Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008661

Physical Location & Seq

Genomic Coordinates Reverse (-)

23194833 .. 23198609

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2916 bp

ATGAAGCTTTATCCTCGAACTTCTTCAGGACTCTTTTCTCTCCAATCTCTTCTCAAAAGTGGCTTCTCTCCAACGTTAAACTCTATCGACAGATTTCTTCGATATCTCTACCGTCTTCAGAAGTTTAATTGCATTCTTCAATTCTACTCTCAGCTAGATTCGAAGCAAATCAACATCAATCACCGGATTTACTCAATCGTTTCATGGGCATTTCTCAATTTGAATCGATACGAAGACGCAGAGAAGTTTATCAACATCCATATTTCAAAAGCTTCGATTTTTCCCAGGACCCATATGTTAGATTCTCTAATTCATGGATTTAGCATCACACGTGATGATCCAAGTAAGGGTCTTCTGATTCTCCGAGATTGTTTACGGAATCACGGTGCGTTTCCTTCTTCCTTAACGTTCTGTTCACTGATTTATCGGTTCGTTGAGAAAGGAGAGATGGATAATGCTATTGAGGTTTTAGAGATGATGACGAACAAGAATGTAAATTACCCATTTGATAATTTCGTATGTAGTGCTGTGATTTCTGGGTTTTGTAAGATTGGTAAACCGGAACTTGCGTTAGGGTTTTTCGAAAGTGCTGTCGATTCAGGTGTTCTAGTGCCGAACCTTGTAACTTATACTACGCTTGTGAGTGCTCTTTGTCAGTTAGGTAAGGTTGATGAAGTTAGGGATTTAGTTAGGAGATTGGAAGATGAAGGATTTGAGTTTGACTGTGTGTTCTATAGTAATTGGATTCATGGGTACTTTAAGGGAGGTGCATTGGTGGATGCACTTATGCAGGACAGGGAAATGGTGGAGAAGGGAATGAATCGAGACGTTGTTAGCTATTCGATACTAATAGATGGGTTGTCGAAGGAGGGGAATGTTGAAGAAGCGTTGGGGTTATTAGGGAAGATGATAAAGGAAGGAGTAGAGCCGAATTTGATTACTTATACAGCTATTATTAGGGGACTCTGCAAAATGGGTAAACTTGAAGAGGCATTTGTGTTGTTCAATAGAATTCTAAGTGTTGGAATCGAAGTGGATGAGTTTCTGTATGTGACTTTGATAGATGGAATTTGTAGGAAAGGGAATTTGAATCGAGCTTTCTCTATGTTGGGGGATATGGAGCAGAGAGGGATACAACCAAGCATTCTTACGTATAACACTGTGATTAATGGACTTTGCATGGCAGGGAGAGTGTCGGAGGCAGATGAAGTTTCAAAAGGAGTTGTGGGAGATGTCATTACTTATAGTACTTTATTGGATAGTTATATAAAGGTGCAGAATATTGATGCTGTATTAGAGATTAGGCGTAGATTTTTAGAAGCTAAAATCCCTATGGACTTGGTTATGTGCAACATTCTCCTGAAAGCATTTCTATTGATGGGTGCATATGGAGAAGCTGATGCACTTTACAGGGCAATGCCAGAAATGGATCTGACTCCAGATACAGCCACATACGCAACGATGATTAAGGGGTATTGCAAAACGGGTCAAATCGAAGAGGCACTTGAGATGTTTAATGAGTTGAGGAAAAGCTCAGTTTCTGCAGCTGTATGTTATAATCGCATTATTGATGCACTCTGCAAAAAAGGGATGCTGGACACAGCCACAGAAGTTCTTATCGAGCTGTGGGAGAAAGGTTTATATTTGGACATCCATACATCTCGGACCTTGTTACATTCAATCCATGCTAACGGAGGTGACAAAGGAATACTCGGTTTGGTTTATGGACTGGAACAGTTGAATTCAGATGTTTGTCTTGGGATGCTCAATGATGCTATCTTACTTTTATGCAAGAGAGGTTCTTTCGAGGCAGCGATTGAAGTTTATATGATTATGAGGAGAAAAGGTTTAACTGTTACTTTCCCTTCTACAATTCTAAAAACACTAGTGGACAATCTCAGATCATTGGATGCTTATCTACTCGTTGTTAATGCTGGAGAAACTACTCTGTCTTCAATGGATGTGATCGATTACACAATCATCATCAATGGTCTCTGCAAGGAAGGATTTCTAGTAAAGGCCTTAAATTTGTGCAGTTTTGCCAAAAGCAGAGGTGTCACTCTCAATACCATAACATATAATTCACTCATAAATGGACTTTGCCAGCAAGGTTGTCTTGTAGAAGCTCTCCGTCTATTTGATTCGCTTGAGAATATTGGTTTAGTCCCATCTGAGGTCACCTACGGCATTTTGATTGACAATTTATGCAAAGAAGGGTTGTTTCTTGATGCTGAGAAACTATTGGACAGTATGGTATCTAAGGGACTTGTGCCAAACATTATCATTTATAATTCGATAGTTGACGGGTACTGCAAGCTGGGGCAAACAGAGGACGCCATGAGAGTTGTATCACGGAAAATGATGGGAAGGGTAACACCAGATGCATTCACGGTCAGTTCTATGATCAAAGGTTACTGTAAAAAAGGTGACATGGAAGAAGCTCTCAGTGTGTTTACAGAGTTCAAGGATAAAAATATCTCTGCCGATTTCTTTGGTTTTCTGTTTCTGATCAAAGGCTTCTGCACGAAAGGGCGAATGGAAGAAGCAAGGGGCCTCTTGAGAGAAATGCTTGTTTCAGAATCTGTTGTTAAGCTGATTAACAGAGTTGATGCGGAATTAGCTGAATCTGAATCGATCAGAGGCTTCCTCGTCGAGCTGTGCGAACAAGGAAGGGTCCCTCAGGCTATCAAAATCCTAGATGAGATAAGTTCAACAATCTATCCGTCTGGTAAAAACCTGGGTTCTTACCAAAGGTTGCAGTTCTTGAATGATGTGAATGAAGAAGAGATAAAGAAGAAAGACTATGTTCATGATTTTCATAGCCTGCACTCAACTGTTAGCTCACTCTGCACCAGTGGGAAGCTGGAGCAAGCTAATGAGTTCGTTATGTCTGTGCTCTCTTGTATGCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

971

Amino Acids

108.62

Weight (kDa)

5.42

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	172 - 219	4.6e-08	PPR repeat family
PPR_1	PF12854	203 - 225	5.3e-07	PPR repeat
PPR_2	PF13041	243 - 289	7.6e-07	PPR repeat family
PPR_3	PF13812	266 - 320	1.5e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	266 - 370	3e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	271 - 303	6.5e-09	PPR repeat
PPR_2	PF13041	275 - 324	1.5e-16	PPR repeat family
PPR	PF01535	278 - 308	3.3e-08	PPR repeat
PPR_1	PF12854	307 - 337	1.9e-11	PPR repeat
PPR_2	PF13041	313 - 359	1.1e-10	PPR repeat family
PPR	PF01535	313 - 343	6.8e-07	PPR repeat
TPR_24	PF23276	338 - 472	4.4e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	341 - 390	5.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	342 - 374	2.1e-07	PPR repeat
PPR_2	PF13041	346 - 393	2.5e-14	PPR repeat family
PPR_1	PF12854	376 - 401	2.5e-08	PPR repeat
PPR_2	PF13041	446 - 494	1.3e-09	PPR repeat family
PPR_1	PF12854	477 - 508	5.7e-10	PPR repeat
PPR_2	PF13041	480 - 514	4e-09	PPR repeat family
PPR	PF01535	484 - 512	3.1e-08	PPR repeat
PPR_2	PF13041	516 - 559	1.8e-06	PPR repeat family
PPR_2	PF13041	654 - 702	4.5e-11	PPR repeat family
PPR_long	PF17177	663 - 785	2.5e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	679 - 782	1.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	684 - 715	8.5e-10	PPR repeat
PPR_2	PF13041	689 - 737	5.2e-14	PPR repeat family
PPR	PF01535	691 - 720	5.7e-07	PPR repeat
PPR_1	PF12854	720 - 752	4.2e-09	PPR repeat
PPR_2	PF13041	723 - 760	3.7e-07	PPR repeat family
PPR	PF01535	726 - 756	4.5e-06	PPR repeat
PPR_1	PF12854	754 - 784	9.1e-09	PPR repeat
PPR_2	PF13041	758 - 807	3.5e-11	PPR repeat family
PPR_1	PF12854	791 - 820	4.6e-08	PPR repeat
PPR_2	PF13041	793 - 841	8.7e-11	PPR repeat family
PPR	PF01535	796 - 826	8.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57250
fragaria_vesca	FvH4_4g07420
malus_domestica	MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1
prunus_persica	Prupe.1G077100_v2.0.a1
pyrus_communis	pycom13g21510 pycom16g21000
rosa_chinensis	RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881
rosa_laevigata	RLG00000009236
rosa_multiflora	Rmu_sc0014676.1_g000003
rosa_roxburghii	Rroxscaffold_5G00344750
rosa_rugosa	Rorug04G0019700
rosa_samantha	Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000
rosa_wichuraiana	Rw4G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1557, 2289
AciI	CCGC	1 cut(s)	2612
AclI	AACGTT	2 cut(s)	74, 407
AclWI	GGATC	2 cut(s)	332, 1437
AcsI	RAATTY	6 cut(s)	931, 1011, 1068, 1084, 1741, 2026
AcuI	CTGAAG	2 cut(s)	9, 101
AcvI	CACGTG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	2334
AfaI	GTAC	3 cut(s)	755, 1249, 2309
AfiI	CCNNNNNNNGG	2 cut(s)	347, 2173
AflIII	ACRYGT	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	1885
AjnI	CCWGG	2 cut(s)	284, 2736
Alw21I	GWGCWC	2 cut(s)	649, 2898
Alw26I	GTCTC	2 cut(s)	819, 1997
AlwI	GGATC	2 cut(s)	332, 1437
AlwNI	CAGNNNCTG	2 cut(s)	1541, 2582
AoxI	GGCC	2 cut(s)	2019, 2551
ApeKI	GCWGC	2 cut(s)	1544, 1811
ApoI	RAATTY	6 cut(s)	931, 1011, 1068, 1084, 1741, 2026
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AseI	ATTAAT	1 cut(s)	1167
Asp700I	GAANNNNTTC	2 cut(s)	22, 2007
AspS9I	GGNCC	4 cut(s)	288, 1665, 2551, 2674
AsuHPI	GGTGA	4 cut(s)	173, 1709, 2170, 2438
AsuII	TTCGAA	2 cut(s)	161, 582
AvaII	GGWCC	3 cut(s)	288, 1665, 2674
AxyI	CCTNAGG	1 cut(s)	2679
BbrPI	CACGTG	1 cut(s)	332
BbsI	GAAGAC	4 cut(s)	107, 240, 344, 1944
Bbv12I	GWGCWC	2 cut(s)	649, 2898
BbvI	GCAGC	2 cut(s)	1556, 1823
BccI	CCATC	6 cut(s)	442, 848, 1058, 1372, 2176, 2356
BceAI	ACGGC	1 cut(s)	2200
BciT130I	CCWGG	2 cut(s)	286, 2738
BciVI	GTATCC	1 cut(s)	1125
BclI	TGATCA	2 cut(s)	2403, 2508
BcoDI	GTCTC	2 cut(s)	819, 1997
BcuI	ACTAGT	1 cut(s)	1885
BfaI	CTAG	6 cut(s)	155, 608, 1886, 2012, 2696, 2910
BfmI	CTRYAG	2 cut(s)	733, 1542
BfuI	GTATCC	1 cut(s)	1125
BisI	GCNGC	2 cut(s)	1545, 1812
BlsI	GCNGC	2 cut(s)	1546, 1813
BmcAI	AGTACT	1 cut(s)	1249
Bme1390I	CCNGG	2 cut(s)	286, 2738
Bme18I	GGWCC	3 cut(s)	288, 1665, 2674
BmgT120I	GGNCC	4 cut(s)	288, 1665, 2551, 2674
BmiI	GGNNCC	4 cut(s)	290, 2552, 2675, 2676
BmrFI	CCNGG	2 cut(s)	286, 2738
BpiI	GAAGAC	4 cut(s)	107, 240, 344, 1944
BplI	GAGNNNNNCTC	2 cut(s)	2631, 2663
BpmI	CTGGAG	3 cut(s)	1422, 1956, 2885
Bpu14I	TTCGAA	2 cut(s)	161, 582
BpuEI	CTTGAG	3 cut(s)	1526, 2168, 2578
Bsa29I	ATCGAT	3 cut(s)	226, 1968, 2633
BsaAI	YACGTR	2 cut(s)	332, 1152
BsaBI	GATNNNNATC	1 cut(s)	1914
BsaHI	GRCGYC	1 cut(s)	2334
BsaI	GGTCTC	1 cut(s)	1997
BsaJI	CCNNGG	2 cut(s)	284, 2737
BsaWI	WCCGGW	2 cut(s)	183, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	1831, 1861
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 2173
Bse1I	ACTGG	2 cut(s)	1734, 2853
Bse21I	CCTNAGG	1 cut(s)	2679
Bse3DI	GCAATG	1 cut(s)	1422
Bse8I	GATNNNNATC	1 cut(s)	1914
BseBI	CCWGG	2 cut(s)	286, 2738
BseCI	ATCGAT	3 cut(s)	226, 1968, 2633
BseDI	CCNNGG	2 cut(s)	284, 2737
BseGI	GGATG	8 cut(s)	255, 784, 1042, 1596, 1650, 1767, 1915, 1966
BseJI	GATNNNNATC	1 cut(s)	1914
BseLI	CCNNNNNNNGG	2 cut(s)	347, 2173
BseMI	GCAATG	1 cut(s)	1422
BseMII	CTCAG	7 cut(s)	164, 1548, 1912, 2163, 2223, 2458, 2693
BseNI	ACTGG	2 cut(s)	1734, 2853
BseRI	GAGGAG	1 cut(s)	1852
BseXI	GCAGC	2 cut(s)	1556, 1823
BseYI	CCCAGC	1 cut(s)	2317
BsgI	GTGCAG	5 cut(s)	1295, 2053, 2506, 2810, 2833
BshFI	GGCC	2 cut(s)	2021, 2553
BshVI	ATCGAT	3 cut(s)	226, 1968, 2633
BsiHKAI	GWGCWC	2 cut(s)	649, 2898
BsiSI	CCGG	2 cut(s)	184, 560
BslFI	GGGAC	4 cut(s)	975, 2150, 2277, 2660
BslI	CCNNNNNNNGG	2 cut(s)	347, 2173
BsmAI	GTCTC	2 cut(s)	819, 1997
BsmBI	CGTCTC	1 cut(s)	819
BsmFI	GGGAC	4 cut(s)	975, 2150, 2277, 2660
BsmI	GAATGC	3 cut(s)	132, 1143, 2384
BsnI	GGCC	2 cut(s)	2021, 2553
Bso31I	GGTCTC	1 cut(s)	1997
Bsp119I	TTCGAA	2 cut(s)	161, 582
Bsp1286I	GDGCHC	2 cut(s)	649, 2898
Bsp143I	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
BspACI	CCGC	1 cut(s)	2612
BspANI	GGCC	2 cut(s)	2021, 2553
BspCNI	CTCAG	7 cut(s)	163, 1547, 1911, 2164, 2224, 2457, 2692
BspDI	ATCGAT	3 cut(s)	226, 1968, 2633
BspHI	TCATGA	1 cut(s)	2809
BspLI	GGNNCC	4 cut(s)	290, 2552, 2675, 2676
BspMAI	CTGCAG	1 cut(s)	1546
BspPI	GGATC	2 cut(s)	332, 1437
BspT104I	TTCGAA	2 cut(s)	161, 582
BspTNI	GGTCTC	1 cut(s)	1997
BsrDI	GCAATG	1 cut(s)	1422
BsrI	ACTGG	2 cut(s)	1734, 2853
BssECI	CCNNGG	2 cut(s)	284, 2737
BssMI	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
BssNI	GRCGYC	1 cut(s)	2334
Bst2UI	CCWGG	2 cut(s)	286, 2738
Bst6I	CTCTTC	4 cut(s)	54, 981, 1491, 2778
BstACI	GRCGYC	1 cut(s)	2334
BstBAI	YACGTR	2 cut(s)	332, 1152
BstBI	TTCGAA	2 cut(s)	161, 582
BstC8I	GCNNGC	4 cut(s)	2105, 2315, 2825, 2871
BstDEI	CTNAG	9 cut(s)	150, 1016, 1534, 1898, 2172, 2232, 2259, 2444, 2679
BstEII	GGTNACC	1 cut(s)	2176
BstF5I	GGATG	8 cut(s)	255, 784, 1042, 1596, 1650, 1767, 1915, 1966
BstKTI	GATC	7 cut(s)	340, 1432, 1904, 1968, 2406, 2511, 2637
BstMAI	GTCTC	2 cut(s)	819, 1997
BstMBI	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
BstMWI	GCNNNNNNNGC	3 cut(s)	1454, 2618, 2847
BstNI	CCWGG	2 cut(s)	286, 2738
BstPI	GGTNACC	1 cut(s)	2176
BstSCI	CCNGG	2 cut(s)	284, 2736
BstSFI	CTRYAG	2 cut(s)	733, 1542
BstSNI	TACGTA	1 cut(s)	1152
BstV1I	GCAGC	2 cut(s)	1556, 1823
BstV2I	GAAGAC	4 cut(s)	107, 240, 344, 1944
BstX2I	RGATCY	1 cut(s)	1429
BstYI	RGATCY	1 cut(s)	1429
Bsu15I	ATCGAT	3 cut(s)	226, 1968, 2633
Bsu36I	CCTNAGG	1 cut(s)	2679
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	2 cut(s)	2021, 2553
BsuTUI	ATCGAT	3 cut(s)	226, 1968, 2633
BtsCI	GGATG	8 cut(s)	255, 784, 1042, 1596, 1650, 1767, 1915, 1966
BtsIMutI	CAGTG	4 cut(s)	416, 1158, 2452, 2860
Cac8I	GCNNGC	4 cut(s)	2105, 2315, 2825, 2871
CaiI	CAGNNNCTG	2 cut(s)	1541, 2582
CciI	TCATGA	1 cut(s)	2809
Cfr13I	GGNCC	4 cut(s)	288, 1665, 2551, 2674
ClaI	ATCGAT	3 cut(s)	226, 1968, 2633
CseI	GACGC	2 cut(s)	245, 2342
Csp6I	GTAC	3 cut(s)	754, 1248, 2308
CviAII	CATG	8 cut(s)	204, 314, 749, 1180, 1685, 2338, 2431, 2810
CviQI	GTAC	3 cut(s)	754, 1248, 2308
DdeI	CTNAG	9 cut(s)	150, 1016, 1534, 1898, 2172, 2232, 2259, 2444, 2679
DpnI	GATC	7 cut(s)	339, 1431, 1903, 1967, 2405, 2510, 2636
DpnII	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
Eam1104I	CTCTTC	4 cut(s)	54, 981, 1491, 2778
EarI	CTCTTC	4 cut(s)	54, 981, 1491, 2778
Eco105I	TACGTA	1 cut(s)	1152
Eco147I	AGGCCT	1 cut(s)	2021
Eco31I	GGTCTC	1 cut(s)	1997
Eco32I	GATATC	1 cut(s)	104
Eco47I	GGWCC	3 cut(s)	288, 1665, 2674
Eco57I	CTGAAG	2 cut(s)	9, 101
Eco72I	CACGTG	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	2679
Eco91I	GGTNACC	1 cut(s)	2176
EcoO109I	RGGNCCY	3 cut(s)	288, 2551, 2674
EcoO65I	GGTNACC	1 cut(s)	2176
EcoRI	GAATTC	2 cut(s)	1011, 1741
EcoRII	CCWGG	2 cut(s)	284, 2736
EcoRV	GATATC	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	2386
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	8 cut(s)	207, 317, 752, 1183, 1688, 2341, 2434, 2813
FalI	AAGNNNNNCTT	4 cut(s)	1488, 1520, 2100, 2132
FaqI	GGGAC	4 cut(s)	975, 2150, 2277, 2660
FatI	CATG	8 cut(s)	203, 313, 748, 1179, 1684, 2337, 2430, 2809
FauNDI	CATATG	2 cut(s)	294, 1387
FbaI	TGATCA	2 cut(s)	2403, 2508
Fnu4HI	GCNGC	2 cut(s)	1545, 1812
FokI	GGATG	8 cut(s)	242, 791, 1049, 1603, 1637, 1774, 1922, 1973
Fsp4HI	GCNGC	2 cut(s)	1545, 1812
FspBI	CTAG	6 cut(s)	155, 608, 1886, 2012, 2696, 2910
GluI	GCNGC	2 cut(s)	1545, 1812
GsaI	CCCAGC	1 cut(s)	2321
GsuI	CTGGAG	3 cut(s)	1422, 1956, 2885
HaeIII	GGCC	2 cut(s)	2021, 2553
HapII	CCGG	2 cut(s)	184, 560
HgaI	GACGC	2 cut(s)	245, 2342
Hin1I	GRCGYC	1 cut(s)	2334
Hin1II	CATG	8 cut(s)	207, 317, 752, 1183, 1688, 2341, 2434, 2813
HincII	GTYRAC	1 cut(s)	2302
HindII	GTYRAC	1 cut(s)	2302
HindIII	AAGCTT	2 cut(s)	5, 270
HpaII	CCGG	2 cut(s)	184, 560
HphI	GGTGA	4 cut(s)	173, 1709, 2170, 2438
Hpy166II	GTNNAC	7 cut(s)	374, 416, 557, 980, 1891, 2302, 2454
Hpy188III	TCNNGA	8 cut(s)	27, 824, 1360, 1439, 2225, 2557, 2764, 2810
Hpy8I	GTNNAC	7 cut(s)	374, 416, 557, 980, 1891, 2302, 2454
Hpy99I	CGWCG	1 cut(s)	2654
HpyCH4IV	ACGT	5 cut(s)	74, 331, 407, 828, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1454, 2618, 2847
HpyF3I	CTNAG	9 cut(s)	150, 1016, 1534, 1898, 2172, 2232, 2259, 2444, 2679
HpySE526I	ACGT	5 cut(s)	74, 331, 407, 828, 1151
Hsp92I	GRCGYC	1 cut(s)	2334
Hsp92II	CATG	8 cut(s)	207, 317, 752, 1183, 1688, 2341, 2434, 2813
KflI	GGGWCCC	1 cut(s)	2674
Ksp22I	TGATCA	2 cut(s)	2403, 2508
Kzo9I	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
LmnI	GCTCC	2 cut(s)	1120, 2866
Lsp1109I	GCAGC	2 cut(s)	1556, 1823
MaeI	CTAG	6 cut(s)	155, 608, 1886, 2012, 2696, 2910
MaeII	ACGT	5 cut(s)	74, 331, 407, 828, 1151
MalI	GATC	7 cut(s)	339, 1431, 1903, 1967, 2405, 2510, 2636
MboI	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
MflI	RGATCY	1 cut(s)	1429
MhlI	GDGCHC	2 cut(s)	649, 2898
MlyI	GAGTC	3 cut(s)	24, 957, 1429
MmeI	TCCRAC	3 cut(s)	95, 1003, 1176
Mph1103I	ATGCAT	1 cut(s)	2386
MroXI	GAANNNNTTC	2 cut(s)	22, 2007
MspA1I	CMGCKG	1 cut(s)	1547
MspI	CCGG	2 cut(s)	184, 560
MspR9I	CCNGG	2 cut(s)	286, 2738
Mva1269I	GAATGC	3 cut(s)	132, 1143, 2384
MvaI	CCWGG	2 cut(s)	286, 2738
MwoI	GCNNNNNNNGC	3 cut(s)	1454, 2618, 2847
NdeI	CATATG	2 cut(s)	294, 1387
NdeII	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
NlaIII	CATG	8 cut(s)	207, 317, 752, 1183, 1688, 2341, 2434, 2813
NlaIV	GGNNCC	4 cut(s)	290, 2552, 2675, 2676
NmuCI	GTSAC	5 cut(s)	1051, 1697, 2056, 2176, 2426
NsiI	ATGCAT	1 cut(s)	2386
NspV	TTCGAA	2 cut(s)	161, 582
PagI	TCATGA	1 cut(s)	2809
PceI	AGGCCT	1 cut(s)	2021
PcsI	WCGNNNNNNNCGW	1 cut(s)	2658
PctI	GAATGC	3 cut(s)	132, 1143, 2384
PdmI	GAANNNNTTC	2 cut(s)	22, 2007
PkrI	GCNGC	2 cut(s)	1546, 1813
PleI	GAGTC	3 cut(s)	24, 957, 1429
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
PpsI	GAGTC	3 cut(s)	24, 957, 1429
Ppu21I	YACGTR	2 cut(s)	332, 1152
PpuMI	RGGWCCY	2 cut(s)	288, 2674
PshBI	ATTAAT	1 cut(s)	1167
PsiI	TTATAA	2 cut(s)	1557, 2289
Psp1406I	AACGTT	2 cut(s)	74, 407
Psp5II	RGGWCCY	2 cut(s)	288, 2674
Psp6I	CCWGG	2 cut(s)	284, 2736
PspCI	CACGTG	1 cut(s)	332
PspEI	GGTNACC	1 cut(s)	2176
PspFI	CCCAGC	1 cut(s)	2317
PspGI	CCWGG	2 cut(s)	284, 2736
PspN4I	GGNNCC	4 cut(s)	290, 2552, 2675, 2676
PspPI	GGNCC	4 cut(s)	288, 1665, 2551, 2674
PspPPI	RGGWCCY	2 cut(s)	288, 2674
PstI	CTGCAG	1 cut(s)	1546
PstNI	CAGNNNCTG	2 cut(s)	1541, 2582
PsuI	RGATCY	1 cut(s)	1429
PvuII	CAGCTG	1 cut(s)	1547
RsaI	GTAC	3 cut(s)	755, 1249, 2309
RsaNI	GTAC	3 cut(s)	754, 1248, 2308
SatI	GCNGC	2 cut(s)	1545, 1812
Sau3AI	GATC	7 cut(s)	337, 1429, 1901, 1965, 2403, 2508, 2634
Sau96I	GGNCC	4 cut(s)	288, 1665, 2551, 2674
ScaI	AGTACT	1 cut(s)	1249
SchI	GAGTC	3 cut(s)	24, 957, 1429
ScrFI	CCNGG	2 cut(s)	286, 2738
SduI	GDGCHC	2 cut(s)	649, 2898
SfcI	CTRYAG	2 cut(s)	733, 1542
SfuI	TTCGAA	2 cut(s)	161, 582
SinI	GGWCC	3 cut(s)	288, 1665, 2674
SmlI	CTYRAG	3 cut(s)	1505, 2147, 2557
SmoI	CTYRAG	3 cut(s)	1505, 2147, 2557
SnaBI	TACGTA	1 cut(s)	1152
SpeI	ACTAGT	1 cut(s)	1885
SseBI	AGGCCT	1 cut(s)	2021
SsiI	CCGC	1 cut(s)	2612
SspI	AATATT	2 cut(s)	1282, 2155
SspMI	CTAG	6 cut(s)	155, 608, 1886, 2012, 2696, 2910
StuI	AGGCCT	1 cut(s)	2021
StyD4I	CCNGG	2 cut(s)	284, 2736
TaiI	ACGT	5 cut(s)	77, 334, 410, 831, 1154
TatI	WGTACW	1 cut(s)	1247
TscAI	CASTG	4 cut(s)	423, 1165, 2452, 2860
TseFI	GTSAC	5 cut(s)	1051, 1697, 2056, 2176, 2426
TseI	GCWGC	2 cut(s)	1544, 1811
Tsp45I	GTSAC	5 cut(s)	1051, 1697, 2056, 2176, 2426
TspGWI	ACGGA	5 cut(s)	391, 1707, 2120, 2368, 2712
TspRI	CASTG	4 cut(s)	423, 1165, 2452, 2860
VpaK11BI	GGWCC	3 cut(s)	288, 1665, 2674
VspI	ATTAAT	1 cut(s)	1167
XapI	RAATTY	6 cut(s)	931, 1011, 1068, 1084, 1741, 2026
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2860
XmnI	GAANNNNTTC	2 cut(s)	22, 2007
XspI	CTAG	6 cut(s)	155, 608, 1886, 2012, 2696, 2910
ZrmI	AGTACT	1 cut(s)	1249
Zsp2I	ATGCAT	1 cut(s)	2386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.