Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008661

Physical Location & Seq

Genomic Coordinates Forward (+)

6784163 .. 6790254

Gene Structure 6092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3246 bp

ATGCCTAGGCTTTCCTCTTGGCTCTTCCACACCAAACCCAGCCGATCCTTGTCTTCATCATCTTCATCTAACAATCCTCCAAAACATTCACCTCTTCAAACCCTACTCAAACGTGGCTTCACTCCTACTCTCAATTCCATCATCCAATTCCTTCTCTTCCTTTCACACTCTCGCAGATTCAACACAGTTCTCAACTTCTTCTCTCAAATGGAGTCCAACCAAATCAAAGGCAACTCCCAAACTCGCTCAATTCTCACACGGGCTCTCCTAAAACTGCACAAATATGAAGAAGCAGAGCATTTCATGAGGACCCAGATGGCCAAAGCTTCAAACTTTCCGAGGAATCGCATGTGGGACACTATCAACAAGAAAGACCCAGATAAGGCTTTGTTGGTATTAAGGGATTGCTTGAGGAAATATGGTACCTTTCCTTCTTCTTTCACTTTATGCTCGTTAATCTATAGATTTAGCTCTATGGGGGATATGAGTAGGGCTATTGAGGTTGTGGAGTTGATGACTGATGAGAATATCAATTACCCATTTAACAATTTTGTTTGTAGTTCAGTGATTTCTGGGTTTTGTAAGATTGGGAAACCAGAAATTGCTGTTGAGTTTTTTGAGAATGCCGTAAAGGCTGGAGCTTTTCAGCCTAATATAGTGGTGTATACAGCACTTGTTGGTGCTCTTTGTAAATTAGGAAGAGTTAGTGAGGTTTGTGATTTAGTTTGTAAAATGGAGAAGGAAGGATTGGCATTCGATGTTGTGTTCTATAGTAGTTGGATTTGTGGTTATATTTCGGAAGGGATTCTAATGGAGGTGTTTAGGAAGAAGAGACACATGTTAGATAAAGGCATCAGACCAGATATAGTTAGCTATACTATACTTATAGATGGGTTCTCGAAGCTTGGAGATGTGGAAAAGGCAAGCGGTTTATTGAAAAAAATGAGGGAAGATGGGCTAGAACCCAGTTTGATAACATACACTGCCATCATGTTGGGATTTTGCAAGAATGGAAAATTGGAGGAGGCGTGTGCTATTTTCAAGATGGTTGAAGATTTGGGAATTGAAGTTGATGAATTTATGTATGCAACTTTAATTAATGGGTTTTGCATGAGGGGGGATCTCGATGGTGTTTTTCGTCTGCTAGATGAAATGGAACAGAAGGGGATAAACCCAAGCATTGTTACATATAATACAGTAATTAATGGATTATGCAAATTTGGGAGGACTGCCGAGGCTGAGAAGATCTCAAAAGGCGTATCTGGAGATACCATTACATATGGTACATTGCTACACGGGTATATTGAGGAAGAAAATATATCTGGGATTTTGGAAACCAAGAGGAGATTGGAGGAAGCTGGAGTGTTTATAGATGTTGTCATGTGTAATATACTTATTAAAGCACTATTCATGGTGGGGGCGTTTGAGGATGCTTACCTACTGTACAAGGGAATGCCAGAGAAGGGTTTGACTGCAAATTCCTTTACATACTGTACAATGATTGATGGGTACTGTAAAGTTGGTAGAATTGATGAGGCACTGGAGATATTTGATGAATTTAGAAGGACATCACTTTCGTCAGTTGCATGTTATAATTGTATTATAAATTGGCTCTGCAAGCAGGGCATGGTAGATATGGCCATGGAGGTGTTTATTGAACTTGACCAGAAAAGCTTAACTTTGGATGAAGGTATCTGCAAAATGCTTCTGAAGGCAACTTATAAACAAAAAAGCGTGACTGGAGTTTTAGACTTTGTTCTTAGAGTGGAAAATTTGAGTCCAGGTATATATGATGTTATCAGCAATGGTGCGATCAGTTTCCTGTGCAAGAGAGGGTTTCATGATTCTGCATTTGAAGTGTACGCAGTGATGAGAAGGAAAGGGTCAGTTGCTACGAGAAAAACTTACTATTCAATCTTGGAAGGGCTACTTAATGATGGAAAAGAGTGGCTAGCTCTGCCTATTTTAAACATCTTCCTGAAAGAATATGGATTAGTTGAACCTAAAGTAAGCCAGATCCTTGCTTACCACATGTGCCTGAAGGATGTCAATGATGCTCTCCGGTTTTTAGACAAGATCAAGGACAGACATACAGCCATTACCTTGCCTATTTCTCTGTTCAAGACACTTATAAAGAGGGGTAAAATTTTGGCTGCATATCAGCTTTTCATGGCGGCTGAAGATAGTGTACCCGTTCTAGATGCATTTGATTATTCGCTCATGGTTGATGGCCTTTGCAAGGGAGGATATATTAGTGAGGCACTAGATCTCTGTGGTTTTGCTAAAACTAAGGGAATCACCTTGAATATTGTCACTTATAATTCAGTTATAAATGGTCTGTGCCGCCAAGGTCACCTTGTTGATGCATTTCGGCTATTTGATTCATTGGAGATAATTAATTTGGTACCGTCAGAAATCACATATGCTATATTGATTGATGCCCTACGTAGAGAGGGGTTTCTGCTTGATGCAAAGCAATTATTTGAAAAAATGGTCGTCAAGGGGTTTAAACCAAATACACATGTATATAACTCTATTATTGATGGTTTTTGCAAGATTGGACATATGGAAGATGCCTTGAACCTTCTTTGTGAATTGGAGATGAAAAATCTTAGGCCTGATGCATTCACTGTTAGTATTGTCATCAATGGCTTTTGCCAAAAGGGTGATATGGAAGGGGCCCTAAATTTCTTTATTGAGTTCCAAAGAAATGGCACATCACCTGATTTTTTGGGTTTCTTATATTTAATGAGAGGTTTATGTGCCAAGGGAAGGATGGAAGAAGCCAGAAGTATCTTGAGAAAAATGCTTCAGTCTCAGTCTGTTGTGGAGCTTATAAATAAAGTTGACGTTGAGCTCAAAACAGATTCATTGGAAAGTTTTCTTGTTTCACTATGTGAGCAAGGAAGTATCCAAGAAGCGGTGACTGTGCTTAATGAAATCGCGTCCATGTTTTTCCCCATTCGGGATTCATCTCATAAGCTACAGAAGCCTTGTGACAGAGAGGCTCCGAAAACAGTTGCCCCAGAATCTGTGCCTTCCATCAATGCAGTTTTGGACATGCAGTGTTCTGGTCAGAAGAAAGTAGAGAAGGTGGCAAAAACTTATGATGTTATAGGGAGGAGGTCTCAGTTTCATGACTTCAACTATTACTATAAGGAAATTGCTTCACTCTGTTCGATAGGGGAGCTGCAAAAGGCTAGTCAATTAGTAAAGGACATAGTTTCTAATATGGGCAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1082

Amino Acids

121.72

Weight (kDa)

7.37

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	217 - 263	3.1e-07	PPR repeat family
PPR_2	PF13041	253 - 301	4.3e-08	PPR repeat family
PPR_long	PF17177	270 - 366	3.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	277 - 332	4.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	283 - 316	5.9e-09	PPR repeat
PPR_2	PF13041	287 - 336	6.1e-14	PPR repeat family
PPR	PF01535	290 - 320	4.6e-08	PPR repeat
PPR_1	PF12854	318 - 348	1.6e-07	PPR repeat
PPR_2	PF13041	322 - 370	3.5e-10	PPR repeat family
TPR_24	PF23276	337 - 483	3.1e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	346 - 402	9.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	354 - 386	4e-08	PPR repeat
PPR_2	PF13041	358 - 406	1.1e-15	PPR repeat family
PPR	PF01535	361 - 390	7.2e-06	PPR repeat
PPR_1	PF12854	388 - 415	1.1e-09	PPR repeat
PPR_2	PF13041	458 - 506	7.9e-13	PPR repeat family
PPR_1	PF12854	488 - 519	1.8e-11	PPR repeat
PPR	PF01535	495 - 522	3.4e-08	PPR repeat
PPR_2	PF13041	527 - 563	3.7e-07	PPR repeat family
PPR_2	PF13041	738 - 782	8.9e-08	PPR repeat family
PPR_1	PF12854	764 - 795	1.8e-11	PPR repeat
PPR_2	PF13041	769 - 815	6.5e-13	PPR repeat family
PPR_2	PF13041	803 - 852	6.3e-11	PPR repeat family
PPR_1	PF12854	834 - 866	1.5e-09	PPR repeat
PPR_2	PF13041	838 - 887	1.3e-15	PPR repeat family
PPR_1	PF12854	869 - 898	8.5e-07	PPR repeat
PPR_2	PF13041	880 - 921	1.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57250
fragaria_vesca	FvH4_4g07420
malus_domestica	MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1
prunus_persica	Prupe.1G077100_v2.0.a1
pyrus_communis	pycom13g21510 pycom16g21000
rosa_chinensis	RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881
rosa_laevigata	RLG00000009236
rosa_multiflora	Rmu_sc0014676.1_g000003
rosa_roxburghii	Rroxscaffold_5G00344750
rosa_rugosa	Rorug04G0019700
rosa_samantha	Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000
rosa_wichuraiana	Rw4G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	7 cut(s)	1593, 1604, 1722, 2132, 2319, 2330, 2837
Acc65I	GGTACC	2 cut(s)	422, 2404
AccB1I	GGYRCC	2 cut(s)	422, 2404
AccI	GTMKAC	1 cut(s)	665
AccII	CGCG	1 cut(s)	2945
AciI	CCGC	4 cut(s)	927, 2174, 2344, 2921
AclWI	GGATC	3 cut(s)	39, 1128, 2011
AcoI	YGGCCR	2 cut(s)	318, 1638
AcsI	RAATTY	7 cut(s)	1076, 1217, 1477, 1556, 1771, 2145, 2686
AcuI	CTGAAG	4 cut(s)	1730, 2060, 2199, 2795
AdeI	CACNNNGTG	1 cut(s)	2897
AfaI	GTAC	8 cut(s)	424, 1285, 1445, 1495, 1511, 1862, 2190, 2406
AfiI	CCNNNNNNNGG	6 cut(s)	382, 1463, 2239, 2772, 2920, 2965
AflIII	ACRYGT	3 cut(s)	837, 2031, 2521
AjnI	CCWGG	1 cut(s)	1780
AjuI	GAANNNNNNNTTGG	4 cut(s)	731, 763, 1001, 1033
Alw21I	GWGCWC	2 cut(s)	685, 2859
Alw26I	GTCTC	3 cut(s)	826, 2820, 3132
AlwI	GGATC	3 cut(s)	39, 1128, 2011
AlwNI	CAGNNNCTG	1 cut(s)	3032
AoxI	GGCC	5 cut(s)	318, 1638, 2230, 2615, 2679
ApaI	GGGCCC	1 cut(s)	2683
ApeKI	GCWGC	2 cut(s)	2153, 3190
ApoI	RAATTY	7 cut(s)	1076, 1217, 1477, 1556, 1771, 2145, 2686
ArsI	GACNNNNNNTTYG	4 cut(s)	1558, 1590, 3187, 3219
AseI	ATTAAT	3 cut(s)	1098, 1203, 2397
Asp700I	GAANNNNTTC	2 cut(s)	804, 2880
Asp718I	GGTACC	2 cut(s)	422, 2404
AspA2I	CCTAGG	1 cut(s)	5
AspS9I	GGNCC	3 cut(s)	309, 2679, 2680
AsuHPI	GGTGA	6 cut(s)	81, 2290, 2345, 2678, 2712, 2935
AsuNHI	GCTAGC	1 cut(s)	1951
AvaII	GGWCC	1 cut(s)	309
AvrII	CCTAGG	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	2683
BalI	TGGCCA	2 cut(s)	320, 1640
BanI	GGYRCC	2 cut(s)	422, 2404
BanII	GRGCYC	3 cut(s)	265, 2683, 2859
BarI	GAAGNNNNNNTAC	4 cut(s)	415, 447, 2172, 2204
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	685, 2859
BbvI	GCAGC	2 cut(s)	2140, 3177
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	1782
BciVI	GTATCC	1 cut(s)	2921
BcoDI	GTCTC	3 cut(s)	826, 2820, 3132
BfaI	CTAG	7 cut(s)	6, 959, 1145, 1952, 2198, 2264, 3201
BfmI	CTRYAG	3 cut(s)	460, 769, 2984
BfuI	GTATCC	1 cut(s)	2921
BglI	GCCNNNNNGGC	1 cut(s)	632
BglII	AGATCT	2 cut(s)	1245, 2266
BisI	GCNGC	4 cut(s)	2154, 2175, 2344, 3191
BlnI	CCTAGG	1 cut(s)	5
BlsI	GCNGC	4 cut(s)	2155, 2176, 2345, 3192
Bme1390I	CCNGG	1 cut(s)	1782
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	3 cut(s)	309, 2679, 2680
BmiI	GGNNCC	6 cut(s)	311, 424, 2406, 2680, 2681, 3009
BmrFI	CCNGG	1 cut(s)	1782
BmrI	ACTGGG	1 cut(s)	960
BmsI	GCATC	9 cut(s)	861, 1420, 2044, 2191, 2353, 2428, 2458, 2563, 2611
BmtI	GCTAGC	1 cut(s)	1955
BmuI	ACTGGG	1 cut(s)	960
BpiI	GAAGAC	1 cut(s)	45
BplI	GAGNNNNNCTC	4 cut(s)	1232, 1264, 3112, 3144
BpmI	CTGGAG	5 cut(s)	657, 1284, 1380, 1562, 1761
BpuEI	CTTGAG	2 cut(s)	430, 2818
BsaAI	YACGTR	1 cut(s)	2447
BsaI	GGTCTC	1 cut(s)	3132
BsaJI	CCNNGG	6 cut(s)	5, 338, 1233, 1641, 2347, 2766
BsaWI	WCCGGW	1 cut(s)	2061
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 1013, 1043
Bsc4I	CCNNNNNNNGG	6 cut(s)	382, 1463, 2239, 2772, 2920, 2965
Bse1I	ACTGG	3 cut(s)	966, 1545, 1744
Bse3DI	GCAATG	2 cut(s)	1286, 1810
BseBI	CCWGG	1 cut(s)	1782
BseDI	CCNNGG	6 cut(s)	5, 338, 1233, 1641, 2347, 2766
BseGI	GGATG	5 cut(s)	141, 1435, 1690, 2050, 2781
BseLI	CCNNNNNNNGG	6 cut(s)	382, 1463, 2239, 2772, 2920, 2965
BseMI	GCAATG	2 cut(s)	1286, 1810
BseMII	CTCAG	3 cut(s)	1230, 2831, 3143
BseNI	ACTGG	3 cut(s)	966, 1545, 1744
BseRI	GAGGAG	3 cut(s)	1037, 1357, 3136
BseSI	GKGCMC	1 cut(s)	2683
BseXI	GCAGC	2 cut(s)	2140, 3177
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	2945
BshFI	GGCC	5 cut(s)	320, 1640, 2232, 2617, 2681
BshNI	GGYRCC	2 cut(s)	422, 2404
BsiHKAI	GWGCWC	2 cut(s)	685, 2859
BsiSI	CCGG	1 cut(s)	2062
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	6 cut(s)	382, 1463, 2239, 2772, 2920, 2965
BsmAI	GTCTC	3 cut(s)	826, 2820, 3132
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	4 cut(s)	628, 752, 1458, 2624
BsnI	GGCC	5 cut(s)	320, 1640, 2232, 2617, 2681
Bso31I	GGTCTC	1 cut(s)	3132
Bsp120I	GGGCCC	1 cut(s)	2679
Bsp1286I	GDGCHC	4 cut(s)	265, 685, 2683, 2859
Bsp1407I	TGTACA	2 cut(s)	1443, 1493
Bsp143I	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
Bsp19I	CCATGG	1 cut(s)	1641
BspACI	CCGC	4 cut(s)	927, 2174, 2344, 2921
BspANI	GGCC	5 cut(s)	320, 1640, 2232, 2617, 2681
BspCNI	CTCAG	3 cut(s)	1231, 2830, 3142
BspFNI	CGCG	1 cut(s)	2945
BspHI	TCATGA	3 cut(s)	303, 1840, 3136
BspLI	GGNNCC	6 cut(s)	311, 424, 2406, 2680, 2681, 3009
BspOI	GCTAGC	1 cut(s)	1955
BspPI	GGATC	3 cut(s)	39, 1128, 2011
BspQI	GCTCTTC	1 cut(s)	29
BspT107I	GGYRCC	2 cut(s)	422, 2404
BspTNI	GGTCTC	1 cut(s)	3132
BsrDI	GCAATG	2 cut(s)	1286, 1810
BsrGI	TGTACA	2 cut(s)	1443, 1493
BsrI	ACTGG	3 cut(s)	966, 1545, 1744
BssECI	CCNNGG	6 cut(s)	5, 338, 1233, 1641, 2347, 2766
BssMI	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
BssNAI	GTATAC	1 cut(s)	666
BssT1I	CCWWGG	4 cut(s)	5, 1641, 2347, 2766
Bst1107I	GTATAC	1 cut(s)	666
Bst2UI	CCWGG	1 cut(s)	1782
Bst4CI	ACNGT	9 cut(s)	187, 1198, 1443, 1493, 1514, 2409, 2632, 2929, 3019
Bst6I	CTCTTC	5 cut(s)	29, 99, 161, 694, 824
BstAUI	TGTACA	2 cut(s)	1443, 1493
BstBAI	YACGTR	1 cut(s)	2447
BstC8I	GCNNGC	3 cut(s)	925, 1619, 1953
BstDEI	CTNAG	6 cut(s)	1239, 1760, 2289, 2612, 2817, 3129
BstDSI	CCRYGG	1 cut(s)	1641
BstEII	GGTNACC	1 cut(s)	2351
BstENI	CCTNNNNNAGG	1 cut(s)	2237
BstF5I	GGATG	5 cut(s)	141, 1435, 1690, 2050, 2781
BstFNI	CGCG	1 cut(s)	2945
BstKTI	GATC	7 cut(s)	47, 1123, 1248, 1815, 2019, 2079, 2269
BstMAI	GTCTC	3 cut(s)	826, 2820, 3132
BstMBI	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
BstMWI	GCNNNNNNNGC	5 cut(s)	632, 1618, 1623, 1957, 2989
BstNI	CCWGG	1 cut(s)	1782
BstNSI	RCATGY	6 cut(s)	352, 841, 1590, 2035, 2525, 3064
BstPI	GGTNACC	1 cut(s)	2351
BstSCI	CCNGG	1 cut(s)	1780
BstSFI	CTRYAG	3 cut(s)	460, 769, 2984
BstSLI	GKGCMC	1 cut(s)	2683
BstSNI	TACGTA	1 cut(s)	2447
BstUI	CGCG	1 cut(s)	2945
BstV1I	GCAGC	2 cut(s)	2140, 3177
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	4 cut(s)	1120, 1245, 2016, 2266
BstXI	CCANNNNNNTGG	2 cut(s)	994, 2711
BstYI	RGATCY	4 cut(s)	1120, 1245, 2016, 2266
BstZ17I	GTATAC	1 cut(s)	666
BsuI	GTATCC	1 cut(s)	2921
BsuRI	GGCC	5 cut(s)	320, 1640, 2232, 2617, 2681
BtgI	CCRYGG	1 cut(s)	1641
BtsCI	GGATG	5 cut(s)	141, 1435, 1690, 2050, 2781
BtsI	GCAGTG	3 cut(s)	981, 1872, 3071
BtsIMutI	CAGTG	6 cut(s)	570, 981, 1538, 1872, 2628, 3071
Cac8I	GCNNGC	3 cut(s)	925, 1619, 1953
CaiI	CAGNNNCTG	1 cut(s)	3032
CciI	TCATGA	3 cut(s)	303, 1840, 3136
Cfr13I	GGNCC	3 cut(s)	309, 2679, 2680
CseI	GACGC	1 cut(s)	2934
Csp6I	GTAC	8 cut(s)	423, 1284, 1444, 1494, 1510, 1861, 2189, 2405
CviQI	GTAC	8 cut(s)	423, 1284, 1444, 1494, 1510, 1861, 2189, 2405
DdeI	CTNAG	6 cut(s)	1239, 1760, 2289, 2612, 2817, 3129
DpnI	GATC	7 cut(s)	46, 1122, 1247, 1814, 2018, 2078, 2268
DpnII	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
DraI	TTTAAA	2 cut(s)	1968, 2509
DraIII	CACNNNGTG	1 cut(s)	2897
EaeI	YGGCCR	2 cut(s)	318, 1638
Eam1104I	CTCTTC	5 cut(s)	29, 99, 161, 694, 824
EarI	CTCTTC	5 cut(s)	29, 99, 161, 694, 824
Ecl136II	GAGCTC	1 cut(s)	2857
Eco105I	TACGTA	1 cut(s)	2447
Eco130I	CCWWGG	4 cut(s)	5, 1641, 2347, 2766
Eco147I	AGGCCT	1 cut(s)	2617
Eco24I	GRGCYC	3 cut(s)	265, 2683, 2859
Eco31I	GGTCTC	1 cut(s)	3132
Eco47I	GGWCC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	2857
Eco57I	CTGAAG	4 cut(s)	1730, 2060, 2199, 2795
Eco91I	GGTNACC	1 cut(s)	2351
EcoICRI	GAGCTC	1 cut(s)	2857
EcoNI	CCTNNNNNAGG	1 cut(s)	2237
EcoO109I	RGGNCCY	3 cut(s)	309, 2679, 2680
EcoO65I	GGTNACC	1 cut(s)	2351
EcoRII	CCWGG	1 cut(s)	1780
EcoT14I	CCWWGG	4 cut(s)	5, 1641, 2347, 2766
EcoT22I	ATGCAT	3 cut(s)	2206, 2368, 2626
EcoT38I	GRGCYC	3 cut(s)	265, 2683, 2859
ErhI	CCWWGG	4 cut(s)	5, 1641, 2347, 2766
FalI	AAGNNNNNCTT	6 cut(s)	1663, 1695, 1914, 1946, 2340, 2372
FaqI	GGGAC	1 cut(s)	368
FauNDI	CATATG	3 cut(s)	1279, 2422, 2565
FblI	GTMKAC	1 cut(s)	665
Fnu4HI	GCNGC	4 cut(s)	2154, 2175, 2344, 3191
FokI	GGATG	5 cut(s)	128, 1442, 1697, 2057, 2788
FriOI	GRGCYC	3 cut(s)	265, 2683, 2859
Fsp4HI	GCNGC	4 cut(s)	2154, 2175, 2344, 3191
FspBI	CTAG	7 cut(s)	6, 959, 1145, 1952, 2198, 2264, 3201
GluI	GCNGC	4 cut(s)	2154, 2175, 2344, 3191
GsaI	CCCAGC	1 cut(s)	42
GsuI	CTGGAG	5 cut(s)	657, 1284, 1380, 1562, 1761
HaeIII	GGCC	5 cut(s)	320, 1640, 2232, 2617, 2681
HapII	CCGG	1 cut(s)	2062
HgaI	GACGC	1 cut(s)	2934
HincII	GTYRAC	1 cut(s)	2848
HindII	GTYRAC	1 cut(s)	2848
HindIII	AAGCTT	3 cut(s)	324, 902, 1672
HpaII	CCGG	1 cut(s)	2062
HphI	GGTGA	6 cut(s)	81, 2290, 2345, 2678, 2712, 2935
Hpy166II	GTNNAC	4 cut(s)	666, 1861, 2189, 2848
Hpy188I	TCNGA	7 cut(s)	339, 799, 857, 1710, 2413, 3012, 3078
Hpy8I	GTNNAC	4 cut(s)	666, 1861, 2189, 2848
HpyCH4III	ACNGT	9 cut(s)	187, 1198, 1443, 1493, 1514, 2409, 2632, 2929, 3019
HpyCH4IV	ACGT	3 cut(s)	112, 2446, 2850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	632, 1618, 1623, 1957, 2989
HpyF3I	CTNAG	6 cut(s)	1239, 1760, 2289, 2612, 2817, 3129
HpySE526I	ACGT	3 cut(s)	112, 2446, 2850
KpnI	GGTACC	2 cut(s)	426, 2408
Kzo9I	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	638, 2830, 3013, 3187
Lsp1109I	GCAGC	2 cut(s)	2140, 3177
LweI	GCATC	9 cut(s)	861, 1420, 2044, 2191, 2353, 2428, 2458, 2563, 2611
MaeI	CTAG	7 cut(s)	6, 959, 1145, 1952, 2198, 2264, 3201
MaeII	ACGT	3 cut(s)	112, 2446, 2850
MaeIII	GTNAC	6 cut(s)	1183, 1735, 2311, 2351, 2923, 2996
MalI	GATC	7 cut(s)	46, 1122, 1247, 1814, 2018, 2078, 2268
MboI	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
MflI	RGATCY	4 cut(s)	1120, 1245, 2016, 2266
MhlI	GDGCHC	4 cut(s)	265, 685, 2683, 2859
MlsI	TGGCCA	2 cut(s)	320, 1640
MluNI	TGGCCA	2 cut(s)	320, 1640
MlyI	GAGTC	2 cut(s)	221, 1786
MmeI	TCCRAC	2 cut(s)	240, 758
Mox20I	TGGCCA	2 cut(s)	320, 1640
Mph1103I	ATGCAT	3 cut(s)	2206, 2368, 2626
MroXI	GAANNNNTTC	2 cut(s)	804, 2880
MscI	TGGCCA	2 cut(s)	320, 1640
MslI	CAYNNNNRTG	2 cut(s)	282, 1646
Msp20I	TGGCCA	2 cut(s)	320, 1640
MspI	CCGG	1 cut(s)	2062
MspR9I	CCNGG	1 cut(s)	1782
MssI	GTTTAAAC	1 cut(s)	2509
Mva1269I	GAATGC	4 cut(s)	628, 752, 1458, 2624
MvaI	CCWGG	1 cut(s)	1782
MvnI	CGCG	1 cut(s)	2945
MwoI	GCNNNNNNNGC	5 cut(s)	632, 1618, 1623, 1957, 2989
NcoI	CCATGG	1 cut(s)	1641
NdeI	CATATG	3 cut(s)	1279, 2422, 2565
NdeII	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
NheI	GCTAGC	1 cut(s)	1951
NlaIV	GGNNCC	6 cut(s)	311, 424, 2406, 2680, 2681, 3009
NmeAIII	GCCGAG	1 cut(s)	1258
NmuCI	GTSAC	5 cut(s)	1735, 2311, 2351, 2923, 2996
NsiI	ATGCAT	3 cut(s)	2206, 2368, 2626
NspI	RCATGY	6 cut(s)	352, 841, 1590, 2035, 2525, 3064
PacI	TTAATTAA	1 cut(s)	1098
PagI	TCATGA	3 cut(s)	303, 1840, 3136
PceI	AGGCCT	1 cut(s)	2617
PciI	ACATGT	3 cut(s)	837, 2031, 2521
PciSI	GCTCTTC	1 cut(s)	29
PctI	GAATGC	4 cut(s)	628, 752, 1458, 2624
PdmI	GAANNNNTTC	2 cut(s)	804, 2880
PfeI	GAWTC	9 cut(s)	177, 343, 805, 1844, 2295, 2381, 2867, 2969, 3029
PkrI	GCNGC	4 cut(s)	2155, 2176, 2345, 3192
PleI	GAGTC	2 cut(s)	220, 1785
PmeI	GTTTAAAC	1 cut(s)	2509
PpsI	GAGTC	2 cut(s)	220, 1785
Ppu21I	YACGTR	1 cut(s)	2447
PpuMI	RGGWCCY	1 cut(s)	309
PscI	ACATGT	3 cut(s)	837, 2031, 2521
PshBI	ATTAAT	3 cut(s)	1098, 1203, 2397
PsiI	TTATAA	7 cut(s)	1593, 1604, 1722, 2132, 2319, 2330, 2837
Psp124BI	GAGCTC	1 cut(s)	2859
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	1780
PspEI	GGTNACC	1 cut(s)	2351
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	1780
PspN4I	GGNNCC	6 cut(s)	311, 424, 2406, 2680, 2681, 3009
PspOMI	GGGCCC	1 cut(s)	2679
PspPI	GGNCC	3 cut(s)	309, 2679, 2680
PspPPI	RGGWCCY	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	3032
PsuI	RGATCY	4 cut(s)	1120, 1245, 2016, 2266
RsaI	GTAC	8 cut(s)	424, 1285, 1445, 1495, 1511, 1862, 2190, 2406
RsaNI	GTAC	8 cut(s)	423, 1284, 1444, 1494, 1510, 1861, 2189, 2405
RseI	CAYNNNNRTG	2 cut(s)	282, 1646
SacI	GAGCTC	1 cut(s)	2859
SapI	GCTCTTC	1 cut(s)	29
SatI	GCNGC	4 cut(s)	2154, 2175, 2344, 3191
Sau3AI	GATC	7 cut(s)	44, 1120, 1245, 1812, 2016, 2076, 2266
Sau96I	GGNCC	3 cut(s)	309, 2679, 2680
SchI	GAGTC	2 cut(s)	221, 1786
ScrFI	CCNGG	1 cut(s)	1782
SduI	GDGCHC	4 cut(s)	265, 685, 2683, 2859
SfaNI	GCATC	9 cut(s)	861, 1420, 2044, 2191, 2353, 2428, 2458, 2563, 2611
SfcI	CTRYAG	3 cut(s)	460, 769, 2984
SinI	GGWCC	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	282, 1646
SmlI	CTYRAG	2 cut(s)	409, 2797
SmoI	CTYRAG	2 cut(s)	409, 2797
SnaBI	TACGTA	1 cut(s)	2447
SseBI	AGGCCT	1 cut(s)	2617
SsiI	CCGC	4 cut(s)	927, 2174, 2344, 2921
SspI	AATATT	1 cut(s)	2308
SspMI	CTAG	7 cut(s)	6, 959, 1145, 1952, 2198, 2264, 3201
SstI	GAGCTC	1 cut(s)	2859
StuI	AGGCCT	1 cut(s)	2617
StyD4I	CCNGG	1 cut(s)	1780
StyI	CCWWGG	4 cut(s)	5, 1641, 2347, 2766
TaaI	ACNGT	9 cut(s)	187, 1198, 1443, 1493, 1514, 2409, 2632, 2929, 3019
TaiI	ACGT	3 cut(s)	115, 2449, 2853
TaqI	TCGA	4 cut(s)	756, 899, 1125, 3179
TatI	WGTACW	2 cut(s)	1443, 1493
TauI	GCSGC	2 cut(s)	2177, 2346
TfiI	GAWTC	9 cut(s)	177, 343, 805, 1844, 2295, 2381, 2867, 2969, 3029
TscAI	CASTG	6 cut(s)	570, 988, 1545, 1872, 2635, 3071
TseFI	GTSAC	5 cut(s)	1735, 2311, 2351, 2923, 2996
TseI	GCWGC	2 cut(s)	2153, 3190
Tsp45I	GTSAC	5 cut(s)	1735, 2311, 2351, 2923, 2996
TspRI	CASTG	6 cut(s)	570, 988, 1545, 1872, 2635, 3071
VpaK11BI	GGWCC	1 cut(s)	309
VspI	ATTAAT	3 cut(s)	1098, 1203, 2397
XagI	CCTNNNNNAGG	1 cut(s)	2237
XapI	RAATTY	7 cut(s)	1076, 1217, 1477, 1556, 1771, 2145, 2686
XbaI	TCTAGA	1 cut(s)	2197
XceI	RCATGY	6 cut(s)	352, 841, 1590, 2035, 2525, 3064
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1345, 2773
XmaJI	CCTAGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	665
XmnI	GAANNNNTTC	2 cut(s)	804, 2880
XspI	CTAG	7 cut(s)	6, 959, 1145, 1952, 2198, 2264, 3201
Zsp2I	ATGCAT	3 cut(s)	2206, 2368, 2626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.