Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57250 |
| fragaria_vesca | FvH4_4g07420 |
| malus_domestica | MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1 |
| prunus_persica | Prupe.1G077100_v2.0.a1 |
| pyrus_communis | pycom13g21510 pycom16g21000 |
| rosa_chinensis | RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881 |
| rosa_laevigata | RLG00000009236 |
| rosa_multiflora | Rmu_sc0014676.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00344750 |
| rosa_rugosa | Rorug04G0019700 |
| rosa_samantha | Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000 |
| rosa_wichuraiana | Rw4G008000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 263, 450, 461 |
| AciI | CCGC | 1 cut(s) | 475 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AgsI | TTSAA | 1 cut(s) | 493 |
| AoxI | GGCC | 1 cut(s) | 121 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 497 |
| AspS9I | GGNCC | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 1 cut(s) | 439 |
| BccI | CCATC | 1 cut(s) | 308 |
| BfaI | CTAG | 2 cut(s) | 200, 329 |
| BglII | AGATCT | 1 cut(s) | 397 |
| BisI | GCNGC | 1 cut(s) | 475 |
| BlsI | GCNGC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 122 |
| BmsI | GCATC | 3 cut(s) | 175, 274, 322 |
| BoxI | GACNNNNGTC | 1 cut(s) | 165 |
| BpmI | CTGGAG | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 1 cut(s) | 135 |
| BseDI | CCNNGG | 1 cut(s) | 135 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 1 cut(s) | 101 |
| BseRI | GAGGAG | 1 cut(s) | 19 |
| BshFI | GGCC | 1 cut(s) | 123 |
| BsnI | GGCC | 1 cut(s) | 123 |
| Bsp143I | GATC | 1 cut(s) | 397 |
| BspACI | CCGC | 1 cut(s) | 475 |
| BspANI | GGCC | 1 cut(s) | 123 |
| BspCNI | CTCAG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 1 cut(s) | 135 |
| BssMI | GATC | 1 cut(s) | 397 |
| BssT1I | CCWWGG | 1 cut(s) | 135 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 87 |
| BstEII | GGTNACC | 1 cut(s) | 427 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstKTI | GATC | 1 cut(s) | 400 |
| BstMBI | GATC | 1 cut(s) | 397 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 165 |
| BstPI | GGTNACC | 1 cut(s) | 427 |
| BstX2I | RGATCY | 1 cut(s) | 397 |
| BstYI | RGATCY | 1 cut(s) | 397 |
| BsuRI | GGCC | 1 cut(s) | 123 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| Cac8I | GCNNGC | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 1 cut(s) | 122 |
| CviAII | CATG | 1 cut(s) | 301 |
| CviJI | RGCY | 6 cut(s) | 123, 155, 220, 308, 482, 504 |
| CviKI_1 | RGCY | 6 cut(s) | 123, 155, 220, 308, 482, 504 |
| DdeI | CTNAG | 1 cut(s) | 87 |
| DpnI | GATC | 1 cut(s) | 399 |
| DpnII | GATC | 1 cut(s) | 397 |
| DraI | TTTAAA | 1 cut(s) | 51 |
| Eco130I | CCWWGG | 1 cut(s) | 135 |
| Eco32I | GATATC | 1 cut(s) | 439 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| Eco91I | GGTNACC | 1 cut(s) | 427 |
| EcoO65I | GGTNACC | 1 cut(s) | 427 |
| EcoRV | GATATC | 1 cut(s) | 439 |
| EcoT14I | CCWWGG | 1 cut(s) | 135 |
| EcoT22I | ATGCAT | 2 cut(s) | 289, 337 |
| ErhI | CCWWGG | 1 cut(s) | 135 |
| FaeI | CATG | 1 cut(s) | 304 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 19, 51 |
| FatI | CATG | 1 cut(s) | 300 |
| FauNDI | CATATG | 1 cut(s) | 164 |
| Fnu4HI | GCNGC | 1 cut(s) | 475 |
| FokI | GGATG | 1 cut(s) | 296 |
| Fsp4HI | GCNGC | 1 cut(s) | 475 |
| FspBI | CTAG | 2 cut(s) | 200, 329 |
| GluI | GCNGC | 1 cut(s) | 475 |
| GsuI | CTGGAG | 1 cut(s) | 330 |
| HaeIII | GGCC | 1 cut(s) | 123 |
| Hin1II | CATG | 1 cut(s) | 304 |
| HinfI | GANTC | 3 cut(s) | 77, 148, 511 |
| HphI | GGTGA | 1 cut(s) | 439 |
| Hpy188I | TCNGA | 3 cut(s) | 111, 171, 194 |
| Hpy188III | TCNNGA | 3 cut(s) | 97, 200, 329 |
| HpyAV | CCTTC | 2 cut(s) | 166, 205 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4V | TGCA | 3 cut(s) | 224, 287, 335 |
| HpyF3I | CTNAG | 1 cut(s) | 87 |
| Hsp92II | CATG | 1 cut(s) | 304 |
| Kzo9I | GATC | 1 cut(s) | 397 |
| LpnPI | CCDG | 6 cut(s) | 130, 137, 138, 234, 252, 294 |
| LweI | GCATC | 3 cut(s) | 175, 274, 322 |
| MaeI | CTAG | 2 cut(s) | 200, 329 |
| MaeIII | GTNAC | 3 cut(s) | 229, 241, 427 |
| MalI | GATC | 1 cut(s) | 399 |
| MboI | GATC | 1 cut(s) | 397 |
| MboII | GAAGA | 1 cut(s) | 140 |
| MflI | RGATCY | 1 cut(s) | 397 |
| MluCI | AATT | 3 cut(s) | 45, 60, 451 |
| MnlI | CCTC | 1 cut(s) | 382 |
| Mph1103I | ATGCAT | 2 cut(s) | 289, 337 |
| MroXI | GAANNNNTTC | 1 cut(s) | 497 |
| MseI | TTAA | 2 cut(s) | 50, 252 |
| NdeI | CATATG | 1 cut(s) | 164 |
| NdeII | GATC | 1 cut(s) | 397 |
| NlaIII | CATG | 1 cut(s) | 304 |
| NmuCI | GTSAC | 2 cut(s) | 229, 427 |
| NsiI | ATGCAT | 2 cut(s) | 289, 337 |
| PdmI | GAANNNNTTC | 1 cut(s) | 497 |
| PfeI | GAWTC | 3 cut(s) | 77, 148, 511 |
| PkrI | GCNGC | 1 cut(s) | 476 |
| PshAI | GACNNNNGTC | 1 cut(s) | 165 |
| PsiI | TTATAA | 3 cut(s) | 263, 450, 461 |
| PspEI | GGTNACC | 1 cut(s) | 427 |
| PspPI | GGNCC | 1 cut(s) | 122 |
| PsuI | RGATCY | 1 cut(s) | 397 |
| SaqAI | TTAA | 2 cut(s) | 50, 252 |
| SatI | GCNGC | 1 cut(s) | 475 |
| Sau3AI | GATC | 1 cut(s) | 397 |
| Sau96I | GGNCC | 1 cut(s) | 122 |
| SetI | ASST | 3 cut(s) | 58, 141, 488 |
| SfaNI | GCATC | 3 cut(s) | 175, 274, 322 |
| Sse9I | AATT | 3 cut(s) | 45, 60, 451 |
| SsiI | CCGC | 1 cut(s) | 475 |
| SspMI | CTAG | 2 cut(s) | 200, 329 |
| StyI | CCWWGG | 1 cut(s) | 135 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaqI | TCGA | 1 cut(s) | 98 |
| TasI | AATT | 3 cut(s) | 45, 60, 451 |
| TauI | GCSGC | 1 cut(s) | 477 |
| TfiI | GAWTC | 3 cut(s) | 77, 148, 511 |
| Tru1I | TTAA | 2 cut(s) | 50, 252 |
| Tru9I | TTAA | 2 cut(s) | 50, 252 |
| TseFI | GTSAC | 2 cut(s) | 229, 427 |
| Tsp45I | GTSAC | 2 cut(s) | 229, 427 |
| TspDTI | ATGAA | 2 cut(s) | 224, 503 |
| XbaI | TCTAGA | 2 cut(s) | 199, 328 |
| XmnI | GAANNNNTTC | 1 cut(s) | 497 |
| XspI | CTAG | 2 cut(s) | 200, 329 |
| Zsp2I | ATGCAT | 2 cut(s) | 289, 337 |