Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008661

Physical Location & Seq

Genomic Coordinates Forward (+)

48936373 .. 48937047

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG356200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTATGATGTTATGAGCAATGTTGCGATCAGTTTCTTGTGCAAGAGAGGGTTTCATGAGTCTGCATTTGAAGTGTATGCAGTGATGAGGAGGGAAGGGTCGGTTGCAACGAGAAAAACTTATTATTCAATTTTAGAAGGTCTAATTAATGATAGAAAAGAGTGGCTAACTCTGCCTCTTTTAAACATCTTTCTAAAAGAATATGGACTAGTTGAACCTAAAGTAAGCCAGATTCTTGCTTACCACATGTGCCTGAAGGATGTCAATGATGCTTTCTGCTTTTTAGAAAAGATCAAGGACAGACCTACAGCCATTACCTTGCCTATTTCTCTTTTCAAGACACTTATGAAGAAGGGTAAAGTTTTGGTTGCATATCAGCTTTTCATGGAGGCTGAAGATAGTGTACCCGTTCTGGATGCATTTGATTATTCGCACATGGTTGATGGCCTTTGCAAGGGTGGATATATCAGTGAGGCACTAGATCTCTGTGGTTTTGCTAAATCTAAGGGAATCACCCTGAATATTATTGCTTATAATTCAGTTATAAATGGATTGTGCCGCCAAGGTCATCTTGTTGATGCATTTCGGCTATTTGATTCATTAGAGAGAATTAATTTGGTAAAGAAAGTTTTTGGGCAAAGTTCTGCAACATTGCAAATTCATGATAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

224

Amino Acids

25.37

Weight (kDa)

8.14

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	169 - 200	2.7e-10	PPR repeat
PPR_2	PF13041	174 - 202	4e-07	PPR repeat family
PPR	PF01535	177 - 204	4.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0008661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57250
fragaria_vesca	FvH4_4g07420
malus_domestica	MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1
prunus_persica	Prupe.1G077100_v2.0.a1
pyrus_communis	pycom13g21510 pycom16g21000
rosa_chinensis	RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881
rosa_laevigata	RLG00000009236
rosa_multiflora	Rmu_sc0014676.1_g000003
rosa_roxburghii	Rroxscaffold_5G00344750
rosa_rugosa	Rorug04G0019700
rosa_samantha	Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000
rosa_wichuraiana	Rw4G008000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	534, 545
AciI	CCGC	1 cut(s)	559
AcsI	RAATTY	1 cut(s)	657
AcuI	CTGAAG	2 cut(s)	275, 414
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	71, 129, 215, 337
AhlI	ACTAGT	1 cut(s)	208
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
AoxI	GGCC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	657
AseI	ATTAAT	2 cut(s)	147, 612
AsuHPI	GGTGA	1 cut(s)	505
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BccI	CCATC	1 cut(s)	437
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	2 cut(s)	209, 479
BfmI	CTRYAG	1 cut(s)	306
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	560
BmsI	GCATC	3 cut(s)	259, 406, 568
BsaJI	CCNNGG	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse3DI	GCAATG	2 cut(s)	25, 650
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	2 cut(s)	265, 421
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	2 cut(s)	25, 650
BseRI	GAGGAG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	454
BsnI	GGCC	1 cut(s)	447
Bsp143I	GATC	3 cut(s)	27, 291, 481
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	1 cut(s)	447
BspHI	TCATGA	2 cut(s)	55, 661
BsrDI	GCAATG	2 cut(s)	25, 650
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	3 cut(s)	27, 291, 481
BssT1I	CCWWGG	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	504
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	265, 421
BstKTI	GATC	3 cut(s)	30, 294, 484
BstMBI	GATC	3 cut(s)	27, 291, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	265, 421
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 475
CciI	TCATGA	2 cut(s)	55, 661
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	56, 247, 385, 436, 662
CviJI	RGCY	7 cut(s)	166, 228, 311, 379, 392, 447, 589
CviKI_1	RGCY	7 cut(s)	166, 228, 311, 379, 392, 447, 589
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	29, 293, 483
DpnII	GATC	3 cut(s)	27, 291, 481
DraI	TTTAAA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	562
Eco57I	CTGAAG	2 cut(s)	275, 414
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	562
EcoT22I	ATGCAT	2 cut(s)	421, 583
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	5 cut(s)	59, 250, 388, 439, 665
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FatI	CATG	5 cut(s)	55, 246, 384, 435, 661
Fnu4HI	GCNGC	1 cut(s)	559
FokI	GGATG	2 cut(s)	272, 428
Fsp4HI	GCNGC	1 cut(s)	559
FspBI	CTAG	2 cut(s)	209, 479
GluI	GCNGC	1 cut(s)	559
HaeIII	GGCC	1 cut(s)	447
Hin1II	CATG	5 cut(s)	59, 250, 388, 439, 665
HinfI	GANTC	4 cut(s)	59, 232, 510, 596
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188III	TCNNGA	4 cut(s)	56, 337, 413, 662
Hpy8I	GTNNAC	1 cut(s)	404
HpyAV	CCTTC	4 cut(s)	89, 131, 250, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	504
Hsp92II	CATG	5 cut(s)	59, 250, 388, 439, 665
Kzo9I	GATC	3 cut(s)	27, 291, 481
LpnPI	CCDG	4 cut(s)	242, 266, 398, 530
LweI	GCATC	3 cut(s)	259, 406, 568
MaeI	CTAG	2 cut(s)	209, 479
MalI	GATC	3 cut(s)	29, 293, 483
MboI	GATC	3 cut(s)	27, 291, 481
MboII	GAAGA	2 cut(s)	361, 407
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	6 cut(s)	129, 144, 535, 609, 613, 657
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	6 cut(s)	41, 81, 84, 186, 382, 466
Mph1103I	ATGCAT	2 cut(s)	421, 583
MseI	TTAA	4 cut(s)	147, 182, 612, 673
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	3 cut(s)	27, 291, 481
NlaIII	CATG	5 cut(s)	59, 250, 388, 439, 665
NsiI	ATGCAT	2 cut(s)	421, 583
NspI	RCATGY	1 cut(s)	250
PagI	TCATGA	2 cut(s)	55, 661
PciI	ACATGT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	232, 510, 596
PkrI	GCNGC	1 cut(s)	560
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	246
PshBI	ATTAAT	2 cut(s)	147, 612
PsiI	TTATAA	2 cut(s)	534, 545
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	4 cut(s)	147, 182, 612, 673
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	3 cut(s)	27, 291, 481
SchI	GAGTC	1 cut(s)	68
SetI	ASST	6 cut(s)	142, 220, 307, 320, 381, 568
SfaNI	GCATC	3 cut(s)	259, 406, 568
SfcI	CTRYAG	1 cut(s)	306
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	6 cut(s)	129, 144, 535, 609, 613, 657
SsiI	CCGC	1 cut(s)	559
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	209, 479
StyI	CCWWGG	1 cut(s)	562
TasI	AATT	6 cut(s)	129, 144, 535, 609, 613, 657
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	3 cut(s)	232, 510, 596
Tru1I	TTAA	4 cut(s)	147, 182, 612, 673
Tru9I	TTAA	4 cut(s)	147, 182, 612, 673
TscAI	CASTG	2 cut(s)	87, 475
TspDTI	ATGAA	5 cut(s)	44, 362, 373, 588, 650
TspRI	CASTG	2 cut(s)	87, 475
VspI	ATTAAT	2 cut(s)	147, 612
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	1 cut(s)	657
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	2 cut(s)	209, 479
Zsp2I	ATGCAT	2 cut(s)	421, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.