA 1 cut(s) 271
BspTNI GGTCTC 2 cut(s) 62, 114
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 25, 324
Bst2UI CCWGG 2 cut(s) 225, 232
Bst4CI ACNGT 4 cut(s) 92, 134, 289, 313
Bst6I CTCTTC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 379
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 2 cut(s) 28, 327
BstMAI GTCTC 3 cut(s) 62, 114, 350
BstMBI GATC 2 cut(s) 25, 324
BstMWI GCNNNNNNNGC 2 cut(s) 155, 244
BstNI CCWGG 2 cut(s) 225, 232
BstSCI CCNGG 2 cut(s) 223, 230
BstV2I GAAGAC 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 183
BsuI GTATCC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 377
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 88, 106
Cac8I GCNNGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 249
CviAII CATG 4 cut(s) 29, 142, 183, 292
CviJI RGCY 6 cut(s) 99, 158, 189, 238, 377, 407
CviKI_1 RGCY 6 cut(s) 99, 158, 189, 238, 377, 407
CviQI GTAC 1 cut(s) 249
DpnI GATC 2 cut(s) 27, 326
DpnII GATC 2 cut(s) 25, 324
DraI TTTAAA 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 407
Eco24I GRGCYC 2 cut(s) 191, 409
Eco31I GGTCTC 2 cut(s) 62, 114
Eco53kI GAGCTC 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 223, 230
EcoT38I GRGCYC 2 cut(s) 191, 409
FaeI CATG 4 cut(s) 32, 145, 186, 295
FaiI YATR 9 cut(s) 30, 143, 184, 201, 203, 293, 372, 428, 466
FatI CATG 4 cut(s) 28, 141, 182, 291
FauI CCCGC 1 cut(s) 386
FokI GGATG 1 cut(s) 404
FriOI GRGCYC 2 cut(s) 191, 409
HaeIII GGCC 1 cut(s) 377
Hin1II CATG 4 cut(s) 32, 145, 186, 295
HphI GGTGA 2 cut(s) 223, 425
Hpy166II GTNNAC 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 119, 337
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 4 cut(s) 92, 134, 289, 313
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 182, 279, 395, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 244
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 4 cut(s) 32, 145, 186, 295
Kzo9I GATC 2 cut(s) 25, 324
LmnI GCTCC 2 cut(s) 186, 412
LpnPI CCDG 9 cut(s) 64, 194, 210, 217, 229, 237, 244, 317, 453
LweI GCATC 1 cut(s) 382
MaeII ACGT 1 cut(s) 265
MalI GATC 2 cut(s) 27, 326
MboI GATC 2 cut(s) 25, 324
MboII GAAGA 5 cut(s) 94, 260, 374, 450, 453
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 2 cut(s) 191, 409
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 8 cut(s) 45, 82, 134, 207, 228, 250, 420, 446
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 1 cut(s) 162
MspR9I CCNGG 2 cut(s) 225, 232
MunI CAATTG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 2 cut(s) 225, 232
MwoI GCNNNNNNNGC 2 cut(s) 155, 244
NdeII GATC 2 cut(s) 25, 324
NlaIII CATG 4 cut(s) 32, 145, 186, 295
NlaIV GGNNCC 2 cut(s) 188, 229
NspV TTCGAA 1 cut(s) 271
PctI GAATGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 149
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 2 cut(s) 223, 230
PspGI CCWGG 2 cut(s) 223, 230
PspN4I GGNNCC 2 cut(s) 188, 229
PspPI GGNCC 1 cut(s) 376
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 2 cut(s) 25, 324
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 225, 232
SduI GDGCHC 2 cut(s) 191, 409
SetI ASST 7 cut(s) 74, 101, 126, 268, 336, 409, 438
SfaNI GCATC 1 cut(s) 382
SfuI TTCGAA 1 cut(s) 271
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 379
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 223, 230
TaaI ACNGT 4 cut(s) 92, 134, 289, 313
TaiI ACGT 1 cut(s) 268
TaqI TCGA 3 cut(s) 95, 118, 271
TasI AATT 1 cut(s) 177
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 95, 113
TspDTI ATGAA 3 cut(s) 17, 158, 453
TspRI CASTG 2 cut(s) 95, 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.