Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008661

Physical Location & Seq

Genomic Coordinates Forward (+)

18240416 .. 18242638

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g21510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGGTTGAAGATTTGGGAATTGTAGTTGATGAATTCATGTATGCAACTTTAATTCACGGGTCTTGCATGAGAGGAGATCTCGATGATGTTTTTGATTTGCTACATAAAATGGAGGAGAGGGGGATTAATCCAAGCATTGTCACATACAATACTGTAATTAATGGATTATGCAAATTTGGGAGGACATGCGAGGCTGATGAGATCTCAAAGGGTATACTTGGAGATACAATTACATATAGTACGCTGCTACATGGATATATTGAGGAAGAAAATATCACGGGGATTCTTGAAACGAAGAGGAGATTGGAGGAAGCCGGAGTCTACATGGATGTTGTTATGTGTAACATACTTATCAAAGCACTGTTCATGGTGGGGGCATTTGACGATGCTTATATACTATACAAGGGAATGCCAGAGAAGGGTTTGGTTGCAGATTCCAGTACATATTGTACAATGATTGATGGGTACTGTAAAGTTGGTAGAATGGATGAGGCACTTGAGGTATTTGATGAGTTCAGAAGGACACTAGGTTCCTCCGTTGCATGTTATAATTGTATTATCAGTTCGCTCTGTAAGCAGGGAATGGTAGATATGGCCACAGAGGTATTTATTGAACTCAGTGGGAAAGGTTTAGGTTTCGATGTAGGTATCTATAATATTCTGTTGAAGGCAATTTTTGAAGACAATAGTGCAGTTGGAGTTATAAATTTGGTTCGACGGATTGATAGTTTGAAGACAGAAGTGTATGATATTGTTTGCAATGATGCCATCAGCTTCTTGTGCAGGAGAGGTTTTCCCGAGTCTGCATGCGAGGTGTACTTGGCGATGAGGAGGAAAGGGTCAGTTGCCACAAGCAAAACTTACTGTTCAATTTTAGAAGGTCTTATCCATGATGGGAAAGAGTGGCTAACTCAATCTTTCTTGACCATCTTTGTGAAAGAATATGGCCTAGAAGAACCCACAGTAAGCAAGATTCTAGCTTACTACATAAGTCTGAAGAATGTTGATGATGCTTTCTGGTTTCTAGACAAAATGAAGGATAAGCCTGCAGCTGTCACTTTGCCTGTTAGTCTTTATAAGACACTTATAAAGACTGGTAGGGTTTTGGATGCATATAAACTTGTCATGGTGGCCGGAGATGGTCTACCTATCCTGGATGCATTTGATTATTCGCTTATGGTTGATAGTCTTTGTAAAGGAGGACATATCAGTGAGGCATTAGATCTGTGTAGTATTGCTAAAAATAAAGGAGTGGCACTTGATATCATCACTTATAATTCAGTTATAAATGCATTATGCCGCCAAGGCCACCTTGTTGAAGCATTTCGGCTATTTGATTCATTAGAGAGAATTAATTTGGTACCCACGGAAATCACATATGCTACATTGATTGATGCCTTACGTAGAGAGGGGTTTCTTCTGGATGCCAAGGAGTTATTTGAGAGGATGGTTCTCAAGGGCTTTAAGCCAAATACACATGTTTACAACTCGATTATTGATGGTTATTGCAAAATTGGAGATATGGATGATGCCTTGAAGCTTCTTTATGAATTGGACTTAAAATCCCTCAGGCCTGATGAATTCACTGTTAGTATTATAATCAATGGCTTTTGTCTAAAGGGTGATATAGAAGGAGCTCTTGAATTCTTTGTTGACCTCAAGGAAAAAGGTACATTACCTGATTTTTTGGGTTTCTTATATTTACTAAGAGGTCTATGCGCTAAGGGAAGGATGGAAGAAGCCAGAACCATCTTGAGAGAAATGCTCAACTCCCAGTCTGTTTTGGAGCTAATAAATAGAGTTGATGTTGAGGTCGAAACAGATTCATTAGATGGTTTTCTTGCGTCTTTATGTGAGCAAGGCCGTATCGAAGAATCACTTACTGTCCTTAATGAAATTGGGTGCATGTTTTTCCCTGTTAGAGGTTCACCTAATACTCACCAACAATTTCTTAAATTAGACAAGCCTTATGACAGGGAGCCTTCTGGTATAGTTGTTTCAAATTCTGTAACCTCCACCGGTGCAGATTTGGATATTCAGCTTTCTGAAATGAAGAAAGTAGAGAAGGTGGCGGAAAATTATGGCGGTGGAGGGAGATGGTCTCAATTTAAAGATTTTGACGATTGCTATAAGCAAGTTGCGACGCTCTGTTCATGTGGGGAGATACAAAAGGCTAGTCAATTAGCAAAGGAGATGGTTTCTAATTTTGGCAGGGCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

741

Amino Acids

82.56

Weight (kDa)

4.82

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	2 - 54	2.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	6 - 38	3.1e-06	PPR repeat
PPR_2	PF13041	10 - 58	1.8e-14	PPR repeat family
PPR_1	PF12854	40 - 65	8.7e-08	PPR repeat
PPR_2	PF13041	110 - 158	3.2e-12	PPR repeat family
PPR_1	PF12854	140 - 171	1.1e-11	PPR repeat
PPR_2	PF13041	145 - 172	3.5e-06	PPR repeat family
PPR	PF01535	147 - 173	1.1e-08	PPR repeat
PPR_2	PF13041	179 - 224	1.5e-07	PPR repeat family
PPR_1	PF12854	180 - 205	4.2e-06	PPR repeat
PPR_2	PF13041	390 - 434	4.2e-08	PPR repeat family
PPR_long	PF17177	390 - 532	6.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	413 - 466	1.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	416 - 447	1.8e-10	PPR repeat
PPR_2	PF13041	421 - 467	3.5e-13	PPR repeat family
PPR	PF01535	423 - 451	1.8e-06	PPR repeat
PPR_1	PF12854	452 - 484	3.4e-06	PPR repeat
PPR_1	PF12854	486 - 515	1.5e-10	PPR repeat
PPR_2	PF13041	490 - 538	8.3e-15	PPR repeat family
PPR	PF01535	494 - 518	2.6e-06	PPR repeat
PPR_1	PF12854	522 - 551	4.3e-07	PPR repeat
PPR_2	PF13041	532 - 573	8.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57250
fragaria_vesca	FvH4_4g07420
malus_domestica	MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1
prunus_persica	Prupe.1G077100_v2.0.a1
pyrus_communis	pycom13g21510 pycom16g21000
rosa_chinensis	RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881
rosa_laevigata	RLG00000009236
rosa_multiflora	Rmu_sc0014676.1_g000003
rosa_roxburghii	Rroxscaffold_5G00344750
rosa_rugosa	Rorug04G0019700
rosa_samantha	Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000
rosa_wichuraiana	Rw4G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	7 cut(s)	549, 704, 1077, 1088, 1275, 1286, 1598
Acc65I	GGTACC	1 cut(s)	1360
AccB1I	GGYRCC	1 cut(s)	1360
AccI	GTMKAC	3 cut(s)	214, 321, 1144
AciI	CCGC	3 cut(s)	1300, 2072, 2085
AcoI	YGGCCR	2 cut(s)	594, 1131
AcsI	RAATTY	6 cut(s)	32, 173, 706, 1580, 1643, 2002
AcuI	CTGAAG	1 cut(s)	1016
AfaI	GTAC	7 cut(s)	241, 442, 451, 467, 818, 1362, 1672
AfiI	CCNNNNNNNGG	2 cut(s)	419, 1922
AflIII	ACRYGT	1 cut(s)	1477
AgeI	ACCGGT	1 cut(s)	2018
AjnI	CCWGG	1 cut(s)	1152
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	8 cut(s)	774, 980, 1052, 1540, 1637, 1789, 2041, 2220
AluI	AGCT	8 cut(s)	774, 980, 1052, 1540, 1637, 1789, 2041, 2220
Alw21I	GWGCWC	1 cut(s)	1639
Alw26I	GTCTC	1 cut(s)	2106
Ama87I	CYCGRG	1 cut(s)	797
AoxI	GGCC	7 cut(s)	594, 946, 1131, 1306, 1571, 1861, 2214
ApeKI	GCWGC	2 cut(s)	244, 1049
ApoI	RAATTY	6 cut(s)	32, 173, 706, 1580, 1643, 2002
ArsI	GACNNNNNNTTYG	2 cut(s)	2161, 2193
AseI	ATTAAT	3 cut(s)	126, 159, 1353
AsiGI	ACCGGT	1 cut(s)	2018
Asp700I	GAANNNNTTC	1 cut(s)	1323
Asp718I	GGTACC	1 cut(s)	1360
AspLEI	GCGC	1 cut(s)	1721
AspS9I	GGNCC	1 cut(s)	2214
AsuHPI	GGTGA	3 cut(s)	1634, 1920, 1931
AvaI	CYCGRG	1 cut(s)	797
AxyI	CCTNAGG	1 cut(s)	1568
BalI	TGGCCA	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	1360
BanII	GRGCYC	1 cut(s)	1639
BbsI	GAAGAC	2 cut(s)	687, 740
Bbv12I	GWGCWC	1 cut(s)	1639
BbvI	GCAGC	2 cut(s)	231, 1061
BceAI	ACGGC	1 cut(s)	1848
BciT130I	CCWGG	1 cut(s)	1154
BcoDI	GTCTC	1 cut(s)	2106
BfaI	CTAG	6 cut(s)	527, 950, 977, 1025, 2175, 2221
BfmI	CTRYAG	1 cut(s)	1047
BglI	GCCNNNNNGGC	1 cut(s)	1305
BglII	AGATCT	3 cut(s)	76, 201, 1222
BisI	GCNGC	3 cut(s)	245, 1050, 1300
BlsI	GCNGC	3 cut(s)	246, 1051, 1301
Bme1390I	CCNGG	1 cut(s)	1154
BmeT110I	CYCGRG	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	2214
BmiI	GGNNCC	3 cut(s)	532, 1362, 1980
BmrFI	CCNGG	1 cut(s)	1154
BmrI	ACTGGG	1 cut(s)	1768
BmsI	GCATC	8 cut(s)	376, 754, 1000, 1099, 1147, 1384, 1414, 1519
BmuI	ACTGGG	1 cut(s)	1768
BpiI	GAAGAC	2 cut(s)	687, 740
BplI	GAGNNNNNCTC	6 cut(s)	63, 95, 1749, 1781, 2086, 2118
Bpu10I	CCTNAGC	1 cut(s)	1722
BpuEI	CTTGAG	4 cut(s)	518, 1439, 1643, 1774
BsaAI	YACGTR	1 cut(s)	1403
BsaI	GGTCTC	1 cut(s)	2106
BsaJI	CCNNGG	3 cut(s)	1303, 1365, 1428
BsaWI	WCCGGW	1 cut(s)	2018
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 1922
Bse118I	RCCGGY	1 cut(s)	2018
Bse1I	ACTGG	3 cut(s)	438, 1099, 1774
Bse21I	CCTNAGG	1 cut(s)	1568
Bse3DI	GCAATG	1 cut(s)	766
BseBI	CCWGG	1 cut(s)	1154
BseDI	CCNNGG	3 cut(s)	1303, 1365, 1428
BseGI	GGATG	8 cut(s)	334, 493, 1114, 1162, 1429, 1452, 1531, 1737
BseLI	CCNNNNNNNGG	2 cut(s)	419, 1922
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	2 cut(s)	631, 1582
BseNI	ACTGG	3 cut(s)	438, 1099, 1774
BseRI	GAGGAG	4 cut(s)	87, 128, 313, 844
BseXI	GCAGC	2 cut(s)	231, 1061
BsgI	GTGCAG	3 cut(s)	711, 802, 2043
BshFI	GGCC	7 cut(s)	596, 948, 1133, 1308, 1573, 1863, 2216
BshNI	GGYRCC	1 cut(s)	1360
BshTI	ACCGGT	1 cut(s)	2018
BsiHKAI	GWGCWC	1 cut(s)	1639
BsiHKCI	CYCGRG	1 cut(s)	797
BsiSI	CCGG	3 cut(s)	315, 1134, 2019
BslI	CCNNNNNNNGG	2 cut(s)	419, 1922
BsmAI	GTCTC	1 cut(s)	2106
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	7 cut(s)	596, 948, 1133, 1308, 1573, 1863, 2216
Bso31I	GGTCTC	1 cut(s)	2106
BsoBI	CYCGRG	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	1639
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	76, 201, 1222
BspACI	CCGC	3 cut(s)	1300, 2072, 2085
BspANI	GGCC	7 cut(s)	596, 948, 1133, 1308, 1573, 1863, 2216
BspCNI	CTCAG	2 cut(s)	630, 1581
BspLI	GGNNCC	3 cut(s)	532, 1362, 1980
BspMAI	CTGCAG	1 cut(s)	1051
BspT107I	GGYRCC	1 cut(s)	1360
BspTNI	GGTCTC	1 cut(s)	2106
BsrDI	GCAATG	1 cut(s)	766
BsrFI	RCCGGY	1 cut(s)	2018
BsrGI	TGTACA	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	438, 1099, 1774
BssAI	RCCGGY	1 cut(s)	2018
BssECI	CCNNGG	3 cut(s)	1303, 1365, 1428
BssMI	GATC	3 cut(s)	76, 201, 1222
BssNAI	GTATAC	1 cut(s)	215
BssT1I	CCWWGG	2 cut(s)	1303, 1428
Bst1107I	GTATAC	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	1154
Bst4CI	ACNGT	7 cut(s)	154, 363, 470, 866, 964, 1588, 1885
Bst6I	CTCTTC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	1403
BstC8I	GCNNGC	3 cut(s)	808, 1047, 2218
BstDEI	CTNAG	4 cut(s)	617, 1568, 1706, 1722
BstDSI	CCRYGG	1 cut(s)	1365
BstENI	CCTNNNNNAGG	1 cut(s)	1920
BstF5I	GGATG	8 cut(s)	334, 493, 1114, 1162, 1429, 1452, 1531, 1737
BstHHI	GCGC	1 cut(s)	1721
BstKTI	GATC	3 cut(s)	79, 204, 1225
BstMAI	GTCTC	1 cut(s)	2106
BstMBI	GATC	3 cut(s)	76, 201, 1222
BstMWI	GCNNNNNNNGC	4 cut(s)	574, 780, 1305, 2217
BstNI	CCWGG	1 cut(s)	1154
BstNSI	RCATGY	5 cut(s)	189, 546, 810, 1481, 1909
BstSCI	CCNGG	1 cut(s)	1152
BstSFI	CTRYAG	1 cut(s)	1047
BstSNI	TACGTA	1 cut(s)	1403
BstV1I	GCAGC	2 cut(s)	231, 1061
BstV2I	GAAGAC	2 cut(s)	687, 740
BstX2I	RGATCY	3 cut(s)	76, 201, 1222
BstYI	RGATCY	3 cut(s)	76, 201, 1222
BstZ17I	GTATAC	1 cut(s)	215
Bsu36I	CCTNAGG	1 cut(s)	1568
BsuRI	GGCC	7 cut(s)	596, 948, 1133, 1308, 1573, 1863, 2216
BtgI	CCRYGG	1 cut(s)	1365
BtgZI	GCGATG	1 cut(s)	839
BtsCI	GGATG	8 cut(s)	334, 493, 1114, 1162, 1429, 1452, 1531, 1737
BtsIMutI	CAGTG	4 cut(s)	359, 625, 1216, 1584
Cac8I	GCNNGC	3 cut(s)	808, 1047, 2218
CfoI	GCGC	1 cut(s)	1721
Cfr10I	RCCGGY	1 cut(s)	2018
Cfr13I	GGNCC	1 cut(s)	2214
CseI	GACGC	2 cut(s)	1833, 2152
Csp6I	GTAC	7 cut(s)	240, 441, 450, 466, 817, 1361, 1671
CspAI	ACCGGT	1 cut(s)	2018
CviQI	GTAC	7 cut(s)	240, 441, 450, 466, 817, 1361, 1671
DdeI	CTNAG	4 cut(s)	617, 1568, 1706, 1722
DpnI	GATC	3 cut(s)	78, 203, 1224
DpnII	GATC	3 cut(s)	76, 201, 1222
DraI	TTTAAA	1 cut(s)	2110
EaeI	YGGCCR	2 cut(s)	594, 1131
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	2087
Ecl136II	GAGCTC	1 cut(s)	1637
Eco105I	TACGTA	1 cut(s)	1403
Eco130I	CCWWGG	2 cut(s)	1303, 1428
Eco147I	AGGCCT	1 cut(s)	1573
Eco24I	GRGCYC	1 cut(s)	1639
Eco31I	GGTCTC	1 cut(s)	2106
Eco32I	GATATC	1 cut(s)	1264
Eco53kI	GAGCTC	1 cut(s)	1637
Eco57I	CTGAAG	1 cut(s)	1016
Eco81I	CCTNAGG	1 cut(s)	1568
Eco88I	CYCGRG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	1637
EcoNI	CCTNNNNNAGG	1 cut(s)	1920
EcoRI	GAATTC	3 cut(s)	32, 1580, 1643
EcoRII	CCWGG	1 cut(s)	1152
EcoRV	GATATC	1 cut(s)	1264
EcoT14I	CCWWGG	2 cut(s)	1303, 1428
EcoT22I	ATGCAT	3 cut(s)	1114, 1162, 1294
EcoT38I	GRGCYC	1 cut(s)	1639
ErhI	CCWWGG	2 cut(s)	1303, 1428
FalI	AAGNNNNNCTT	8 cut(s)	844, 876, 1296, 1328, 1623, 1655, 1863, 1895
FauNDI	CATATG	1 cut(s)	1378
FblI	GTMKAC	3 cut(s)	214, 321, 1144
Fnu4HI	GCNGC	3 cut(s)	245, 1050, 1300
FokI	GGATG	8 cut(s)	341, 500, 1121, 1169, 1436, 1459, 1538, 1744
FriOI	GRGCYC	1 cut(s)	1639
Fsp4HI	GCNGC	3 cut(s)	245, 1050, 1300
FspBI	CTAG	6 cut(s)	527, 950, 977, 1025, 2175, 2221
GlaI	GCGC	1 cut(s)	1720
GluI	GCNGC	3 cut(s)	245, 1050, 1300
HaeIII	GGCC	7 cut(s)	596, 948, 1133, 1308, 1573, 1863, 2216
HapII	CCGG	3 cut(s)	315, 1134, 2019
HgaI	GACGC	2 cut(s)	1833, 2152
HhaI	GCGC	1 cut(s)	1721
Hin6I	GCGC	1 cut(s)	1719
HinP1I	GCGC	1 cut(s)	1719
HincII	GTYRAC	1 cut(s)	1654
HindII	GTYRAC	1 cut(s)	1654
HindIII	AAGCTT	1 cut(s)	1538
HinfI	GANTC	8 cut(s)	283, 318, 434, 800, 973, 1337, 1823, 1874
HpaII	CCGG	3 cut(s)	315, 1134, 2019
HphI	GGTGA	3 cut(s)	1634, 1920, 1931
Hpy166II	GTNNAC	7 cut(s)	215, 322, 817, 1145, 1483, 1654, 1928
Hpy188I	TCNGA	3 cut(s)	518, 996, 2047
Hpy188III	TCNNGA	8 cut(s)	80, 287, 797, 922, 1025, 1421, 1640, 1753
Hpy8I	GTNNAC	7 cut(s)	215, 322, 817, 1145, 1483, 1654, 1928
Hpy99I	CGWCG	2 cut(s)	720, 2146
HpyAV	CCTTC	9 cut(s)	412, 513, 661, 872, 1030, 1625, 1722, 1992, 2059
HpyCH4III	ACNGT	7 cut(s)	154, 363, 470, 866, 964, 1588, 1885
HpyCH4IV	ACGT	1 cut(s)	1402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	574, 780, 1305, 2217
HpyF3I	CTNAG	4 cut(s)	617, 1568, 1706, 1722
HpySE526I	ACGT	1 cut(s)	1402
HspAI	GCGC	1 cut(s)	1719
KpnI	GGTACC	1 cut(s)	1364
Kzo9I	GATC	3 cut(s)	76, 201, 1222
LmnI	GCTCC	3 cut(s)	1634, 1786, 1978
Lsp1109I	GCAGC	2 cut(s)	231, 1061
LweI	GCATC	8 cut(s)	376, 754, 1000, 1099, 1147, 1384, 1414, 1519
MaeI	CTAG	6 cut(s)	527, 950, 977, 1025, 2175, 2221
MaeII	ACGT	1 cut(s)	1402
MaeIII	GTNAC	4 cut(s)	139, 341, 1054, 2008
MalI	GATC	3 cut(s)	78, 203, 1224
MboI	GATC	3 cut(s)	76, 201, 1222
MflI	RGATCY	3 cut(s)	76, 201, 1222
MhlI	GDGCHC	1 cut(s)	1639
MlsI	TGGCCA	1 cut(s)	596
MluNI	TGGCCA	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	327, 809
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	596
Mph1103I	ATGCAT	3 cut(s)	1114, 1162, 1294
MroXI	GAANNNNTTC	1 cut(s)	1323
MscI	TGGCCA	1 cut(s)	596
MseI	TTAA	9 cut(s)	50, 126, 159, 1353, 1464, 1559, 1890, 1953, 2109
MslI	CAYNNNNRTG	2 cut(s)	932, 1209
Msp20I	TGGCCA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	1052
MspI	CCGG	3 cut(s)	315, 1134, 2019
MspR9I	CCNGG	1 cut(s)	1154
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	1154
MwoI	GCNNNNNNNGC	4 cut(s)	574, 780, 1305, 2217
NdeI	CATATG	1 cut(s)	1378
NdeII	GATC	3 cut(s)	76, 201, 1222
NlaIV	GGNNCC	3 cut(s)	532, 1362, 1980
NmuCI	GTSAC	2 cut(s)	139, 1054
NsiI	ATGCAT	3 cut(s)	1114, 1162, 1294
NspI	RCATGY	5 cut(s)	189, 546, 810, 1481, 1909
PaeI	GCATGC	1 cut(s)	810
PceI	AGGCCT	1 cut(s)	1573
PciI	ACATGT	1 cut(s)	1477
PctI	GAATGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	1323
PfeI	GAWTC	6 cut(s)	283, 434, 973, 1337, 1823, 1874
PfoI	TCCNGGA	1 cut(s)	1152
PinAI	ACCGGT	1 cut(s)	2018
PkrI	GCNGC	3 cut(s)	246, 1051, 1301
PleI	GAGTC	2 cut(s)	326, 808
PpsI	GAGTC	2 cut(s)	326, 808
Ppu21I	YACGTR	1 cut(s)	1403
PscI	ACATGT	1 cut(s)	1477
PshBI	ATTAAT	3 cut(s)	126, 159, 1353
PsiI	TTATAA	7 cut(s)	549, 704, 1077, 1088, 1275, 1286, 1598
Psp124BI	GAGCTC	1 cut(s)	1639
Psp6I	CCWGG	1 cut(s)	1152
PspGI	CCWGG	1 cut(s)	1152
PspN4I	GGNNCC	3 cut(s)	532, 1362, 1980
PspPI	GGNCC	1 cut(s)	2214
PsrI	GAACNNNNNNTAC	2 cut(s)	547, 579
PstI	CTGCAG	1 cut(s)	1051
PsuI	RGATCY	3 cut(s)	76, 201, 1222
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	7 cut(s)	241, 442, 451, 467, 818, 1362, 1672
RsaNI	GTAC	7 cut(s)	240, 441, 450, 466, 817, 1361, 1671
RseI	CAYNNNNRTG	2 cut(s)	932, 1209
SacI	GAGCTC	1 cut(s)	1639
SaqAI	TTAA	9 cut(s)	50, 126, 159, 1353, 1464, 1559, 1890, 1953, 2109
SatI	GCNGC	3 cut(s)	245, 1050, 1300
Sau3AI	GATC	3 cut(s)	76, 201, 1222
Sau96I	GGNCC	1 cut(s)	2214
SchI	GAGTC	2 cut(s)	327, 809
ScrFI	CCNGG	1 cut(s)	1154
SduI	GDGCHC	1 cut(s)	1639
SfaNI	GCATC	8 cut(s)	376, 754, 1000, 1099, 1147, 1384, 1414, 1519
SfcI	CTRYAG	1 cut(s)	1047
SgrAI	CRCCGGYG	1 cut(s)	2018
SmiMI	CAYNNNNRTG	2 cut(s)	932, 1209
SmlI	CTYRAG	4 cut(s)	497, 1454, 1658, 1753
SmoI	CTYRAG	4 cut(s)	497, 1454, 1658, 1753
SnaBI	TACGTA	1 cut(s)	1403
SphI	GCATGC	1 cut(s)	810
SseBI	AGGCCT	1 cut(s)	1573
SsiI	CCGC	3 cut(s)	1300, 2072, 2085
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	6 cut(s)	527, 950, 977, 1025, 2175, 2221
SstI	GAGCTC	1 cut(s)	1639
StuI	AGGCCT	1 cut(s)	1573
StyD4I	CCNGG	1 cut(s)	1152
StyI	CCWWGG	2 cut(s)	1303, 1428
TaaI	ACNGT	7 cut(s)	154, 363, 470, 866, 964, 1588, 1885
TaiI	ACGT	1 cut(s)	1405
TaqI	TCGA	6 cut(s)	81, 639, 715, 1490, 1815, 1869
TatI	WGTACW	3 cut(s)	440, 449, 816
TauI	GCSGC	1 cut(s)	1302
TfiI	GAWTC	6 cut(s)	283, 434, 973, 1337, 1823, 1874
Tru1I	TTAA	9 cut(s)	50, 126, 159, 1353, 1464, 1559, 1890, 1953, 2109
Tru9I	TTAA	9 cut(s)	50, 126, 159, 1353, 1464, 1559, 1890, 1953, 2109
TscAI	CASTG	4 cut(s)	366, 625, 1216, 1591
TseFI	GTSAC	2 cut(s)	139, 1054
TseI	GCWGC	2 cut(s)	244, 1049
Tsp45I	GTSAC	2 cut(s)	139, 1054
TspGWI	ACGGA	3 cut(s)	526, 733, 1382
TspRI	CASTG	4 cut(s)	366, 625, 1216, 1591
VspI	ATTAAT	3 cut(s)	126, 159, 1353
XagI	CCTNNNNNAGG	1 cut(s)	1920
XapI	RAATTY	6 cut(s)	32, 173, 706, 1580, 1643, 2002
XbaI	TCTAGA	1 cut(s)	1024
XceI	RCATGY	5 cut(s)	189, 546, 810, 1481, 1909
XmiI	GTMKAC	3 cut(s)	214, 321, 1144
XmnI	GAANNNNTTC	1 cut(s)	1323
XspI	CTAG	6 cut(s)	527, 950, 977, 1025, 2175, 2221
Zsp2I	ATGCAT	3 cut(s)	1114, 1162, 1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.