Rh2DG556800

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0005111
Physical Location & Seq
Reverse (-)
78665796 .. 78668110
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG556800.1

Sequence Viewer

Length: 579 bp
ATGTCTTTGACGGGGCAGTGCGGTGGTTGGAGGAAATTCATGTTGATTCTACCTCTGCGTCTAGTTTGGGCTAAACCCACTGGAAGCCGTTGGAACCTATTTACATCGAAAAAAAAACCCAGTCGTCATTCGGCAACCACAACAAAGGCGAGCACTGCAGCCTCCCTTTTCGTGCGCCCTTCTCTTTTCCGTCACCCAAAATCCAACTCTCTCGCATCTCTATCTGCGCGCCCAATTTCTCAAGGTTTGAACATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAGTTGCATGGAGCCCTAATCTGTATATAACTCTGGTGAGGGGAATCCCAGGAACCAGGAGGCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGTATAAGGCCCGCAAACAAAAGGATGCAGACCACCGAGCTCCTCGCCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

192

Amino Acids

21.68

Weight (kDa)

11.97

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 104 - 153 3.5e-17 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
AccII CGCG 1 cut(s) 229
AciI CCGC 2 cut(s) 21, 490
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 2 cut(s) 250, 265
AjnI CCWGG 2 cut(s) 334, 341
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw21I GWGCWC 2 cut(s) 155, 520
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 1 cut(s) 430
AoxI GGCC 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 3 cut(s) 177, 229, 231
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 185, 334, 536
AsuII TTCGAA 1 cut(s) 382
BanII GRGCYC 2 cut(s) 302, 520
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 155, 520
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 402
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 336, 343
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 336, 343
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 3 cut(s) 95, 299, 340
BmrFI CCNGG 2 cut(s) 336, 343
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 2 cut(s) 224, 493
BmuI ACTGGG 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 371
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 334
Bse1I ACTGG 3 cut(s) 85, 120, 287
BseBI CCWGG 2 cut(s) 336, 343
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 508
BseNI ACTGG 3 cut(s) 85, 120, 287
BsePI GCGCGC 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 488
BsiHKAI GWGCWC 2 cut(s) 155, 520
BsmAI GTCTC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 3 cut(s) 155, 302, 520
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 2 cut(s) 21, 490
BspANI GGCC 1 cut(s) 488
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 95, 299, 340
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 382
BsrI ACTGG 3 cut(s) 85, 120, 287
BssECI CCNNGG 1 cut(s) 334
BssHII GCGCGC 1 cut(s) 227
BssMI GATC 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 336, 343
Bst4CI ACNGT 2 cut(s) 400, 424
Bst6I CTCTTC 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 151, 229, 490
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 3 cut(s) 177, 229, 231
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 3 cut(s) 155, 266, 355
BstNI CCWGG 2 cut(s) 336, 343
BstSCI CCNGG 2 cut(s) 334, 341
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 421
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 2 cut(s) 23, 153
BtsIMutI CAGTG 3 cut(s) 23, 78, 153
Cac8I GCNNGC 3 cut(s) 151, 229, 490
CfoI GCGC 3 cut(s) 177, 229, 231
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 360
CviAII CATG 4 cut(s) 40, 253, 294, 403
CviJI RGCY 8 cut(s) 71, 87, 161, 269, 300, 349, 488, 518
CviKI_1 RGCY 8 cut(s) 71, 87, 161, 269, 300, 349, 488, 518
CviQI GTAC 1 cut(s) 360
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Ecl136II GAGCTC 1 cut(s) 518
Eco24I GRGCYC 2 cut(s) 302, 520
Eco53kI GAGCTC 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 334, 341
EcoT38I GRGCYC 2 cut(s) 302, 520
FaeI CATG 4 cut(s) 43, 256, 297, 406
FaiI YATR 9 cut(s) 41, 254, 295, 312, 314, 404, 483, 539, 577
FatI CATG 4 cut(s) 39, 252, 293, 402
FauI CCCGC 1 cut(s) 497
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 2 cut(s) 302, 520
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 62
GlaI GCGC 3 cut(s) 176, 228, 230
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 488
HgaI GACGC 1 cut(s) 47
HhaI GCGC 3 cut(s) 177, 229, 231
Hin1II CATG 4 cut(s) 43, 256, 297, 406
Hin6I GCGC 3 cut(s) 175, 227, 229
HinP1I GCGC 3 cut(s) 175, 227, 229
HinfI GANTC 2 cut(s) 46, 330
HphI GGTGA 3 cut(s) 185, 334, 536
Hpy188III TCNNGA 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 2 cut(s) 400, 424
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 5 cut(s) 158, 293, 390, 506, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 266, 355
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 4 cut(s) 43, 256, 297, 406
HspAI GCGC 3 cut(s) 175, 227, 229
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 2 cut(s) 297, 523
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 2 cut(s) 224, 493
MaeI CTAG 1 cut(s) 62
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 4 cut(s) 371, 485, 561, 564
MhlI GDGCHC 3 cut(s) 155, 302, 520
MluCI AATT 2 cut(s) 35, 234
MmeI TCCRAC 4 cut(s) 8, 71, 228, 463
MnlI CCTC 8 cut(s) 24, 63, 172, 318, 339, 361, 531, 557
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 336, 343
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 2 cut(s) 336, 343
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 155, 266, 355
NdeII GATC 1 cut(s) 435
NlaIII CATG 4 cut(s) 43, 256, 297, 406
NlaIV GGNNCC 3 cut(s) 95, 299, 340
NmuCI GTSAC 1 cut(s) 191
NspV TTCGAA 1 cut(s) 382
PauI GCGCGC 1 cut(s) 227
PctI GAATGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 46, 330
PkrI GCNGC 1 cut(s) 160
PsiI TTATAA 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 334, 341
PspGI CCWGG 2 cut(s) 334, 341
PspN4I GGNNCC 3 cut(s) 95, 299, 340
PspPI GGNCC 1 cut(s) 487
PstI CTGCAG 1 cut(s) 160
PteI GCGCGC 1 cut(s) 227
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SacI GAGCTC 1 cut(s) 520
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 1 cut(s) 487
ScrFI CCNGG 2 cut(s) 336, 343
SduI GDGCHC 3 cut(s) 155, 302, 520
SetI ASST 7 cut(s) 55, 99, 247, 379, 447, 520, 549
SfaNI GCATC 2 cut(s) 224, 493
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 2 cut(s) 35, 234
SsiI CCGC 2 cut(s) 21, 490
SspMI CTAG 1 cut(s) 62
SstI GAGCTC 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 334, 341
TaaI ACNGT 2 cut(s) 400, 424
TaiI ACGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 107, 382
TasI AATT 2 cut(s) 35, 234
TfiI GAWTC 2 cut(s) 46, 330
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 3 cut(s) 23, 85, 160
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 28, 269, 564
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 3 cut(s) 23, 85, 160
XapI RAATTY 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.