Rw4G018720

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005111
Physical Location & Seq
Reverse (-)
41535734 .. 41537385
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018720.1

Sequence Viewer

Length: 366 bp
ATGTCTGGGTTTAATGTTTTCAATGGATCTGTTCTGGGTTTTCAGTTGACGCCAAAATCGATCTTTCTCTCACTCTGTCATGGATTTCTGGGTTTGAACATGAATGCTTTCAAGGCTTTTAAAACCAATGTTCCAATTGCATGGAGCCCTAATCTGAGCCTTCACAGGCGTACTTTAGAGGCATTACGTCTTCGAAAATGCAACCGAACTGTCATGCGATGGAACACTCCTACTGTTAGGGGAATGATCCAACAGACAGAAGAGATGCATAAGGCCCGCAAACAAAAGGAGGCAGACCACCGAGCTCCTCACCCCCCATTGATTATAAATCACCTCCCTGCTTCTGCCAATGGTTCTTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30

Protein Analysis

121

Amino Acids

13.62

Weight (kDa)

11.26

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30 PF00327 55 - 88 3.7e-11 Ribosomal protein L30p/L7e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AciI CCGC 1 cut(s) 277
AclWI GGATC 2 cut(s) 34, 241
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 3 cut(s) 22, 97, 112
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 307
AlwI GGATC 2 cut(s) 34, 241
AoxI GGCC 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 302, 323
AsuII TTCGAA 1 cut(s) 193
BanII GRGCYC 2 cut(s) 149, 307
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 307
BccI CCATC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 59
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 193
Bsp1286I GDGCHC 2 cut(s) 149, 307
Bsp143I GATC 3 cut(s) 26, 60, 246
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 147
BspDI ATCGAT 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 2 cut(s) 34, 241
BspT104I TTCGAA 1 cut(s) 193
BssMI GATC 3 cut(s) 26, 60, 246
BssNI GRCGYC 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 211, 235
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 155
BstKTI GATC 3 cut(s) 29, 63, 249
BstMBI GATC 3 cut(s) 26, 60, 246
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 141
BstYI RGATCY 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 59
BsuRI GGCC 1 cut(s) 275
BsuTUI ATCGAT 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 59
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 171
CviAII CATG 4 cut(s) 80, 100, 141, 214
CviJI RGCY 5 cut(s) 116, 147, 159, 275, 305
CviKI_1 RGCY 5 cut(s) 116, 147, 159, 275, 305
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 155
DpnI GATC 3 cut(s) 28, 62, 248
DpnII GATC 3 cut(s) 26, 60, 246
DraI TTTAAA 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 305
Eco24I GRGCYC 2 cut(s) 149, 307
Eco53kI GAGCTC 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 305
EcoT22I ATGCAT 1 cut(s) 270
EcoT38I GRGCYC 2 cut(s) 149, 307
FaeI CATG 4 cut(s) 83, 103, 144, 217
FaiI YATR 7 cut(s) 81, 101, 142, 215, 270, 326, 364
FatI CATG 4 cut(s) 79, 99, 140, 213
FauI CCCGC 1 cut(s) 284
FriOI GRGCYC 2 cut(s) 149, 307
HaeIII GGCC 1 cut(s) 275
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 4 cut(s) 83, 103, 144, 217
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HphI GGTGA 2 cut(s) 302, 323
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 211, 235
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 140, 201, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 4 cut(s) 83, 103, 144, 217
Kzo9I GATC 3 cut(s) 26, 60, 246
LmnI GCTCC 2 cut(s) 144, 310
LpnPI CCDG 4 cut(s) 20, 74, 151, 351
LweI GCATC 1 cut(s) 255
MaeII ACGT 1 cut(s) 187
MalI GATC 3 cut(s) 28, 62, 248
MboI GATC 3 cut(s) 26, 60, 246
MboII GAAGA 4 cut(s) 182, 272, 348, 351
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 149, 307
MluCI AATT 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 4 cut(s) 172, 283, 318, 344
Mph1103I ATGCAT 1 cut(s) 270
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 2 cut(s) 12, 120
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 26, 60, 246
NlaIII CATG 4 cut(s) 83, 103, 144, 217
NlaIV GGNNCC 1 cut(s) 146
NsiI ATGCAT 1 cut(s) 270
NspV TTCGAA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 107
PsiI TTATAA 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SacI GAGCTC 1 cut(s) 307
SaqAI TTAA 2 cut(s) 12, 120
Sau3AI GATC 3 cut(s) 26, 60, 246
Sau96I GGNCC 1 cut(s) 274
SduI GDGCHC 2 cut(s) 149, 307
SetI ASST 3 cut(s) 190, 307, 336
SfaNI GCATC 1 cut(s) 255
SfuI TTCGAA 1 cut(s) 193
Sse9I AATT 1 cut(s) 135
SsiI CCGC 1 cut(s) 277
SstI GAGCTC 1 cut(s) 307
TaaI ACNGT 2 cut(s) 211, 235
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 59, 193
TasI AATT 1 cut(s) 135
Tru1I TTAA 2 cut(s) 12, 120
Tru9I TTAA 2 cut(s) 12, 120
TspDTI ATGAA 2 cut(s) 116, 351
XmnI GAANNNNTTC 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.