pycom09g03720

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0005111
Physical Location & Seq
Forward (+)
2748120 .. 2748531
412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03720.1

Sequence Viewer

Length: 324 bp
ATGAATGCTTTCAAGGCTTATAAAGCCAGTGTCCCAATTGCATGGAGCCCTAATCTGTATATAACTTTGGTGAGGGGAATCCCGGGAACCAGGAGACTTCACAGGCGTACTTTAGAGGCATTACGTCTCGGAAAGTGCAACCGAACTGTCATGAGATGGAATACTCCTACAGTCAGGGGAATGCTCCAACAGGTTAAGAGATTGGTCGTAATTGAGACAGAAGAGATGTATAAAGCCCGCAAACAAAACTTGGAAAGCCACCGAGCTCTACGCCCCCCTTTGGTCATAAATCACCAACCTGCTTCTGCTAGTGGTTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

11.53

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 20 - 69 4.3e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 1 cut(s) 238
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 3 cut(s) 88, 131, 209
Ama87I CYCGRG 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 2 cut(s) 83, 84
AsuHPI GGTGA 2 cut(s) 82, 284
AvaI CYCGRG 1 cut(s) 82
BanII GRGCYC 2 cut(s) 50, 268
Bbv12I GWGCWC 1 cut(s) 268
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 2 cut(s) 83, 84
BcoDI GTCTC 3 cut(s) 88, 131, 209
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 307
Bme1390I CCNGG 3 cut(s) 83, 84, 91
BmeT110I CYCGRG 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 47, 88
BmrFI CCNGG 3 cut(s) 83, 84, 91
BpuMI CCSGG 2 cut(s) 83, 84
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 3 cut(s) 88, 131, 209
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 17
BsmI GAATGC 2 cut(s) 10, 186
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 50, 268
BspACI CCGC 1 cut(s) 238
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 47, 88
BspMI ACCTGC 1 cut(s) 307
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 148, 172
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 238
BstMAI GTCTC 3 cut(s) 88, 131, 209
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 81, 82, 89
BstSFI CTRYAG 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 238
CciI TCATGA 1 cut(s) 150
Cfr9I CCCGGG 1 cut(s) 82
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 42, 151
CviJI RGCY 6 cut(s) 17, 26, 48, 236, 258, 266
CviKI_1 RGCY 6 cut(s) 17, 26, 48, 236, 258, 266
CviQI GTAC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 2 cut(s) 50, 268
Eco53kI GAGCTC 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 82
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 89
EcoT38I GRGCYC 2 cut(s) 50, 268
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 2 cut(s) 45, 154
FaiI YATR 7 cut(s) 21, 43, 60, 62, 152, 231, 287
FaqI GGGAC 1 cut(s) 17
FatI CATG 2 cut(s) 41, 150
FauI CCCGC 1 cut(s) 245
FriOI GRGCYC 2 cut(s) 50, 268
FspBI CTAG 1 cut(s) 309
HapII CCGG 1 cut(s) 83
Hin1II CATG 2 cut(s) 45, 154
HinfI GANTC 1 cut(s) 78
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 82, 284
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 148, 172
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 41, 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 2 cut(s) 45, 154
LmnI GCTCC 2 cut(s) 45, 189
LpnPI CCDG 8 cut(s) 40, 76, 88, 96, 103, 160, 176, 312
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 124
MboII GAAGA 2 cut(s) 233, 309
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 50, 268
MluCI AATT 2 cut(s) 36, 210
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 2 cut(s) 66, 109
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 195, 322
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 83, 84, 91
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 2 cut(s) 10, 186
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NciI CCSGG 2 cut(s) 83, 84
NlaIII CATG 2 cut(s) 45, 154
NlaIV GGNNCC 2 cut(s) 47, 88
PagI TCATGA 1 cut(s) 150
PctI GAATGC 2 cut(s) 10, 186
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 78
PsiI TTATAA 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 47, 88
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SacI GAGCTC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 195, 322
ScrFI CCNGG 3 cut(s) 83, 84, 91
SduI GDGCHC 2 cut(s) 50, 268
SetI ASST 4 cut(s) 127, 195, 268, 301
SfcI CTRYAG 1 cut(s) 168
SmaI CCCGGG 1 cut(s) 84
Sse9I AATT 2 cut(s) 36, 210
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 309
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 3 cut(s) 81, 82, 89
TaaI ACNGT 2 cut(s) 148, 172
TaiI ACGT 1 cut(s) 127
TasI AATT 2 cut(s) 36, 210
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 195, 322
Tru9I TTAA 2 cut(s) 195, 322
TscAI CASTG 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 82
TspRI CASTG 1 cut(s) 34
XmaI CCCGGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.