Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005111

Physical Location & Seq

Genomic Coordinates Forward (+)

7414431 .. 7414859

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGTAGGTTGGAGAAGAAAATGAATGCTTTCAAGGCTTATAAAGCCAGTGTCCCAATTGCATGGAGCCCTAATCTGTATATAACTTTGGTGAGGGGAATCCCCGGAACTAGGAGACTTCACAGGCGTACTTTAGAGGCATTACGTCTCGGAAAGTGCAATCGAACTGTCATGCGATGGAATACTCCTACAGTTAGGGGAATGCTCCAACAGGTTAAGAGATTGGTCGTGATTGAGACAGAAGAGATGTATAAGGCCCGCAAGCAAAACTTGGAAAGTCACCGAGCTCTACGTCCCCCATTGGTCGTAAATCACCATCCTGGTTCTGCAAGTGGACCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30

Protein Analysis

115

Amino Acids

13.11

Weight (kDa)

11.34

Isoelectric Point (pI)

56.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55140
fragaria_vesca	FvH4_6g04610 FvH4_6g04610 FvH4_6g42460
malus_domestica	MD09G1112900.v1.1
prunus_persica	Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1 Prupe.3G211700_v2.0.a1
pyrus_communis	pycom09g03720 pycom17g09730
rosa_chinensis	RchiOBHm_Chr2g0158361 RchiOBHm_Chr4g0419171
rosa_laevigata	RLG00000021080
rosa_multiflora	Rmu_sc0001826.1_g000015 Rmu_sc0005921.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091460
rosa_rugosa	Rorug02G0467400 Rorug02G0467400
rosa_samantha	Rh2AG533500 Rh2BG547300 Rh2CG517600 Rh2DG556800 Rh4CG231900 Rh4DG218300
rosa_wichuraiana	Rw0G013320 Rw2G044210 Rw4G018720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AciI	CCGC	1 cut(s)	259
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	3 cut(s)	109, 152, 230
AoxI	GGCC	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	256, 335
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	103, 272, 305
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	71, 289
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	2 cut(s)	171, 324
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	3 cut(s)	109, 152, 230
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	105, 321
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	256, 335
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	2 cut(s)	105, 321
BpuMI	CCSGG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	38, 279
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	3 cut(s)	109, 152, 230
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	38, 279
BsmI	GAATGC	2 cut(s)	31, 207
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	71, 289
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	169, 193
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	259, 263
BstF5I	GGATG	1 cut(s)	316
BstMAI	GTCTC	3 cut(s)	109, 152, 230
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 44
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	103, 319
BstSFI	CTRYAG	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	259, 263
Cfr13I	GGNCC	2 cut(s)	256, 335
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	2 cut(s)	63, 172
CviJI	RGCY	5 cut(s)	38, 47, 69, 257, 287
CviKI_1	RGCY	5 cut(s)	38, 47, 69, 257, 287
CviQI	GTAC	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	2 cut(s)	71, 289
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	319
EcoT38I	GRGCYC	2 cut(s)	71, 289
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	66, 175
FaiI	YATR	6 cut(s)	42, 64, 81, 83, 173, 252
FalI	AAGNNNNNCTT	3 cut(s)	254, 286, 322
FaqI	GGGAC	2 cut(s)	38, 279
FatI	CATG	2 cut(s)	62, 171
FauI	CCCGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	2 cut(s)	71, 289
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	2 cut(s)	66, 175
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	103, 272, 305
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	169, 193
HpyCH4IV	ACGT	2 cut(s)	145, 292
HpyCH4V	TGCA	3 cut(s)	62, 159, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 44
HpySE526I	ACGT	2 cut(s)	145, 292
Hsp92II	CATG	2 cut(s)	66, 175
LmnI	GCTCC	2 cut(s)	66, 210
LpnPI	CCDG	6 cut(s)	61, 109, 118, 197, 306, 333
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	2 cut(s)	145, 292
MaeIII	GTNAC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	28, 254
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	2 cut(s)	71, 289
MluCI	AATT	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	2 cut(s)	87, 130
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	216, 343
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	105, 321
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	31, 207
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	35, 44
NciI	CCSGG	1 cut(s)	105
NlaIII	CATG	2 cut(s)	66, 175
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	278
PctI	GAATGC	2 cut(s)	31, 207
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	256, 335
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	216, 343
Sau96I	GGNCC	2 cut(s)	256, 335
ScrFI	CCNGG	2 cut(s)	105, 321
SduI	GDGCHC	2 cut(s)	71, 289
SetI	ASST	6 cut(s)	11, 148, 216, 289, 295, 340
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	103, 319
TaaI	ACNGT	2 cut(s)	169, 193
TaiI	ACGT	2 cut(s)	148, 295
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	2 cut(s)	216, 343
Tru9I	TTAA	2 cut(s)	216, 343
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.