Rh4CG231900

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005111
Physical Location & Seq
Reverse (-)
47062988 .. 47064415
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG231900.1

Sequence Viewer

Length: 417 bp
ATGTGTGTGGAGTGGCGGTTTTGGCTTTTGAAGCGGAGAGTTCGTTATGCAAAGCATTGCGGATCCGCCAAGTCAGGGTCAGGTTTGAACATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGTATATAACTCTGGTGAGGGGAATCCCAGGAACTAGGAGGCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTTCTACTGTTAGGGGAATGATCCAACAGGTCAAGAGATTGGTTGTGGTTGAGACAGAAGAGATGCATAAGGCCCGCAAACAAAAGGAGGCAGACCACCGAGCTCCTCGTCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCAAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

138

Amino Acids

15.94

Weight (kDa)

11.62

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 50 - 99 1.3e-16 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AciI CCGC 5 cut(s) 16, 34, 60, 66, 328
AclWI GGATC 3 cut(s) 57, 70, 268
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 3 cut(s) 31, 88, 103
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 3 cut(s) 57, 70, 268
AoxI GGCC 1 cut(s) 324
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 172, 374
AsuII TTCGAA 1 cut(s) 220
BamHI GGATCC 1 cut(s) 62
BanII GRGCYC 2 cut(s) 140, 358
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 358
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 1 cut(s) 180
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 64, 137
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 3 cut(s) 28, 32, 58
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 358
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 140, 358
Bsp143I GATC 2 cut(s) 62, 273
BspACI CCGC 5 cut(s) 16, 34, 60, 66, 328
BspANI GGCC 1 cut(s) 326
BspLI GGNNCC 2 cut(s) 64, 137
BspPI GGATC 3 cut(s) 57, 70, 268
BspT104I TTCGAA 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 2 cut(s) 62, 273
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 238, 262
Bst6I CTCTTC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 65, 276
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 2 cut(s) 62, 273
BstMWI GCNNNNNNNGC 4 cut(s) 22, 31, 104, 193
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 62
BstXI CCANNNNNNTGG 1 cut(s) 132
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 198
CviAII CATG 3 cut(s) 91, 132, 241
CviJI RGCY 6 cut(s) 25, 107, 138, 187, 326, 356
CviKI_1 RGCY 6 cut(s) 25, 107, 138, 187, 326, 356
CviQI GTAC 1 cut(s) 198
DpnI GATC 2 cut(s) 64, 275
DpnII GATC 2 cut(s) 62, 273
DraI TTTAAA 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 356
Eco24I GRGCYC 2 cut(s) 140, 358
Eco53kI GAGCTC 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 321
EcoT38I GRGCYC 2 cut(s) 140, 358
FaeI CATG 3 cut(s) 94, 135, 244
FaiI YATR 9 cut(s) 48, 92, 133, 150, 152, 242, 321, 377, 415
FaqI GGGAC 1 cut(s) 348
FatI CATG 3 cut(s) 90, 131, 240
FauI CCCGC 1 cut(s) 335
FriOI GRGCYC 2 cut(s) 140, 358
FspBI CTAG 1 cut(s) 180
HaeIII GGCC 1 cut(s) 326
Hin1II CATG 3 cut(s) 94, 135, 244
HinfI GANTC 1 cut(s) 168
HphI GGTGA 2 cut(s) 172, 374
Hpy188III TCNNGA 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 238, 262
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 5 cut(s) 50, 131, 228, 319, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 31, 104, 193
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 94, 135, 244
Kzo9I GATC 2 cut(s) 62, 273
LmnI GCTCC 2 cut(s) 135, 361
LpnPI CCDG 8 cut(s) 60, 66, 143, 159, 178, 186, 266, 402
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 214
MalI GATC 2 cut(s) 64, 275
MboI GATC 2 cut(s) 62, 273
MboII GAAGA 4 cut(s) 209, 323, 399, 402
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 140, 358
MluCI AATT 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 156, 177, 199, 334, 369, 395
Mph1103I ATGCAT 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 4 cut(s) 22, 31, 104, 193
NdeII GATC 2 cut(s) 62, 273
NlaIII CATG 3 cut(s) 94, 135, 244
NlaIV GGNNCC 2 cut(s) 64, 137
NsiI ATGCAT 1 cut(s) 321
NspV TTCGAA 1 cut(s) 220
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 168
PsiI TTATAA 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 64, 137
PspPI GGNCC 1 cut(s) 325
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SacI GAGCTC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 2 cut(s) 62, 273
Sau96I GGNCC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 140, 358
SetI ASST 5 cut(s) 85, 217, 285, 358, 387
SfaNI GCATC 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 220
Sse9I AATT 1 cut(s) 126
SsiI CCGC 5 cut(s) 16, 34, 60, 66, 328
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 2 cut(s) 238, 262
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 220
TasI AATT 1 cut(s) 126
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 107, 402
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.