AT5G59990

CCT motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003558
Physical Location & Seq
Reverse (-)
24150934 .. 24153201
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59990.2

Sequence Viewer

Length: 726 bp
ATGTGTGGACACGTCAGCACTTCTATAACCTCCGGCGACAACTGTCCATGTTTTCTATACTCCGACGACATAGTGGCTCCTCCTCAGCTGCTTGATCATCATCATCATCAGTTCCCGCCTCCGCCTTTGGCGCTTCTTATGATGAGCCAAAACTCTCTATACGCGGCCGAGGCGGTTTCAGGGTTCGGTTACTTTGATTCCGGCATGAACGGTGGTGGTGGAAGCAGCAGCTGCGACTCGCCAAGCTCTATGGGGAGTGGCGGAGAGAGTCTTGTTATGCAGAGGAGTGTTAGTAGCCATAATGGCTTTTCCGGTAATTACACAGCGGCCCATGATTTCGTTAACGATGATGATGGGCCAGTGAGACGGGCCCTTAGCGCCGGAGATCTACCCAGGAGTAGCAGAAGAGAGAGCAGTACGGTGTGGAGTGAGAGCAATGCAATAATAGAAGGAATGAGCAAAGCCTACAAGTATAGTCCTGAGGAGAAGAAAGAAAAGATCGAGAAATATCGTAGCAAACGAAACCTTAGGAATTTCAACAAGAGGATTAAGTACGAATGCAGGAAGACATTAGCGGACAGTAGGCCAAGAATAAGAGGGAGATTTGCAAGAAATGATGAGATCTCACAACAAGAACAAGTTGATGTTATGGAAGCCGTGGTAGGAGATGTCGACACGTGGGCATCTTTTCTTGATTCTTTCTCTGCTAATCACTTCCTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CCT

Protein Analysis

241

Amino Acids

26.59

Weight (kDa)

6.06

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 672
AccII CGCG 1 cut(s) 164
AciI CCGC 7 cut(s) 116, 122, 164, 173, 261, 326, 575
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 532
AcvI CACGTG 1 cut(s) 678
AfaI GTAC 2 cut(s) 418, 554
AflIII ACRYGT 2 cut(s) 10, 675
AgsI TTSAA 1 cut(s) 538
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 1 cut(s) 392
AluBI AGCT 3 cut(s) 88, 231, 246
AluI AGCT 3 cut(s) 88, 231, 246
Alw26I GTCTC 1 cut(s) 358
AlwNI CAGNNNCTG 1 cut(s) 231
AoxI GGCC 5 cut(s) 165, 327, 356, 369, 584
ApaI GGGCCC 1 cut(s) 373
ApeKI GCWGC 4 cut(s) 88, 225, 228, 231
ApoI RAATTY 1 cut(s) 532
AspLEI GCGC 2 cut(s) 133, 380
AspS9I GGNCC 4 cut(s) 328, 356, 369, 370
AxyI CCTNAGG 2 cut(s) 480, 527
BaeGI GKGCMC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 373
BbrPI CACGTG 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 572
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 4 cut(s) 75, 218, 237, 240
BccI CCATC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 641
BciT130I CCWGG 1 cut(s) 394
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 358
BfoI RGCGCY 2 cut(s) 134, 381
BglI GCCNNNNNGGC 1 cut(s) 303
BglII AGATCT 2 cut(s) 385, 621
BisI GCNGC 6 cut(s) 89, 165, 226, 229, 232, 327
BlsI GCNGC 6 cut(s) 90, 166, 227, 230, 233, 328
Bme1390I CCNGG 1 cut(s) 394
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 4 cut(s) 328, 356, 369, 370
BmiI GGNNCC 2 cut(s) 78, 371
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 692
BoxI GACNNNNGTC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 572
Bpu10I CCTNAGC 2 cut(s) 84, 374
BsaAI YACGTR 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 168, 392, 657
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bse1I ACTGG 1 cut(s) 359
Bse21I CCTNAGG 2 cut(s) 480, 527
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 3 cut(s) 168, 392, 657
BseJI GATNNNNATC 1 cut(s) 99
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 98, 471
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 4 cut(s) 69, 72, 298, 497
BseSI GKGCMC 1 cut(s) 373
BseX3I CGGCCG 1 cut(s) 165
BseXI GCAGC 4 cut(s) 75, 218, 237, 240
Bsh1236I CGCG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 5 cut(s) 167, 329, 358, 371, 586
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 4 cut(s) 33, 201, 312, 381
BsmAI GTCTC 1 cut(s) 358
BsmBI CGTCTC 1 cut(s) 358
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 5 cut(s) 167, 329, 358, 371, 586
Bsp120I GGGCCC 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 4 cut(s) 94, 385, 498, 621
BspACI CCGC 7 cut(s) 116, 122, 164, 173, 261, 326, 575
BspANI GGCC 5 cut(s) 167, 329, 358, 371, 586
BspCNI CTCAG 2 cut(s) 97, 472
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 78, 371
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 168, 392, 657
BssMI GATC 4 cut(s) 94, 385, 498, 621
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 4 cut(s) 44, 212, 421, 581
Bst6I CTCTTC 1 cut(s) 400
BstAPI GCANNNNNTGC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 678
BstDEI CTNAG 4 cut(s) 84, 374, 480, 527
BstDSI CCRYGG 1 cut(s) 657
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 2 cut(s) 134, 381
BstHHI GCGC 2 cut(s) 133, 380
BstKTI GATC 4 cut(s) 97, 388, 501, 624
BstMAI GTCTC 1 cut(s) 358
BstMBI GATC 4 cut(s) 94, 385, 498, 621
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 5 cut(s) 130, 170, 231, 303, 377
BstNI CCWGG 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 4 cut(s) 75, 218, 237, 240
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 2 cut(s) 385, 621
BstYI RGATCY 2 cut(s) 385, 621
BstZI CGGCCG 1 cut(s) 165
Bsu36I CCTNAGG 2 cut(s) 480, 527
BsuRI GGCC 5 cut(s) 167, 329, 358, 371, 586
BtgI CCRYGG 1 cut(s) 657
BtrI CACGTC 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 231
CfoI GCGC 2 cut(s) 133, 380
Cfr13I GGNCC 4 cut(s) 328, 356, 369, 370
Csp6I GTAC 2 cut(s) 417, 553
CviAII CATG 3 cut(s) 48, 205, 332
CviQI GTAC 2 cut(s) 417, 553
DdeI CTNAG 4 cut(s) 84, 374, 480, 527
DpnI GATC 4 cut(s) 96, 387, 500, 623
DpnII GATC 4 cut(s) 94, 385, 498, 621
EaeI YGGCCR 1 cut(s) 165
EagI CGGCCG 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
EciI GGCGGA 2 cut(s) 111, 276
EclXI CGGCCG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 373
Eco52I CGGCCG 1 cut(s) 165
Eco72I CACGTG 1 cut(s) 678
Eco81I CCTNAGG 2 cut(s) 480, 527
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 3 cut(s) 51, 208, 335
FatI CATG 3 cut(s) 47, 204, 331
FauI CCCGC 1 cut(s) 123
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 6 cut(s) 89, 165, 226, 229, 232, 327
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 6 cut(s) 89, 165, 226, 229, 232, 327
GlaI GCGC 2 cut(s) 132, 379
GluI GCNGC 6 cut(s) 89, 165, 226, 229, 232, 327
HaeII RGCGCY 2 cut(s) 134, 381
HaeIII GGCC 5 cut(s) 167, 329, 358, 371, 586
HapII CCGG 4 cut(s) 33, 201, 312, 381
HhaI GCGC 2 cut(s) 133, 380
Hin1II CATG 3 cut(s) 51, 208, 335
Hin6I GCGC 2 cut(s) 131, 378
HinP1I GCGC 2 cut(s) 131, 378
HincII GTYRAC 2 cut(s) 343, 673
HindII GTYRAC 2 cut(s) 343, 673
HinfI GANTC 4 cut(s) 197, 236, 268, 695
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 4 cut(s) 33, 201, 312, 381
Hpy166II GTNNAC 3 cut(s) 8, 343, 673
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 479, 502, 692
Hpy8I GTNNAC 3 cut(s) 8, 343, 673
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 4 cut(s) 44, 212, 421, 581
HpyCH4IV ACGT 2 cut(s) 12, 677
HpyCH4V TGCA 4 cut(s) 280, 440, 561, 608
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 170, 231, 303, 377
HpyF3I CTNAG 4 cut(s) 84, 374, 480, 527
HpySE526I ACGT 2 cut(s) 12, 677
Hsp92II CATG 3 cut(s) 51, 208, 335
HspAI GCGC 2 cut(s) 131, 378
Ksp22I TGATCA 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 94, 385, 498, 621
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 4 cut(s) 75, 218, 237, 240
LweI GCATC 1 cut(s) 692
MaeII ACGT 2 cut(s) 12, 677
MaeIII GTNAC 1 cut(s) 188
MalI GATC 4 cut(s) 96, 387, 500, 623
MboI GATC 4 cut(s) 94, 385, 498, 621
MboII GAAGA 3 cut(s) 417, 499, 577
MflI RGATCY 2 cut(s) 385, 621
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 316, 532
MlyI GAGTC 2 cut(s) 230, 277
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 9 cut(s) 40, 90, 93, 129, 163, 276, 475, 537, 590
MseI TTAA 2 cut(s) 342, 549
MspA1I CMGCKG 3 cut(s) 88, 231, 326
MspI CCGG 4 cut(s) 33, 201, 312, 381
MspR9I CCNGG 1 cut(s) 394
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 5 cut(s) 130, 170, 231, 303, 377
NdeII GATC 4 cut(s) 94, 385, 498, 621
NlaIII CATG 3 cut(s) 51, 208, 335
NlaIV GGNNCC 2 cut(s) 78, 371
NmeAIII GCCGAG 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 517
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 2 cut(s) 197, 695
PkrI GCNGC 6 cut(s) 90, 166, 227, 230, 233, 328
PleI GAGTC 2 cut(s) 230, 276
PmaCI CACGTG 1 cut(s) 678
PmlI CACGTG 1 cut(s) 678
PpsI GAGTC 2 cut(s) 230, 276
Ppu21I YACGTR 1 cut(s) 678
PshAI GACNNNNGTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 392
PspCI CACGTG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 78, 371
PspOMI GGGCCC 1 cut(s) 369
PspPI GGNCC 4 cut(s) 328, 356, 369, 370
PstNI CAGNNNCTG 1 cut(s) 231
PsuI RGATCY 2 cut(s) 385, 621
PvuII CAGCTG 2 cut(s) 88, 231
RsaI GTAC 2 cut(s) 418, 554
RsaNI GTAC 2 cut(s) 417, 553
SalI GTCGAC 1 cut(s) 671
SaqAI TTAA 2 cut(s) 342, 549
SatI GCNGC 6 cut(s) 89, 165, 226, 229, 232, 327
Sau3AI GATC 4 cut(s) 94, 385, 498, 621
Sau96I GGNCC 4 cut(s) 328, 356, 369, 370
SchI GAGTC 2 cut(s) 230, 277
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 1 cut(s) 373
SetI ASST 7 cut(s) 15, 32, 90, 233, 248, 528, 680
SfaNI GCATC 1 cut(s) 692
Sse9I AATT 2 cut(s) 316, 532
SsiI CCGC 7 cut(s) 116, 122, 164, 173, 261, 326, 575
StyD4I CCNGG 1 cut(s) 392
TaaI ACNGT 4 cut(s) 44, 212, 421, 581
TaiI ACGT 2 cut(s) 15, 680
TaqI TCGA 2 cut(s) 501, 672
TasI AATT 2 cut(s) 316, 532
TauI GCSGC 2 cut(s) 167, 329
TfiI GAWTC 2 cut(s) 197, 695
Tru1I TTAA 2 cut(s) 342, 549
Tru9I TTAA 2 cut(s) 342, 549
TscAI CASTG 1 cut(s) 366
TseI GCWGC 4 cut(s) 88, 225, 228, 231
TspDTI ATGAA 1 cut(s) 221
TspRI CASTG 1 cut(s) 366
XapI RAATTY 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.