RLG00000009236

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008661
Physical Location & Seq
Reverse (-)
49517336 .. 49521903
4568 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009236

Sequence Viewer

Length: 3288 bp
ATGCCCAAGCTTTCCTCTACACTCTTCTACACCAAACCCAGCCGATCCCTGTCTTCATCTTCTTCTTCTCCTCGTAACAGTCGTCCAAAACTCCCACCTCTACAAACTTTACTCAAACGTGGCTTCACTCCCACTCTCAATTCCATCATCCAATTCCTTCTCTTTCTTTCACATACCCGCAGATTCAACACAGTCATCCACTTCTTCTCTCAAATGGAGTCGAACCAAATCAAAGGCAACTCCCAAACTCGCTCAATTCTCACATGGGCTCTCCTAAAACTGCACAAATATGAAGATGCAGCGCATTTCATGAGGACCCAGATGGCCAAAGCTTCAAATTTTCCCAGGAATCGCATGTGGGACACTCTCATTCAAGGTCTCTGTATCAACCAGAAAGACCCAGATAAGGCTTTGTTGGTATTACGGGATTGCTTGAGAAAATATGGTACCTTTCCTTCTTCTTTCACTTTTTGCTCGTTAATTTATAGATTTAGCTCTATGGGGGATATGAGTAAGGCAATTGAGGTTGTGGAGTTGATGACAGATGAGAAAATCAACTACCCATTTAACAATTTTGTTTGTAGTTCAGTGATTTCTGGGTTTTGTAAAATTGGAAAGCCAGAAATTGCTGTTGAGTTTTTTGAGAATGCCCTAAAGTCTGGAGCTTTGCAGCCTAATGTTGTGGTATATACAGCACTTGTAGGTGCTCTTTGTAAATTAGGAAGAGTTAGTGAGGTTTGTGATTTAGTTTGTAAAATGGAGAAGGAACGATTGGCATTCGATGTTGTTTTCTATAGTAGTTGGATTTGTGGTTATATTTCGGAAGGGAGTCTAATGGAGGTGTTTCGGAAGAAGAGACAGATGGTAGATAAAGGCATAAGACCAGATACAGTTAGCTATACTATACTCGTAGATGGGTTTTCGAAGCTTGGAGATGTGGAAAAGGCAATCGGCTTTTTGAAAAAGATGAGGAAAGGTGGGCTAGAACCCAGTTTGATTACTTATACCACCATCATGTTGGGATTCTGCAAGAAAGGAAAACTGGAGGAGGCATTTGCTATTTTCAAGATGGTCGAAGATTTGGAAATTGAAGTTGATGAATTTATGTATGCTACTTTAATTCACGGGTTTTGTATGAGAGGGGATCTTGATGGTGTTTTTCGTCTGCTAGATAAAATGGAAAAGAAGGGGATTAATCCAAGCATTGTTACATATAATACGGTAATTAATGGATTATGCAAATTTGGGAGGACTGCCGAGGCTGAGAAGATCTCAAAGGGCATATCTGGAGATACCATTACATATAGTACATTGCTGCATGGGTATATTGAGGAAGAAAATACCTCTGGGATTTTGGAAACCAAGAGGAGATTGGAGGAAGCTGGAGTCTTCATGGATGTTGTTATGTGTAATATACTTATTAAAGCACTATTCATGGTGGGGGCATTTGAGGATGCTTACATACTGTACAAGGGAATGCCAGAGAAGGGTTTGACTGCAAATTCCATTACATACTGTACAATGATTGATGGGTACTGTAAAGTTGGTAGAATTGATGAGGCACTTGAGATATTTGATGAGTTCAGAAGGACACCACTTTCCTCCGTTGCATGTTATAATTGTATAATAAATTGGCTCTGTAAGCAGGGCATGGTAGATATGGCCACGGAGGTGTTTATTGAACTTAATCAGAAAAGCTTAACTTTGGATGATGGTATCTGCAAAATGCTTTTGAAGGCAACTTTTAAACAAAAAAGTGCAACTGGAGTTTTAAATTTGGTTCACAGAGTGGAAAATTTGAGGCCAGGTATGTATGATGTTATGAGCAATGTTGCGATCAGTTTCTTGTGCAAGAGAGGCTTTCATGAGTCTGCATTTGAAGTGTATGCAGTGATGAGGAGGGCAGGGTCGGTTGCAACGAGAAAAACTTATTATTCAATTTTAGAAGGTCTAATTAATGATGGAAAAGAGTGGCTAACTCTGCCTCTTTTAAACATCTTTCTAAAAGAATATGGACTAGTTGAACCTAAAGTAAGCCAGATTCTTGCTTACCACATGTGCCTGAAGGATGTCAGTGATGCTTTCTGCTTTTTAGAAAAGATCAAGGACAGACCTACAGCCATTACCTTGCCTATTTCTCTTTTCAAGACACTTATGAAGAAGGGTAAAGTTTTGGTTGCATATCAGCTTTTCATGGAGGCTGAAGATAGTGTACCCGTTCTGGATGCATTTGATTATTCGCACATGGTTGATGGCCTTTGCAAGGGAGGTTATATCAGTGAGGCACTAGATCTCTGTGGTTTTGCTAAATCTAAGGGAATCACCCTGAATATTATTACTTATAATTCAGTTATAAATGGATTGTGCCGCCAAGGTCATCTTGTTGATGCATTTCGGCTATTTGATTCATTAGAGAGAATTAATTTGGTACCCTCAGAAATCACTTATGCTACATTGATTGATTCCCTACGTAGAGAGGGGTTTCTGCTTGATGCAAAGCAATTATTTGAAAGCATGGTCCTCAAGGGGTTTAAACCGAATACACATGTATATAACTCTATTATTGATGGTTTTTGCAAAATTGGACATATGGAGGATGCCTTGAAGCTTCTTTGTGAATTGGACATGAAATCTCTTAGGCCTGATGAATTCACTGTTACTATTGTCATCAATGGCTTTTGCCGAAAGGGTGATATGGAAGGGGCTCTAAATTTCTTCACTGAGTTCAACAGAAATGGTACATCACCTGATTTTTTGGGTTTCTTATATTTGATAAGAGGTTTATGTGCCAAGGGAAGGATGGAAGAAGCCAGAAGTATCTTGAGAGAAATGCTTCAGTCTCAGTCTGTCCGGGAGCTAATAAATAGAGTTGATGTTGAGCTGGAAACGGAGTCATTGGAAAGCTTGCTTGTTTCACTGTGCGAGCAAGGAAGTATCCAAGAAGCAGTGACTGTCCTTAATGAAATTGCGTCCATGTTTTTCCCTGTTCGGAGTTCATCTATTGATTTCCATCAATCTCATAAACTACAGAAGCCTTGTGACAGCGAGGACCCTAAAACAGTTACTTCAAAAGCTGTAACTTCCATCAATGCAGATTTGGGTATTCAGTTTTCTGGTCTGAAGAAAGTAGAGAAGGTGGCAAAAACTTGTGATGTTATAGGGAGTAGGTCTCAGTTTCATGACTTTGATTATTACTATAAGCAAATTGCTTCACTGTGTTCGATAGGGGAGCTACAAAAGGCTAGTGAATTAGTAAAGGAAATAGTTTCTAATTTGGGCAAGAGTTGA

Protein Analysis

1096

Amino Acids

123.36

Weight (kDa)

8.01

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S27 PF10037 127 - 189 2.4e-06 Mitochondrial 28S ribosomal protein S27
PPR_2 PF13041 261 - 309 9.4e-09 PPR repeat family
PPR_long PF17177 277 - 406 5.1e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 285 - 339 1.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 291 - 324 1.6e-08 PPR repeat
PPR_2 PF13041 296 - 344 5e-13 PPR repeat family
PPR PF01535 298 - 327 1.7e-06 PPR repeat
PPR_1 PF12854 327 - 356 1.6e-08 PPR repeat
PPR_2 PF13041 330 - 378 1.2e-09 PPR repeat family
TPR_24 PF23276 346 - 491 1.2e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 354 - 410 6.9e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 363 - 394 6e-07 PPR repeat
PPR_2 PF13041 366 - 414 1.7e-15 PPR repeat family
PPR_1 PF12854 396 - 423 1.1e-09 PPR repeat
PPR_2 PF13041 466 - 514 9.2e-13 PPR repeat family
PPR_1 PF12854 496 - 527 1.9e-11 PPR repeat
PPR_2 PF13041 501 - 529 7e-06 PPR repeat family
PPR PF01535 503 - 530 3.7e-08 PPR repeat
PPR_2 PF13041 535 - 570 1.7e-06 PPR repeat family
PPR_2 PF13041 746 - 790 2.1e-08 PPR repeat family
PPR_1 PF12854 772 - 803 4.3e-11 PPR repeat
PPR_2 PF13041 777 - 823 1.5e-12 PPR repeat family
PPR PF01535 779 - 807 7.2e-06 PPR repeat
PPR_2 PF13041 811 - 860 2.1e-10 PPR repeat family
PPR_1 PF12854 842 - 873 5.5e-10 PPR repeat
PPR_2 PF13041 846 - 895 9.9e-16 PPR repeat family
PPR_1 PF12854 878 - 908 2.6e-07 PPR repeat
PPR_2 PF13041 887 - 929 4.7e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1617, 2343, 2354
Acc65I GGTACC 2 cut(s) 446, 2428
AccB1I GGYRCC 2 cut(s) 446, 2428
AciI CCGC 2 cut(s) 178, 2368
AclWI GGATC 2 cut(s) 39, 1152
AcoI YGGCCR 2 cut(s) 324, 1662
AcsI RAATTY 8 cut(s) 337, 1100, 1241, 1501, 1774, 1795, 2648, 2710
AcuI CTGAAG 4 cut(s) 2084, 2223, 2819, 3140
AdeI CACNNNGTG 1 cut(s) 1789
AfaI GTAC 8 cut(s) 448, 1309, 1469, 1519, 1535, 2214, 2430, 2740
AfiI CCNNNNNNNGG 4 cut(s) 406, 1487, 2263, 2796
AflIII ACRYGT 2 cut(s) 2055, 2545
AhlI ACTAGT 1 cut(s) 2017
AjnI CCWGG 2 cut(s) 344, 1804
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AleI CACNNNNGTG 1 cut(s) 1670
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 4 cut(s) 383, 850, 2844, 3174
AlwI GGATC 2 cut(s) 39, 1152
AlwNI CAGNNNCTG 1 cut(s) 2951
AoxI GGCC 5 cut(s) 324, 1662, 1802, 2254, 2639
ApeKI GCWGC 3 cut(s) 299, 670, 1315
ApoI RAATTY 8 cut(s) 337, 1100, 1241, 1501, 1774, 1795, 2648, 2710
AseI ATTAAT 4 cut(s) 1194, 1227, 1956, 2421
Asp700I GAANNNNTTC 1 cut(s) 2832
Asp718I GGTACC 2 cut(s) 446, 2428
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 315, 2518, 3049
AsuC2I CCSGG 1 cut(s) 2852
AsuHPI GGTGA 3 cut(s) 2314, 2702, 2736
AsuII TTCGAA 1 cut(s) 923
AvaII GGWCC 3 cut(s) 315, 2518, 3049
BalI TGGCCA 2 cut(s) 326, 1664
BanI GGYRCC 2 cut(s) 446, 2428
BanII GRGCYC 2 cut(s) 271, 2707
BarI GAAGNNNNNNTAC 4 cut(s) 439, 471, 2196, 2228
BbsI GAAGAC 2 cut(s) 45, 1381
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 3 cut(s) 311, 682, 1302
BciT130I CCWGG 2 cut(s) 346, 1806
BciVI GTATCC 1 cut(s) 2945
BcnI CCSGG 1 cut(s) 2852
BcoDI GTCTC 4 cut(s) 383, 850, 2844, 3174
BcuI ACTAGT 1 cut(s) 2017
BfaI CTAG 5 cut(s) 983, 1169, 2018, 2288, 3243
BfmI CTRYAG 3 cut(s) 793, 2115, 3026
BfuI GTATCC 1 cut(s) 2945
BglII AGATCT 2 cut(s) 1269, 2290
BisI GCNGC 4 cut(s) 300, 671, 1316, 2368
BlsI GCNGC 4 cut(s) 301, 672, 1317, 2369
Bme1390I CCNGG 3 cut(s) 346, 1806, 2852
Bme18I GGWCC 3 cut(s) 315, 2518, 3049
BmgT120I GGNCC 3 cut(s) 315, 2518, 3049
BmiI GGNNCC 4 cut(s) 317, 448, 2430, 3051
BmrFI CCNGG 3 cut(s) 346, 1806, 2852
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 7 cut(s) 286, 1444, 2068, 2215, 2377, 2482, 2587
BmuI ACTGGG 1 cut(s) 984
BpiI GAAGAC 2 cut(s) 45, 1381
BplI GAGNNNNNCTC 4 cut(s) 1256, 1288, 3154, 3186
BpmI CTGGAG 5 cut(s) 681, 1064, 1308, 1404, 1785
Bpu14I TTCGAA 1 cut(s) 923
BpuEI CTTGAG 4 cut(s) 454, 1586, 2507, 2842
BpuMI CCSGG 1 cut(s) 2852
BsaAI YACGTR 1 cut(s) 2471
BsaBI GATNNNNATC 1 cut(s) 3009
BsaI GGTCTC 2 cut(s) 383, 3174
BsaJI CCNNGG 5 cut(s) 344, 1257, 1665, 2371, 2790
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 1487, 2263, 2796
Bse1I ACTGG 3 cut(s) 990, 1047, 1768
Bse3DI GCAATG 2 cut(s) 1310, 1834
Bse8I GATNNNNATC 1 cut(s) 3009
BseBI CCWGG 2 cut(s) 346, 1806
BseDI CCNNGG 5 cut(s) 344, 1257, 1665, 2371, 2790
BseGI GGATG 9 cut(s) 147, 195, 1402, 1459, 1714, 2074, 2230, 2602, 2805
BseJI GATNNNNATC 1 cut(s) 3009
BseLI CCNNNNNNNGG 4 cut(s) 406, 1487, 2263, 2796
BseMI GCAATG 2 cut(s) 1310, 1834
BseMII CTCAG 5 cut(s) 1254, 2448, 2712, 2855, 3185
BseNI ACTGG 3 cut(s) 990, 1047, 1768
BseRI GAGGAG 4 cut(s) 60, 1061, 1381, 1912
BseXI GCAGC 3 cut(s) 311, 682, 1302
BseYI CCCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 5 cut(s) 326, 1664, 1804, 2256, 2641
BshNI GGYRCC 2 cut(s) 446, 2428
BsiHKAI GWGCWC 1 cut(s) 709
BsiSI CCGG 1 cut(s) 2851
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 4 cut(s) 406, 1487, 2263, 2796
BsmAI GTCTC 4 cut(s) 383, 850, 2844, 3174
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 3 cut(s) 652, 776, 1482
BsnI GGCC 5 cut(s) 326, 1664, 1804, 2256, 2641
Bso31I GGTCTC 2 cut(s) 383, 3174
Bsp119I TTCGAA 1 cut(s) 923
Bsp1286I GDGCHC 3 cut(s) 271, 709, 2707
Bsp1407I TGTACA 2 cut(s) 1467, 1517
Bsp143I GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
BspACI CCGC 2 cut(s) 178, 2368
BspANI GGCC 5 cut(s) 326, 1664, 1804, 2256, 2641
BspCNI CTCAG 5 cut(s) 1255, 2447, 2713, 2854, 3184
BspHI TCATGA 3 cut(s) 309, 1864, 3178
BspLI GGNNCC 4 cut(s) 317, 448, 2430, 3051
BspPI GGATC 2 cut(s) 39, 1152
BspT104I TTCGAA 1 cut(s) 923
BspT107I GGYRCC 2 cut(s) 446, 2428
BspTNI GGTCTC 2 cut(s) 383, 3174
BsrDI GCAATG 2 cut(s) 1310, 1834
BsrGI TGTACA 2 cut(s) 1467, 1517
BsrI ACTGG 3 cut(s) 990, 1047, 1768
BssECI CCNNGG 5 cut(s) 344, 1257, 1665, 2371, 2790
BssMI GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
BssT1I CCWWGG 2 cut(s) 2371, 2790
Bst2UI CCWGG 2 cut(s) 346, 1806
Bst6I CTCTTC 3 cut(s) 29, 718, 848
BstAUI TGTACA 2 cut(s) 1467, 1517
BstBAI YACGTR 1 cut(s) 2471
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 2 cut(s) 2906, 2924
BstDEI CTNAG 7 cut(s) 1263, 2313, 2434, 2636, 2721, 2841, 3171
BstDSI CCRYGG 1 cut(s) 1665
BstENI CCTNNNNNAGG 1 cut(s) 2261
BstF5I GGATG 9 cut(s) 147, 195, 1402, 1459, 1714, 2074, 2230, 2602, 2805
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 6 cut(s) 47, 1147, 1272, 1839, 2103, 2293
BstMAI GTCTC 4 cut(s) 383, 850, 2844, 3174
BstMBI GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
BstMWI GCNNNNNNNGC 3 cut(s) 1642, 1857, 1981
BstNI CCWGG 2 cut(s) 346, 1806
BstNSI RCATGY 4 cut(s) 358, 1614, 2059, 2549
BstSCI CCNGG 3 cut(s) 344, 1804, 2850
BstSFI CTRYAG 3 cut(s) 793, 2115, 3026
BstSNI TACGTA 1 cut(s) 2471
BstV1I GCAGC 3 cut(s) 311, 682, 1302
BstV2I GAAGAC 2 cut(s) 45, 1381
BstX2I RGATCY 3 cut(s) 1144, 1269, 2290
BstXI CCANNNNNNTGG 1 cut(s) 1018
BstYI RGATCY 3 cut(s) 1144, 1269, 2290
BsuI GTATCC 1 cut(s) 2945
BsuRI GGCC 5 cut(s) 326, 1664, 1804, 2256, 2641
BtgI CCRYGG 1 cut(s) 1665
BtsCI GGATG 9 cut(s) 147, 195, 1402, 1459, 1714, 2074, 2230, 2602, 2805
BtsI GCAGTG 2 cut(s) 1896, 2952
BtsIMutI CAGTG 9 cut(s) 594, 1896, 2080, 2284, 2652, 2718, 2915, 2952, 3212
Cac8I GCNNGC 2 cut(s) 2906, 2924
CaiI CAGNNNCTG 1 cut(s) 2951
CciI TCATGA 3 cut(s) 309, 1864, 3178
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 315, 2518, 3049
CseI GACGC 1 cut(s) 2958
Csp6I GTAC 8 cut(s) 447, 1308, 1468, 1518, 1534, 2213, 2429, 2739
CviQI GTAC 8 cut(s) 447, 1308, 1468, 1518, 1534, 2213, 2429, 2739
DdeI CTNAG 7 cut(s) 1263, 2313, 2434, 2636, 2721, 2841, 3171
DpnI GATC 6 cut(s) 46, 1146, 1271, 1838, 2102, 2292
DpnII GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
DraI TTTAAA 4 cut(s) 1747, 1773, 1992, 2533
DraIII CACNNNGTG 1 cut(s) 1789
EaeI YGGCCR 2 cut(s) 324, 1662
Eam1104I CTCTTC 3 cut(s) 29, 718, 848
EarI CTCTTC 3 cut(s) 29, 718, 848
Eco105I TACGTA 1 cut(s) 2471
Eco130I CCWWGG 2 cut(s) 2371, 2790
Eco147I AGGCCT 1 cut(s) 2641
Eco24I GRGCYC 2 cut(s) 271, 2707
Eco31I GGTCTC 2 cut(s) 383, 3174
Eco47I GGWCC 3 cut(s) 315, 2518, 3049
Eco57I CTGAAG 4 cut(s) 2084, 2223, 2819, 3140
EcoNI CCTNNNNNAGG 1 cut(s) 2261
EcoO109I RGGNCCY 2 cut(s) 315, 3049
EcoRI GAATTC 1 cut(s) 2648
EcoRII CCWGG 2 cut(s) 344, 1804
EcoT14I CCWWGG 2 cut(s) 2371, 2790
EcoT22I ATGCAT 2 cut(s) 2230, 2392
EcoT38I GRGCYC 2 cut(s) 271, 2707
ErhI CCWWGG 2 cut(s) 2371, 2790
FalI AAGNNNNNCTT 6 cut(s) 1687, 1719, 1844, 1876, 2364, 2396
FaqI GGGAC 1 cut(s) 374
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 2589
Fnu4HI GCNGC 4 cut(s) 300, 671, 1316, 2368
FokI GGATG 9 cut(s) 134, 182, 1409, 1466, 1721, 2081, 2237, 2609, 2812
FriOI GRGCYC 2 cut(s) 271, 2707
Fsp4HI GCNGC 4 cut(s) 300, 671, 1316, 2368
FspBI CTAG 5 cut(s) 983, 1169, 2018, 2288, 3243
GlaI GCGC 1 cut(s) 303
GluI GCNGC 4 cut(s) 300, 671, 1316, 2368
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 5 cut(s) 681, 1064, 1308, 1404, 1785
HaeIII GGCC 5 cut(s) 326, 1664, 1804, 2256, 2641
HapII CCGG 1 cut(s) 2851
HgaI GACGC 1 cut(s) 2958
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HindIII AAGCTT 6 cut(s) 8, 330, 926, 1696, 2606, 2902
HpaII CCGG 1 cut(s) 2851
HphI GGTGA 3 cut(s) 2314, 2702, 2736
Hpy166II GTNNAC 2 cut(s) 1783, 2213
Hpy188I TCNGA 7 cut(s) 823, 849, 1586, 1692, 2437, 2991, 3120
Hpy8I GTNNAC 2 cut(s) 1783, 2213
HpyCH4IV ACGT 2 cut(s) 118, 2470
HpyF10VI GCNNNNNNNGC 3 cut(s) 1642, 1857, 1981
HpyF3I CTNAG 7 cut(s) 1263, 2313, 2434, 2636, 2721, 2841, 3171
HpySE526I ACGT 2 cut(s) 118, 2470
HspAI GCGC 1 cut(s) 302
KpnI GGTACC 2 cut(s) 450, 2432
Kzo9I GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
LmnI GCTCC 3 cut(s) 662, 2854, 3229
Lsp1109I GCAGC 3 cut(s) 311, 682, 1302
LweI GCATC 7 cut(s) 286, 1444, 2068, 2215, 2377, 2482, 2587
MaeI CTAG 5 cut(s) 983, 1169, 2018, 2288, 3243
MaeII ACGT 2 cut(s) 118, 2470
MaeIII GTNAC 7 cut(s) 74, 1207, 2656, 2947, 3038, 3061, 3076
MalI GATC 6 cut(s) 46, 1146, 1271, 1838, 2102, 2292
MboI GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 3 cut(s) 1144, 1269, 2290
MhlI GDGCHC 3 cut(s) 271, 709, 2707
MlsI TGGCCA 2 cut(s) 326, 1664
MluNI TGGCCA 2 cut(s) 326, 1664
MlyI GAGTC 5 cut(s) 227, 838, 1395, 1877, 2900
MmeI TCCRAC 1 cut(s) 782
Mox20I TGGCCA 2 cut(s) 326, 1664
Mph1103I ATGCAT 2 cut(s) 2230, 2392
MroXI GAANNNNTTC 1 cut(s) 2832
MscI TGGCCA 2 cut(s) 326, 1664
MslI CAYNNNNRTG 3 cut(s) 288, 1013, 1670
Msp20I TGGCCA 2 cut(s) 326, 1664
MspI CCGG 1 cut(s) 2851
MspR9I CCNGG 3 cut(s) 346, 1806, 2852
MssI GTTTAAAC 1 cut(s) 2533
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 3 cut(s) 652, 776, 1482
MvaI CCWGG 2 cut(s) 346, 1806
MwoI GCNNNNNNNGC 3 cut(s) 1642, 1857, 1981
NciI CCSGG 1 cut(s) 2852
NdeI CATATG 1 cut(s) 2589
NdeII GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
NlaIV GGNNCC 4 cut(s) 317, 448, 2430, 3051
NmeAIII GCCGAG 1 cut(s) 1282
NmuCI GTSAC 2 cut(s) 2947, 3038
NsiI ATGCAT 2 cut(s) 2230, 2392
NspI RCATGY 4 cut(s) 358, 1614, 2059, 2549
NspV TTCGAA 1 cut(s) 923
OliI CACNNNNGTG 1 cut(s) 1670
PagI TCATGA 3 cut(s) 309, 1864, 3178
PceI AGGCCT 1 cut(s) 2641
PciI ACATGT 2 cut(s) 2055, 2545
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 1916
PctI GAATGC 3 cut(s) 652, 776, 1482
PdmI GAANNNNTTC 1 cut(s) 2832
PfeI GAWTC 7 cut(s) 183, 349, 1023, 2041, 2319, 2405, 2462
PfoI TCCNGGA 1 cut(s) 2850
PkrI GCNGC 4 cut(s) 301, 672, 1317, 2369
PleI GAGTC 5 cut(s) 226, 837, 1394, 1876, 2899
PmeI GTTTAAAC 1 cut(s) 2533
PpsI GAGTC 5 cut(s) 226, 837, 1394, 1876, 2899
Ppu21I YACGTR 1 cut(s) 2471
PpuMI RGGWCCY 2 cut(s) 315, 3049
PscI ACATGT 2 cut(s) 2055, 2545
PshBI ATTAAT 4 cut(s) 1194, 1227, 1956, 2421
PsiI TTATAA 3 cut(s) 1617, 2343, 2354
Psp5II RGGWCCY 2 cut(s) 315, 3049
Psp6I CCWGG 2 cut(s) 344, 1804
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 2 cut(s) 344, 1804
PspN4I GGNNCC 4 cut(s) 317, 448, 2430, 3051
PspPI GGNCC 3 cut(s) 315, 2518, 3049
PspPPI RGGWCCY 2 cut(s) 315, 3049
PstNI CAGNNNCTG 1 cut(s) 2951
PsuI RGATCY 3 cut(s) 1144, 1269, 2290
RsaI GTAC 8 cut(s) 448, 1309, 1469, 1519, 1535, 2214, 2430, 2740
RsaNI GTAC 8 cut(s) 447, 1308, 1468, 1518, 1534, 2213, 2429, 2739
RseI CAYNNNNRTG 3 cut(s) 288, 1013, 1670
SatI GCNGC 4 cut(s) 300, 671, 1316, 2368
Sau3AI GATC 6 cut(s) 44, 1144, 1269, 1836, 2100, 2290
Sau96I GGNCC 3 cut(s) 315, 2518, 3049
SchI GAGTC 5 cut(s) 227, 838, 1395, 1877, 2900
ScrFI CCNGG 3 cut(s) 346, 1806, 2852
SduI GDGCHC 3 cut(s) 271, 709, 2707
SfaNI GCATC 7 cut(s) 286, 1444, 2068, 2215, 2377, 2482, 2587
SfcI CTRYAG 3 cut(s) 793, 2115, 3026
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 3 cut(s) 315, 2518, 3049
SmiMI CAYNNNNRTG 3 cut(s) 288, 1013, 1670
SmlI CTYRAG 4 cut(s) 433, 1565, 2522, 2821
SmoI CTYRAG 4 cut(s) 433, 1565, 2522, 2821
SnaBI TACGTA 1 cut(s) 2471
SpeI ACTAGT 1 cut(s) 2017
SseBI AGGCCT 1 cut(s) 2641
SsiI CCGC 2 cut(s) 178, 2368
SspI AATATT 1 cut(s) 2332
SspMI CTAG 5 cut(s) 983, 1169, 2018, 2288, 3243
StuI AGGCCT 1 cut(s) 2641
StyD4I CCNGG 3 cut(s) 344, 1804, 2850
StyI CCWWGG 2 cut(s) 2371, 2790
TaiI ACGT 2 cut(s) 121, 2473
TaqI TCGA 5 cut(s) 221, 780, 923, 1074, 3221
TatI WGTACW 3 cut(s) 1307, 1467, 1517
TauI GCSGC 1 cut(s) 2370
TfiI GAWTC 7 cut(s) 183, 349, 1023, 2041, 2319, 2405, 2462
TscAI CASTG 9 cut(s) 594, 1896, 2080, 2284, 2659, 2725, 2922, 2952, 3219
TseFI GTSAC 2 cut(s) 2947, 3038
TseI GCWGC 3 cut(s) 299, 670, 1315
Tsp45I GTSAC 2 cut(s) 2947, 3038
TspGWI ACGGA 3 cut(s) 1594, 1682, 2903
TspRI CASTG 9 cut(s) 594, 1896, 2080, 2284, 2659, 2725, 2922, 2952, 3219
VpaK11BI GGWCC 3 cut(s) 315, 2518, 3049
VspI ATTAAT 4 cut(s) 1194, 1227, 1956, 2421
XagI CCTNNNNNAGG 1 cut(s) 2261
XapI RAATTY 8 cut(s) 337, 1100, 1241, 1501, 1774, 1795, 2648, 2710
XceI RCATGY 4 cut(s) 358, 1614, 2059, 2549
XcmI CCANNNNNNNNNTGG 3 cut(s) 1015, 1369, 2797
XmnI GAANNNNTTC 1 cut(s) 2832
XspI CTAG 5 cut(s) 983, 1169, 2018, 2288, 3243
Zsp2I ATGCAT 2 cut(s) 2230, 2392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.