Rh2BG547300

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005111
Physical Location & Seq
Reverse (-)
75685171 .. 75689033
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG547300.1

Sequence Viewer

Length: 585 bp
ATGGAAACATCGAATAAAATATCATCATTCATGAATGATAGTGGAATGCGGACAGATCATGAGTTTGGGCTAAGCGACCCACTGAAAGCCGTTGGAAGTTGGAACCTATTTACATCGAAAAAAAACCCAGTCGTCATTCGGCAACCACAAAAAAGGCGAGCAGCCTCGCACAGCAGCCTCCCTCCTTCTCTTTTCCGTCACCCAAAATCCAACTCTCTCGCATCTCTATCTGCGCCCCCAATTTCTCAAGGTTTGAACATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGTATATAACTCTGGTGAGGGGAATCCCAGGAACCAGGAGGCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGTATAAGGCCCGCAAACAAAAGGATGCAGACCACCGAGCTCCTCGCCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

194

Amino Acids

21.85

Weight (kDa)

11.49

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 106 - 155 3.6e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AciI CCGC 2 cut(s) 49, 496
AclWI GGATC 1 cut(s) 436
AfaI GTAC 1 cut(s) 367
AgsI TTSAA 2 cut(s) 256, 271
AjnI CCWGG 2 cut(s) 340, 347
AluBI AGCT 1 cut(s) 524
AluI AGCT 1 cut(s) 524
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 1 cut(s) 436
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 2 cut(s) 161, 174
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 493
AsuHPI GGTGA 3 cut(s) 191, 340, 542
AsuII TTCGAA 1 cut(s) 388
BanII GRGCYC 2 cut(s) 308, 526
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 2 cut(s) 173, 186
BccI CCATC 1 cut(s) 408
BceAI ACGGC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 342, 349
BcoDI GTCTC 1 cut(s) 467
BisI GCNGC 2 cut(s) 162, 175
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 2 cut(s) 163, 176
Bme1390I CCNGG 2 cut(s) 342, 349
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 3 cut(s) 104, 305, 346
BmrFI CCNGG 2 cut(s) 342, 349
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 230, 499
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 342, 349
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 514
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 516
BseXI GCAGC 2 cut(s) 173, 186
BshFI GGCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 467
BsmI GAATGC 2 cut(s) 51, 268
BsnI GGCC 1 cut(s) 494
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 308, 526
Bsp143I GATC 2 cut(s) 55, 441
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 2 cut(s) 49, 496
BspANI GGCC 1 cut(s) 494
BspHI TCATGA 2 cut(s) 30, 58
BspLI GGNNCC 3 cut(s) 104, 305, 346
BspPI GGATC 1 cut(s) 436
BspT104I TTCGAA 1 cut(s) 388
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 2 cut(s) 55, 441
Bst2UI CCWGG 2 cut(s) 342, 349
Bst4CI ACNGT 2 cut(s) 406, 430
Bst6I CTCTTC 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 159, 496
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 58, 444
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 2 cut(s) 55, 441
BstMWI GCNNNNNNNGC 2 cut(s) 272, 361
BstNI CCWGG 2 cut(s) 342, 349
BstSCI CCNGG 2 cut(s) 340, 347
BstV1I GCAGC 2 cut(s) 173, 186
BstV2I GAAGAC 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 300
BsuRI GGCC 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 427
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 159, 496
CciI TCATGA 2 cut(s) 30, 58
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 493
Csp6I GTAC 1 cut(s) 366
CviAII CATG 5 cut(s) 31, 59, 259, 300, 409
CviJI RGCY 9 cut(s) 70, 89, 164, 177, 275, 306, 355, 494, 524
CviKI_1 RGCY 9 cut(s) 70, 89, 164, 177, 275, 306, 355, 494, 524
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 71
DpnI GATC 2 cut(s) 57, 443
DpnII GATC 2 cut(s) 55, 441
DraI TTTAAA 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 524
Eco24I GRGCYC 2 cut(s) 308, 526
Eco53kI GAGCTC 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 524
EcoRII CCWGG 2 cut(s) 340, 347
EcoT38I GRGCYC 2 cut(s) 308, 526
FaeI CATG 5 cut(s) 34, 62, 262, 303, 412
FatI CATG 5 cut(s) 30, 58, 258, 299, 408
FauI CCCGC 1 cut(s) 503
Fnu4HI GCNGC 2 cut(s) 162, 175
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 2 cut(s) 308, 526
Fsp4HI GCNGC 2 cut(s) 162, 175
GlaI GCGC 1 cut(s) 234
GluI GCNGC 2 cut(s) 162, 175
HaeIII GGCC 1 cut(s) 494
HhaI GCGC 1 cut(s) 235
Hin1II CATG 5 cut(s) 34, 62, 262, 303, 412
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 1 cut(s) 336
HphI GGTGA 3 cut(s) 191, 340, 542
Hpy188III TCNNGA 3 cut(s) 31, 59, 454
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 406, 430
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 4 cut(s) 299, 396, 512, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 361
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 5 cut(s) 34, 62, 262, 303, 412
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 55, 441
LmnI GCTCC 2 cut(s) 303, 529
LpnPI CCDG 9 cut(s) 141, 311, 327, 334, 346, 354, 361, 434, 570
Lsp1109I GCAGC 2 cut(s) 173, 186
LweI GCATC 2 cut(s) 230, 499
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 57, 443
MboI GATC 2 cut(s) 55, 441
MboII GAAGA 4 cut(s) 377, 491, 567, 570
MfeI CAATTG 1 cut(s) 294
MhlI GDGCHC 2 cut(s) 308, 526
MluCI AATT 2 cut(s) 240, 294
MmeI TCCRAC 4 cut(s) 73, 80, 234, 469
MnlI CCTC 8 cut(s) 175, 188, 192, 324, 345, 367, 537, 563
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 342, 349
MunI CAATTG 1 cut(s) 294
Mva1269I GAATGC 2 cut(s) 51, 268
MvaI CCWGG 2 cut(s) 342, 349
MwoI GCNNNNNNNGC 2 cut(s) 272, 361
NdeII GATC 2 cut(s) 55, 441
NlaIII CATG 5 cut(s) 34, 62, 262, 303, 412
NlaIV GGNNCC 3 cut(s) 104, 305, 346
NmuCI GTSAC 1 cut(s) 197
NspV TTCGAA 1 cut(s) 388
PagI TCATGA 2 cut(s) 30, 58
PctI GAATGC 2 cut(s) 51, 268
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 2 cut(s) 163, 176
PsiI TTATAA 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 526
Psp6I CCWGG 2 cut(s) 340, 347
PspGI CCWGG 2 cut(s) 340, 347
PspN4I GGNNCC 3 cut(s) 104, 305, 346
PspPI GGNCC 1 cut(s) 493
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 2 cut(s) 162, 175
Sau3AI GATC 2 cut(s) 55, 441
Sau96I GGNCC 1 cut(s) 493
ScrFI CCNGG 2 cut(s) 342, 349
SduI GDGCHC 2 cut(s) 308, 526
SetI ASST 6 cut(s) 108, 253, 385, 453, 526, 555
SfaNI GCATC 2 cut(s) 230, 499
SfuI TTCGAA 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 2 cut(s) 240, 294
SsiI CCGC 2 cut(s) 49, 496
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 340, 347
TaaI ACNGT 2 cut(s) 406, 430
TaiI ACGT 1 cut(s) 385
TaqI TCGA 3 cut(s) 11, 116, 388
TasI AATT 2 cut(s) 240, 294
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 2 cut(s) 161, 174
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 4 cut(s) 19, 47, 275, 570
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.