Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008661

Physical Location & Seq

Genomic Coordinates Forward (+)

2927513 .. 2929859

Gene Structure 2347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGGACAACTACCAGATTCAAATCCCAAAGGTTCAACTGGGTAGTCAGGGATTAGAGGTTTCTAGATTGGGTTTTGGATGTGGGGGACTATCTGGAATATACAAAGCTCCTCCTCTCTCTCATGAAGCTGGGTGTTCTGTGATAAAGGAAGCATTTAATAGGGGCATCACCTTCTTTGACACTTCAGATCTTTATGGTCATAATCATGATAATGAAATCATGGTTGGGAAGGCTTTGAAACAGCTTCCTCGGGAAAAGGTTCAATTGGCTACAAAATTCGGCATTTTCAAGTCGGATGACTTTCAACTCGGGATAAATGGGAGCCCGGAATATGTAAGAGCATGCTGTGAAGCTAGTCTAAAGCGGCTAGATGTCGACTACATTGATCTGTACTACCAGCACCGTGTCGATGTTACAGTGGCAATTGAGGATACTATGGGGGAGCTTAAGAAGTTGGTAAATGAAGGAAAGATAATGTACATTGGTCTATCAGAAGCGAGTATAGACACAATAATGAGGGCTCATGCTGTTCATCCCATCACTGCTGTGCAAATGGAATATTCTCTTTGGACTCGTGATATTGAAGATGAGATTATTCCACTTTGCCGAAAGCTTGGAATTGGGATAGTGTCATATAGTCCCCTCGGTCGTGGGTTCTTCGGTGGGAAGGCAGTTCTAGAGAGCTTGCCTGCAGAAAGTTGGTTGACTACTCATCCAAGGTTCAATGGCGAGAATTTGGAAAAGAACAAACTTTTCTATAACAAACTTGTCAACGTTGCTGCCAAGCATTCGTGCACTGCTCCTCAATTAGCTCTGGCATGGCTTCTCCACCAGGGCAATGACATAATCCCAATCCCCGGGACTACTAAAGTCAAGAACCTTGATATTAATGTTGGATCAGTAAATGTGAAGCTTACCGAAGAGGATTTGAGAGAAATTTCTGATGCTGTGCCCATTGACGAAGTCGGGGGCAACAGAGAATTTGAACTTTTCTCAAAATTTATGTGGAACAATGCAAATACTCCATCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

345

Amino Acids

38.38

Weight (kDa)

5.65

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	24 - 316	5.2e-69	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57250
fragaria_vesca	FvH4_4g07420
malus_domestica	MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1
prunus_persica	Prupe.1G077100_v2.0.a1
pyrus_communis	pycom13g21510 pycom16g21000
rosa_chinensis	RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881
rosa_laevigata	RLG00000009236
rosa_multiflora	Rmu_sc0014676.1_g000003
rosa_roxburghii	Rroxscaffold_5G00344750
rosa_rugosa	Rorug04G0019700
rosa_samantha	Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000
rosa_wichuraiana	Rw4G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	1 cut(s)	367
AclI	AACGTT	1 cut(s)	777
AclWI	GGATC	1 cut(s)	907
AcsI	RAATTY	5 cut(s)	278, 736, 939, 983, 1001
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	2 cut(s)	395, 482
AfiI	CCNNNNNNNGG	1 cut(s)	860
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	9 cut(s)	23, 38, 241, 266, 292, 308, 587, 727, 989
AjnI	CCWGG	1 cut(s)	834
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	9 cut(s)	110, 131, 247, 356, 448, 616, 687, 815, 916
AluI	AGCT	9 cut(s)	110, 131, 247, 356, 448, 616, 687, 815, 916
Alw21I	GWGCWC	1 cut(s)	800
Alw44I	GTGCAC	1 cut(s)	796
AlwI	GGATC	1 cut(s)	907
Ama87I	CYCGRG	3 cut(s)	252, 311, 860
ApaLI	GTGCAC	1 cut(s)	796
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	5 cut(s)	278, 736, 939, 983, 1001
AseI	ATTAAT	1 cut(s)	891
Asp700I	GAANNNNTTC	1 cut(s)	261
AsuC2I	CCSGG	3 cut(s)	329, 861, 862
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	3 cut(s)	252, 311, 860
BaeGI	GKGCMC	2 cut(s)	800, 957
BanII	GRGCYC	2 cut(s)	329, 526
BauI	CACGAG	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	800
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	2 cut(s)	548, 1036
BciT130I	CCWGG	1 cut(s)	836
BciVI	GTATCC	1 cut(s)	427
BcnI	CCSGG	3 cut(s)	329, 861, 862
BfaI	CTAG	4 cut(s)	66, 357, 371, 680
BfmI	CTRYAG	1 cut(s)	693
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	2 cut(s)	368, 783
BlsI	GCNGC	2 cut(s)	369, 784
Bme1390I	CCNGG	4 cut(s)	329, 836, 861, 862
BmeT110I	CYCGRG	3 cut(s)	252, 311, 860
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	4 cut(s)	329, 836, 861, 862
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	177, 937
BmuI	ACTGGG	1 cut(s)	50
BpuMI	CCSGG	3 cut(s)	329, 861, 862
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	6 cut(s)	251, 646, 719, 835, 859, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	847
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	836
BseDI	CCNNGG	6 cut(s)	251, 646, 719, 835, 859, 860
BseGI	GGATG	4 cut(s)	86, 304, 535, 715
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMI	GCAATG	1 cut(s)	847
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	3 cut(s)	102, 105, 795
BseSI	GKGCMC	2 cut(s)	800, 957
BseXI	GCAGC	1 cut(s)	769
BseYI	CCCAGC	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	652
BsiEI	CGRYCG	1 cut(s)	652
BsiHKAI	GWGCWC	1 cut(s)	800
BsiHKCI	CYCGRG	3 cut(s)	252, 311, 860
BsiSI	CCGG	2 cut(s)	329, 861
BslFI	GGGAC	3 cut(s)	102, 627, 877
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmFI	GGGAC	3 cut(s)	102, 627, 877
BsmI	GAATGC	1 cut(s)	790
BsoBI	CYCGRG	3 cut(s)	252, 311, 860
Bsp1286I	GDGCHC	4 cut(s)	329, 526, 800, 957
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	3 cut(s)	190, 388, 899
BspACI	CCGC	1 cut(s)	367
BspHI	TCATGA	2 cut(s)	124, 208
BspLI	GGNNCC	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	1 cut(s)	907
BspTI	CTTAAG	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	847
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	6 cut(s)	251, 646, 719, 835, 859, 860
BssMI	GATC	3 cut(s)	190, 388, 899
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	1 cut(s)	719
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	2 cut(s)	407, 421
Bst6I	CTCTTC	1 cut(s)	918
BstAFI	CTTAAG	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	3 cut(s)	346, 689, 693
BstF5I	GGATG	4 cut(s)	86, 304, 535, 715
BstKTI	GATC	3 cut(s)	193, 391, 902
BstMBI	GATC	3 cut(s)	190, 388, 899
BstMCI	CGRYCG	1 cut(s)	652
BstNI	CCWGG	1 cut(s)	836
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	4 cut(s)	327, 834, 859, 860
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	2 cut(s)	800, 957
BstV1I	GCAGC	1 cut(s)	769
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	86, 304, 535, 715
BtsI	GCAGTG	2 cut(s)	543, 798
BtsIMutI	CAGTG	3 cut(s)	426, 543, 798
Cac8I	GCNNGC	3 cut(s)	346, 689, 693
CciI	TCATGA	2 cut(s)	124, 208
Cfr9I	CCCGGG	1 cut(s)	860
Csp6I	GTAC	2 cut(s)	394, 481
CviAII	CATG	6 cut(s)	125, 209, 223, 345, 527, 822
CviQI	GTAC	2 cut(s)	394, 481
DpnI	GATC	3 cut(s)	192, 390, 901
DpnII	GATC	3 cut(s)	190, 388, 899
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco130I	CCWWGG	1 cut(s)	719
Eco24I	GRGCYC	2 cut(s)	329, 526
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	3 cut(s)	252, 311, 860
EcoRII	CCWGG	1 cut(s)	834
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	2 cut(s)	329, 526
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	6 cut(s)	128, 212, 226, 348, 530, 825
FaqI	GGGAC	3 cut(s)	102, 627, 877
FatI	CATG	6 cut(s)	124, 208, 222, 344, 526, 821
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	368, 783
FokI	GGATG	4 cut(s)	93, 311, 522, 702
FriOI	GRGCYC	2 cut(s)	329, 526
Fsp4HI	GCNGC	2 cut(s)	368, 783
FspBI	CTAG	4 cut(s)	66, 357, 371, 680
GluI	GCNGC	2 cut(s)	368, 783
GsaI	CCCAGC	1 cut(s)	135
HapII	CCGG	2 cut(s)	329, 861
Hin1II	CATG	6 cut(s)	128, 212, 226, 348, 530, 825
HincII	GTYRAC	3 cut(s)	379, 708, 775
HindII	GTYRAC	3 cut(s)	379, 708, 775
HindIII	AAGCTT	2 cut(s)	614, 914
HinfI	GANTC	2 cut(s)	19, 574
HpaII	CCGG	2 cut(s)	329, 861
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	4 cut(s)	379, 708, 775, 798
Hpy188I	TCNGA	4 cut(s)	190, 298, 496, 946
Hpy188III	TCNNGA	9 cut(s)	66, 96, 125, 209, 254, 313, 578, 680, 877
Hpy8I	GTNNAC	4 cut(s)	379, 708, 775, 798
HpyAV	CCTTC	4 cut(s)	184, 226, 461, 664
HpyCH4III	ACNGT	2 cut(s)	407, 421
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	4 cut(s)	553, 695, 798, 1019
HpySE526I	ACGT	1 cut(s)	777
Hsp92II	CATG	6 cut(s)	128, 212, 226, 348, 530, 825
Kzo9I	GATC	3 cut(s)	190, 388, 899
LmnI	GCTCC	4 cut(s)	115, 324, 445, 808
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	2 cut(s)	177, 937
MaeI	CTAG	4 cut(s)	66, 357, 371, 680
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	192, 390, 901
MboI	GATC	3 cut(s)	190, 388, 899
MboII	GAAGA	3 cut(s)	599, 652, 935
MfeI	CAATTG	2 cut(s)	266, 426
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	4 cut(s)	329, 526, 800, 957
MluCI	AATT	9 cut(s)	266, 278, 426, 621, 736, 809, 939, 983, 1001
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	2 cut(s)	276, 877
MnlI	CCTC	9 cut(s)	52, 123, 126, 261, 424, 513, 656, 816, 919
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	3 cut(s)	159, 450, 891
MslI	CAYNNNNRTG	4 cut(s)	207, 213, 515, 548
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	2 cut(s)	329, 861
MspR9I	CCNGG	4 cut(s)	329, 836, 861, 862
MunI	CAATTG	2 cut(s)	266, 426
Mva1269I	GAATGC	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	836
NciI	CCSGG	3 cut(s)	329, 861, 862
NdeII	GATC	3 cut(s)	190, 388, 899
NlaIII	CATG	6 cut(s)	128, 212, 226, 348, 530, 825
NlaIV	GGNNCC	1 cut(s)	326
NspI	RCATGY	1 cut(s)	348
OliI	CACNNNNGTG	1 cut(s)	548
PaeI	GCATGC	1 cut(s)	348
PagI	TCATGA	2 cut(s)	124, 208
PctI	GAATGC	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	965
PkrI	GCNGC	2 cut(s)	369, 784
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PshBI	ATTAAT	1 cut(s)	891
Psp1406I	AACGTT	1 cut(s)	777
Psp6I	CCWGG	1 cut(s)	834
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	965
RsaI	GTAC	2 cut(s)	395, 482
RsaNI	GTAC	2 cut(s)	394, 481
RseI	CAYNNNNRTG	4 cut(s)	207, 213, 515, 548
SalI	GTCGAC	1 cut(s)	377
SaqAI	TTAA	3 cut(s)	159, 450, 891
SatI	GCNGC	2 cut(s)	368, 783
Sau3AI	GATC	3 cut(s)	190, 388, 899
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	4 cut(s)	329, 836, 861, 862
SduI	GDGCHC	4 cut(s)	329, 526, 800, 957
SfaNI	GCATC	2 cut(s)	177, 937
SfcI	CTRYAG	1 cut(s)	693
SmaI	CCCGGG	1 cut(s)	862
SmiMI	CAYNNNNRTG	4 cut(s)	207, 213, 515, 548
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	9 cut(s)	266, 278, 426, 621, 736, 809, 939, 983, 1001
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	4 cut(s)	66, 357, 371, 680
StyD4I	CCNGG	4 cut(s)	327, 834, 859, 860
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	2 cut(s)	407, 421
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	2 cut(s)	378, 411
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	9 cut(s)	266, 278, 426, 621, 736, 809, 939, 983, 1001
TatI	WGTACW	2 cut(s)	393, 480
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	3 cut(s)	159, 450, 891
Tru9I	TTAA	3 cut(s)	159, 450, 891
TscAI	CASTG	3 cut(s)	426, 550, 805
TseI	GCWGC	1 cut(s)	782
TspDTI	ATGAA	4 cut(s)	141, 231, 480, 524
TspMI	CCCGGG	1 cut(s)	860
TspRI	CASTG	3 cut(s)	426, 550, 805
Tth111I	GACNNNGTC	1 cut(s)	965
Vha464I	CTTAAG	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	796
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	5 cut(s)	278, 736, 939, 983, 1001
XbaI	TCTAGA	2 cut(s)	65, 679
XceI	RCATGY	1 cut(s)	348
XmaI	CCCGGG	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	4 cut(s)	66, 357, 371, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.