Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57250 |
| fragaria_vesca | FvH4_4g07420 |
| malus_domestica | MD13G1243700.v1.1 MD16G1250300.v1.1 MD16G1250400.v1.1 MD16G1250500.v1.1 MD16G1250600.v1.1 |
| prunus_persica | Prupe.1G077100_v2.0.a1 |
| pyrus_communis | pycom13g21510 pycom16g21000 |
| rosa_chinensis | RchiOBHm_Chr2g0131261 RchiOBHm_Chr4g0399881 |
| rosa_laevigata | RLG00000009236 |
| rosa_multiflora | Rmu_sc0014676.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00344750 |
| rosa_rugosa | Rorug04G0019700 |
| rosa_samantha | Rh2BG356200 Rh4AG096800 Rh4BG094300 Rh4CG105900 Rh4DG089200 Rh4DG091000 |
| rosa_wichuraiana | Rw4G008000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1629, 1835, 2168, 2678 |
| Acc36I | ACCTGC | 1 cut(s) | 183 |
| AciI | CCGC | 7 cut(s) | 132, 190, 311, 641, 1511, 2380, 3104 |
| AclWI | GGATC | 1 cut(s) | 1164 |
| AcoI | YGGCCR | 3 cut(s) | 336, 1674, 2133 |
| AcuI | CTGAAG | 3 cut(s) | 2096, 2235, 2831 |
| AfaI | GTAC | 8 cut(s) | 572, 1321, 1481, 1531, 1547, 2226, 2752, 3070 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2808, 2835 |
| AjnI | CCWGG | 1 cut(s) | 540 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 410, 442, 767, 799, 945, 977, 2420, 2452 |
| Alw21I | GWGCWC | 4 cut(s) | 721, 844, 2719, 2739 |
| AlwI | GGATC | 1 cut(s) | 1164 |
| ApeKI | GCWGC | 2 cut(s) | 1772, 1883 |
| AseI | ATTAAT | 4 cut(s) | 491, 1206, 1239, 2433 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2403, 2844 |
| AspS9I | GGNCC | 5 cut(s) | 327, 538, 2530, 2982, 3294 |
| AsuC2I | CCSGG | 1 cut(s) | 413 |
| AsuHPI | GGTGA | 4 cut(s) | 527, 2714, 2748, 3000 |
| AvaII | GGWCC | 4 cut(s) | 327, 538, 2530, 2982 |
| AxyI | CCTNAGG | 3 cut(s) | 1878, 2040, 2648 |
| BalI | TGGCCA | 1 cut(s) | 1676 |
| BanII | GRGCYC | 2 cut(s) | 283, 2739 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 451, 483, 2208, 2240 |
| BbsI | GAAGAC | 2 cut(s) | 63, 86 |
| Bbv12I | GWGCWC | 4 cut(s) | 721, 844, 2719, 2739 |
| BbvI | GCAGC | 2 cut(s) | 1784, 1870 |
| BceAI | ACGGC | 1 cut(s) | 2148 |
| BciT130I | CCWGG | 1 cut(s) | 542 |
| BclI | TGATCA | 1 cut(s) | 447 |
| BcnI | CCSGG | 1 cut(s) | 413 |
| BfaI | CTAG | 4 cut(s) | 941, 2030, 2057, 3255 |
| BfmI | CTRYAG | 1 cut(s) | 805 |
| BfuAI | ACCTGC | 1 cut(s) | 183 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2385 |
| BglII | AGATCT | 2 cut(s) | 1281, 2302 |
| BisI | GCNGC | 4 cut(s) | 133, 1773, 1884, 2380 |
| BlsI | GCNGC | 4 cut(s) | 134, 1774, 1885, 2381 |
| Bme1390I | CCNGG | 2 cut(s) | 413, 542 |
| Bme18I | GGWCC | 4 cut(s) | 327, 538, 2530, 2982 |
| BmgT120I | GGNCC | 5 cut(s) | 327, 538, 2530, 2982, 3294 |
| BmiI | GGNNCC | 3 cut(s) | 329, 2442, 2983 |
| BmrFI | CCNGG | 2 cut(s) | 413, 542 |
| BpiI | GAAGAC | 2 cut(s) | 63, 86 |
| BpmI | CTGGAG | 4 cut(s) | 563, 1416, 1598, 1797 |
| BpuEI | CTTGAG | 2 cut(s) | 2723, 2854 |
| BpuMI | CCSGG | 1 cut(s) | 413 |
| BsaJI | CCNNGG | 3 cut(s) | 1680, 2383, 2802 |
| BsaWI | WCCGGW | 2 cut(s) | 402, 2097 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2597, 2627, 2949, 2979 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2808, 2835 |
| Bse1I | ACTGG | 3 cut(s) | 1581, 1607, 2599 |
| Bse21I | CCTNAGG | 3 cut(s) | 1878, 2040, 2648 |
| Bse3DI | GCAATG | 2 cut(s) | 1322, 1846 |
| BseBI | CCWGG | 1 cut(s) | 542 |
| BseDI | CCNNGG | 3 cut(s) | 1680, 2383, 2802 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2808, 2835 |
| BseMI | GCAATG | 2 cut(s) | 1322, 1846 |
| BseMII | CTCAG | 6 cut(s) | 52, 1629, 1869, 2006, 2460, 2662 |
| BseNI | ACTGG | 3 cut(s) | 1581, 1607, 2599 |
| BseRI | GAGGAG | 4 cut(s) | 1073, 1393, 1924, 2957 |
| BseXI | GCAGC | 2 cut(s) | 1784, 1870 |
| BsgI | GTGCAG | 1 cut(s) | 1791 |
| BsiHKAI | GWGCWC | 4 cut(s) | 721, 844, 2719, 2739 |
| BsiSI | CCGG | 3 cut(s) | 403, 413, 2098 |
| BslFI | GGGAC | 1 cut(s) | 386 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2808, 2835 |
| BsmFI | GGGAC | 1 cut(s) | 386 |
| BsmI | GAATGC | 2 cut(s) | 664, 1494 |
| Bsp1286I | GDGCHC | 5 cut(s) | 283, 721, 844, 2719, 2739 |
| Bsp1407I | TGTACA | 2 cut(s) | 1479, 1529 |
| Bsp143I | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| BspACI | CCGC | 7 cut(s) | 132, 190, 311, 641, 1511, 2380, 3104 |
| BspCNI | CTCAG | 6 cut(s) | 51, 1628, 1870, 2005, 2459, 2661 |
| BspHI | TCATGA | 1 cut(s) | 321 |
| BspLI | GGNNCC | 3 cut(s) | 329, 2442, 2983 |
| BspMI | ACCTGC | 1 cut(s) | 183 |
| BspPI | GGATC | 1 cut(s) | 1164 |
| BsrDI | GCAATG | 2 cut(s) | 1322, 1846 |
| BsrGI | TGTACA | 2 cut(s) | 1479, 1529 |
| BsrI | ACTGG | 3 cut(s) | 1581, 1607, 2599 |
| BssECI | CCNNGG | 3 cut(s) | 1680, 2383, 2802 |
| BssMI | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| BssT1I | CCWWGG | 2 cut(s) | 2383, 2802 |
| Bst2UI | CCWGG | 1 cut(s) | 542 |
| Bst4CI | ACNGT | 7 cut(s) | 92, 205, 1234, 1443, 1550, 2668, 3073 |
| Bst6I | CTCTTC | 5 cut(s) | 29, 58, 179, 300, 730 |
| BstAUI | TGTACA | 2 cut(s) | 1479, 1529 |
| BstC8I | GCNNGC | 4 cut(s) | 1888, 2127, 2936, 3019 |
| BstDEI | CTNAG | 8 cut(s) | 38, 503, 1615, 1878, 1992, 2040, 2446, 2648 |
| BstEII | GGTNACC | 1 cut(s) | 2332 |
| BstKTI | GATC | 5 cut(s) | 450, 896, 1159, 1284, 2305 |
| BstMBI | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1654, 2385, 2940 |
| BstNI | CCWGG | 1 cut(s) | 542 |
| BstNSI | RCATGY | 2 cut(s) | 1626, 1890 |
| BstPI | GGTNACC | 1 cut(s) | 2332 |
| BstSCI | CCNGG | 2 cut(s) | 411, 540 |
| BstSFI | CTRYAG | 1 cut(s) | 805 |
| BstV1I | GCAGC | 2 cut(s) | 1784, 1870 |
| BstV2I | GAAGAC | 2 cut(s) | 63, 86 |
| BstX2I | RGATCY | 3 cut(s) | 1156, 1281, 2302 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1030, 3125 |
| BstYI | RGATCY | 3 cut(s) | 1156, 1281, 2302 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1878, 2040, 2648 |
| BtgZI | GCGATG | 1 cut(s) | 1919 |
| BtsI | GCAGTG | 1 cut(s) | 2950 |
| BtsIMutI | CAGTG | 6 cut(s) | 1230, 1439, 1574, 2296, 2664, 2950 |
| BveI | ACCTGC | 1 cut(s) | 183 |
| Cac8I | GCNNGC | 4 cut(s) | 1888, 2127, 2936, 3019 |
| CciI | TCATGA | 1 cut(s) | 321 |
| Cfr13I | GGNCC | 5 cut(s) | 327, 538, 2530, 2982, 3294 |
| Csp6I | GTAC | 8 cut(s) | 571, 1320, 1480, 1530, 1546, 2225, 2751, 3069 |
| CviQI | GTAC | 8 cut(s) | 571, 1320, 1480, 1530, 1546, 2225, 2751, 3069 |
| DdeI | CTNAG | 8 cut(s) | 38, 503, 1615, 1878, 1992, 2040, 2446, 2648 |
| DpnI | GATC | 5 cut(s) | 449, 895, 1158, 1283, 2304 |
| DpnII | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| DraI | TTTAAA | 2 cut(s) | 1956, 2367 |
| EaeI | YGGCCR | 3 cut(s) | 336, 1674, 2133 |
| Eam1104I | CTCTTC | 5 cut(s) | 29, 58, 179, 300, 730 |
| EarI | CTCTTC | 5 cut(s) | 29, 58, 179, 300, 730 |
| EciI | GGCGGA | 1 cut(s) | 326 |
| Ecl136II | GAGCTC | 1 cut(s) | 2737 |
| Eco130I | CCWWGG | 2 cut(s) | 2383, 2802 |
| Eco147I | AGGCCT | 3 cut(s) | 390, 2653, 3181 |
| Eco24I | GRGCYC | 2 cut(s) | 283, 2739 |
| Eco32I | GATATC | 1 cut(s) | 3115 |
| Eco47I | GGWCC | 4 cut(s) | 327, 538, 2530, 2982 |
| Eco53kI | GAGCTC | 1 cut(s) | 2737 |
| Eco57I | CTGAAG | 3 cut(s) | 2096, 2235, 2831 |
| Eco81I | CCTNAGG | 3 cut(s) | 1878, 2040, 2648 |
| Eco91I | GGTNACC | 1 cut(s) | 2332 |
| EcoICRI | GAGCTC | 1 cut(s) | 2737 |
| EcoO109I | RGGNCCY | 2 cut(s) | 327, 538 |
| EcoO65I | GGTNACC | 1 cut(s) | 2332 |
| EcoRI | GAATTC | 2 cut(s) | 2660, 2723 |
| EcoRII | CCWGG | 1 cut(s) | 540 |
| EcoRV | GATATC | 1 cut(s) | 3115 |
| EcoT14I | CCWWGG | 2 cut(s) | 2383, 2802 |
| EcoT22I | ATGCAT | 1 cut(s) | 2194 |
| EcoT38I | GRGCYC | 2 cut(s) | 283, 2739 |
| ErhI | CCWWGG | 2 cut(s) | 2383, 2802 |
| FaqI | GGGAC | 1 cut(s) | 386 |
| FauI | CCCGC | 1 cut(s) | 197 |
| FauNDI | CATATG | 3 cut(s) | 2069, 2458, 2601 |
| FbaI | TGATCA | 1 cut(s) | 447 |
| Fnu4HI | GCNGC | 4 cut(s) | 133, 1773, 1884, 2380 |
| FriOI | GRGCYC | 2 cut(s) | 283, 2739 |
| Fsp4HI | GCNGC | 4 cut(s) | 133, 1773, 1884, 2380 |
| FspBI | CTAG | 4 cut(s) | 941, 2030, 2057, 3255 |
| GluI | GCNGC | 4 cut(s) | 133, 1773, 1884, 2380 |
| GsuI | CTGGAG | 4 cut(s) | 563, 1416, 1598, 1797 |
| HapII | CCGG | 3 cut(s) | 403, 413, 2098 |
| HindIII | AAGCTT | 2 cut(s) | 420, 2618 |
| HinfI | GANTC | 9 cut(s) | 230, 259, 374, 1398, 1514, 2053, 2417, 2903, 2954 |
| HpaII | CCGG | 3 cut(s) | 403, 413, 2098 |
| HphI | GGTGA | 4 cut(s) | 527, 2714, 2748, 3000 |
| Hpy166II | GTNNAC | 1 cut(s) | 3008 |
| Hpy8I | GTNNAC | 1 cut(s) | 3008 |
| Hpy99I | CGWCG | 1 cut(s) | 70 |
| HpyCH4III | ACNGT | 7 cut(s) | 92, 205, 1234, 1443, 1550, 2668, 3073 |
| HpyCH4IV | ACGT | 2 cut(s) | 1830, 3083 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1654, 2385, 2940 |
| HpyF3I | CTNAG | 8 cut(s) | 38, 503, 1615, 1878, 1992, 2040, 2446, 2648 |
| HpySE526I | ACGT | 2 cut(s) | 1830, 3083 |
| Ksp22I | TGATCA | 1 cut(s) | 447 |
| Kzo9I | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| LmnI | GCTCC | 3 cut(s) | 313, 674, 2866 |
| Lsp1109I | GCAGC | 2 cut(s) | 1784, 1870 |
| MaeI | CTAG | 4 cut(s) | 941, 2030, 2057, 3255 |
| MaeII | ACGT | 2 cut(s) | 1830, 3083 |
| MaeIII | GTNAC | 7 cut(s) | 86, 694, 1219, 1421, 2332, 2850, 3088 |
| MalI | GATC | 5 cut(s) | 449, 895, 1158, 1283, 2304 |
| MboI | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| MfeI | CAATTG | 1 cut(s) | 531 |
| MflI | RGATCY | 3 cut(s) | 1156, 1281, 2302 |
| MhlI | GDGCHC | 5 cut(s) | 283, 721, 844, 2719, 2739 |
| MlsI | TGGCCA | 1 cut(s) | 1676 |
| MluNI | TGGCCA | 1 cut(s) | 1676 |
| MlyI | GAGTC | 4 cut(s) | 224, 253, 368, 1407 |
| MmeI | TCCRAC | 2 cut(s) | 258, 794 |
| Mox20I | TGGCCA | 1 cut(s) | 1676 |
| Mph1103I | ATGCAT | 1 cut(s) | 2194 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2403, 2844 |
| MscI | TGGCCA | 1 cut(s) | 1676 |
| MslI | CAYNNNNRTG | 2 cut(s) | 300, 2012 |
| Msp20I | TGGCCA | 1 cut(s) | 1676 |
| MspA1I | CMGCKG | 1 cut(s) | 1775 |
| MspI | CCGG | 3 cut(s) | 403, 413, 2098 |
| MspR9I | CCNGG | 2 cut(s) | 413, 542 |
| MunI | CAATTG | 1 cut(s) | 531 |
| Mva1269I | GAATGC | 2 cut(s) | 664, 1494 |
| MvaI | CCWGG | 1 cut(s) | 542 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1654, 2385, 2940 |
| NciI | CCSGG | 1 cut(s) | 413 |
| NdeI | CATATG | 3 cut(s) | 2069, 2458, 2601 |
| NdeII | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| NlaIV | GGNNCC | 3 cut(s) | 329, 2442, 2983 |
| NmuCI | GTSAC | 3 cut(s) | 694, 1219, 2850 |
| NsiI | ATGCAT | 1 cut(s) | 2194 |
| NspI | RCATGY | 2 cut(s) | 1626, 1890 |
| PacI | TTAATTAA | 1 cut(s) | 1134 |
| PaeI | GCATGC | 1 cut(s) | 1890 |
| PagI | TCATGA | 1 cut(s) | 321 |
| PceI | AGGCCT | 3 cut(s) | 390, 2653, 3181 |
| PctI | GAATGC | 2 cut(s) | 664, 1494 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2403, 2844 |
| PfeI | GAWTC | 5 cut(s) | 1514, 2053, 2417, 2903, 2954 |
| PfoI | TCCNGGA | 1 cut(s) | 540 |
| PkrI | GCNGC | 4 cut(s) | 134, 1774, 1885, 2381 |
| PleI | GAGTC | 4 cut(s) | 224, 253, 368, 1406 |
| PpsI | GAGTC | 4 cut(s) | 224, 253, 368, 1406 |
| PpuMI | RGGWCCY | 2 cut(s) | 327, 538 |
| PshBI | ATTAAT | 4 cut(s) | 491, 1206, 1239, 2433 |
| PsiI | TTATAA | 4 cut(s) | 1629, 1835, 2168, 2678 |
| Psp124BI | GAGCTC | 1 cut(s) | 2739 |
| Psp5II | RGGWCCY | 2 cut(s) | 327, 538 |
| Psp6I | CCWGG | 1 cut(s) | 540 |
| PspEI | GGTNACC | 1 cut(s) | 2332 |
| PspGI | CCWGG | 1 cut(s) | 540 |
| PspN4I | GGNNCC | 3 cut(s) | 329, 2442, 2983 |
| PspPI | GGNCC | 5 cut(s) | 327, 538, 2530, 2982, 3294 |
| PspPPI | RGGWCCY | 2 cut(s) | 327, 538 |
| PsuI | RGATCY | 3 cut(s) | 1156, 1281, 2302 |
| PvuII | CAGCTG | 1 cut(s) | 1775 |
| RsaI | GTAC | 8 cut(s) | 572, 1321, 1481, 1531, 1547, 2226, 2752, 3070 |
| RsaNI | GTAC | 8 cut(s) | 571, 1320, 1480, 1530, 1546, 2225, 2751, 3069 |
| RseI | CAYNNNNRTG | 2 cut(s) | 300, 2012 |
| SacI | GAGCTC | 1 cut(s) | 2739 |
| SatI | GCNGC | 4 cut(s) | 133, 1773, 1884, 2380 |
| Sau3AI | GATC | 5 cut(s) | 447, 893, 1156, 1281, 2302 |
| Sau96I | GGNCC | 5 cut(s) | 327, 538, 2530, 2982, 3294 |
| SchI | GAGTC | 4 cut(s) | 224, 253, 368, 1407 |
| ScrFI | CCNGG | 2 cut(s) | 413, 542 |
| SduI | GDGCHC | 5 cut(s) | 283, 721, 844, 2719, 2739 |
| SfcI | CTRYAG | 1 cut(s) | 805 |
| SinI | GGWCC | 4 cut(s) | 327, 538, 2530, 2982 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 300, 2012 |
| SmlI | CTYRAG | 2 cut(s) | 2738, 2833 |
| SmoI | CTYRAG | 2 cut(s) | 2738, 2833 |
| SphI | GCATGC | 1 cut(s) | 1890 |
| SseBI | AGGCCT | 3 cut(s) | 390, 2653, 3181 |
| SsiI | CCGC | 7 cut(s) | 132, 190, 311, 641, 1511, 2380, 3104 |
| SspI | AATATT | 1 cut(s) | 691 |
| SspMI | CTAG | 4 cut(s) | 941, 2030, 2057, 3255 |
| SstI | GAGCTC | 1 cut(s) | 2739 |
| StuI | AGGCCT | 3 cut(s) | 390, 2653, 3181 |
| StyD4I | CCNGG | 2 cut(s) | 411, 540 |
| StyI | CCWWGG | 2 cut(s) | 2383, 2802 |
| TaaI | ACNGT | 7 cut(s) | 92, 205, 1234, 1443, 1550, 2668, 3073 |
| TaiI | ACGT | 2 cut(s) | 1833, 3086 |
| TaqI | TCGA | 3 cut(s) | 654, 2085, 2187 |
| TatI | WGTACW | 3 cut(s) | 1319, 1479, 1529 |
| TauI | GCSGC | 2 cut(s) | 135, 2382 |
| TfiI | GAWTC | 5 cut(s) | 1514, 2053, 2417, 2903, 2954 |
| TscAI | CASTG | 6 cut(s) | 1237, 1446, 1581, 2296, 2671, 2950 |
| TseFI | GTSAC | 3 cut(s) | 694, 1219, 2850 |
| TseI | GCWGC | 2 cut(s) | 1772, 1883 |
| Tsp45I | GTSAC | 3 cut(s) | 694, 1219, 2850 |
| TspGWI | ACGGA | 1 cut(s) | 2385 |
| TspRI | CASTG | 6 cut(s) | 1237, 1446, 1581, 2296, 2671, 2950 |
| VpaK11BI | GGWCC | 4 cut(s) | 327, 538, 2530, 2982 |
| VspI | ATTAAT | 4 cut(s) | 491, 1206, 1239, 2433 |
| XceI | RCATGY | 2 cut(s) | 1626, 1890 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2809 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2403, 2844 |
| XspI | CTAG | 4 cut(s) | 941, 2030, 2057, 3255 |
| Zsp2I | ATGCAT | 1 cut(s) | 2194 |