Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

42882343 .. 42884787

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0346800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGAAAACAAAACCCTCATGCATAAAAGGAAACGGACAAAGGTGGTTAAGGAAGGTAGGTTGGATAAACGTCCTTGCTCCAAGGGAGGTAATGAGTTTCCCAAGTTGGTTGAGAAAGTAGTTGTCAACCGTGAGGATGTCACTGAGGCTGTTGAAGAAAATGTCAATCTGACCAAGGAGCCGGAGAATGAGGAGGAGGTAGAATACGTGGATTTGACGATGTGTCCACCTACATCAAAGTCAAAGGTAGCTGAGGTTGAATGCAAGTTGGCAATAGGTTCTGTTGAACATATTGTTGCTTGTGCCACTGTTATGGAATGCGAGGATCCTTCCCAACTCGTTCATGGCACTCCACTAGGGGATGGCAATATGCGCGTTTCTATCTATGCCGCGCTTGAGGAGAAAGCAAAAGTGCCATTTCCTGTGAAAGATGAAATTGAAACAGTGAAGCAGGCTATGGGGAGTTGGGTAGCATGGCCTAAACACCTAGTCATAAAATCACATCTCAAGAAACCTCCCAAGAATAGTGCTGAAAAGAAGAAGAAAAGGAAAGAGATAGGGGAAGAGGACTCGGAGATTGAATTTGGCTTGGCTAAATTGGCACCATCATTACCAGCTTCATTGAAGATGTTATGTTTGTGGGGTGAAGATGCATTCAAAGATGGGCATACAATCAGCTTCTACATGGAGCCTGAAGTGTTTGGATTTTCTCGCAAGACTTATATATTGGGAAAAGATGTTCGGCGACTGGCAAGCATGAGGGAATTAACTGGAACTTGCATTGTTGTGTACCAGAGGTACCTCTATGATCAGTTGAAGGCTTATAAAATGCTTGACATGGTTGCATTTGTTGACCTTTCACTTGTTGGTGCTGTGGGGTGTGGGAATGGAACTGTCAGGGCCCAACACATCAAAGATAGGCTTGCAACTGCTAAACCAGGACAGATGTTCATGTTGCCATTTAACTCGGGTGATCATTGGACTTTGACACTTGTTGATCCGGACAAACAAAGCGCCTATTTTATGGACCCGCTAAAAAGACGCTTACCCACAGGAGATTGGATGTCTATCGTGGAAACTGCTATGCGTATGTATAATGCTGAAAAGAAAAAGCAAGGCCGGAGTTCAGTCCAATGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGTGGATACTTTATCATGCGATACATGAGAGATATCATTGAGGATAAAGACATGTCACTGTTTCCTACGAAGGTATCGACATATATATATAGCTATAAATATAGTCACTTGACTCAATTTCTCAGAACTTTGTTATTATGTCCATGCCTTATTCACCAAAAAGTTTGGTCACTAATCCTTTTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

455

Amino Acids

51.82

Weight (kDa)

8.8

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	86 - 165	2.3e-13	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	315 - 409	2.6e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	825
Acc65I	GGTACC	1 cut(s)	798
AccB1I	GGYRCC	2 cut(s)	601, 798
AccII	CGCG	2 cut(s)	375, 392
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	2 cut(s)	390, 1031
AclWI	GGATC	3 cut(s)	320, 333, 992
AcsI	RAATTY	2 cut(s)	581, 1141
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	791, 800
AflIII	ACRYGT	1 cut(s)	1230
AgsI	TTSAA	8 cut(s)	155, 260, 287, 440, 581, 625, 658, 817
AhdI	GACNNNNNGTC	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	937
AloI	GAACNNNNNNTCC	2 cut(s)	723, 755
AluBI	AGCT	4 cut(s)	251, 617, 678, 1272
AluI	AGCT	4 cut(s)	251, 617, 678, 1272
AlwI	GGATC	3 cut(s)	320, 333, 992
Ama87I	CYCGRG	1 cut(s)	967
Aor13HI	TCCGGA	1 cut(s)	1000
AoxI	GGCC	3 cut(s)	476, 900, 1117
ApaI	GGGCCC	1 cut(s)	904
ApoI	RAATTY	2 cut(s)	581, 1141
Asp718I	GGTACC	1 cut(s)	798
AspLEI	GCGC	3 cut(s)	375, 394, 1016
AspS9I	GGNCC	3 cut(s)	900, 901, 1027
AsuHPI	GGTGA	3 cut(s)	656, 983, 1325
AvaI	CYCGRG	1 cut(s)	967
AvaII	GGWCC	1 cut(s)	1027
BaeGI	GKGCMC	1 cut(s)	904
BaeI	ACNNNNGTAYC	2 cut(s)	1236, 1269
BamHI	GGATCC	1 cut(s)	325
BanI	GGYRCC	2 cut(s)	601, 798
BanII	GRGCYC	1 cut(s)	904
BbvCI	CCTCAGC	1 cut(s)	252
BccI	CCATC	3 cut(s)	356, 613, 656
BciT130I	CCWGG	1 cut(s)	939
BciVI	GTATCC	1 cut(s)	1178
BclI	TGATCA	2 cut(s)	808, 973
BfaI	CTAG	3 cut(s)	356, 488, 1167
BfoI	RGCGCY	1 cut(s)	1017
BfuI	GTATCC	1 cut(s)	1178
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	939
Bme18I	GGWCC	1 cut(s)	1027
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	900, 901, 1027
BmiI	GGNNCC	7 cut(s)	180, 327, 603, 690, 800, 902, 1029
BmrFI	CCNGG	1 cut(s)	939
BmsI	GCATC	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	416, 491
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	1067
BsaJI	CCNNGG	2 cut(s)	81, 174
BsaWI	WCCGGW	1 cut(s)	1000
Bse1I	ACTGG	2 cut(s)	753, 775
Bse8I	GATNNNNATC	1 cut(s)	1067
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	1 cut(s)	939
BseDI	CCNNGG	2 cut(s)	81, 174
BseGI	GGATG	3 cut(s)	142, 367, 1068
BseJI	GATNNNNATC	1 cut(s)	1067
BseMII	CTCAG	3 cut(s)	135, 243, 1315
BseNI	ACTGG	2 cut(s)	753, 775
BseRI	GAGGAG	3 cut(s)	206, 209, 413
BseSI	GKGCMC	1 cut(s)	904
Bsh1236I	CGCG	2 cut(s)	375, 392
BshFI	GGCC	3 cut(s)	478, 902, 1119
BshNI	GGYRCC	2 cut(s)	601, 798
BsiHKCI	CYCGRG	1 cut(s)	967
BsiSI	CCGG	3 cut(s)	182, 1001, 1120
BsmI	GAATGC	4 cut(s)	266, 323, 653, 1152
BsnI	GGCC	3 cut(s)	478, 902, 1119
BsoBI	CYCGRG	1 cut(s)	967
Bsp120I	GGGCCC	1 cut(s)	900
Bsp1286I	GDGCHC	1 cut(s)	904
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp143I	GATC	4 cut(s)	325, 808, 973, 997
BspACI	CCGC	2 cut(s)	390, 1031
BspANI	GGCC	3 cut(s)	478, 902, 1119
BspCNI	CTCAG	3 cut(s)	136, 244, 1314
BspEI	TCCGGA	1 cut(s)	1000
BspFNI	CGCG	2 cut(s)	375, 392
BspLI	GGNNCC	7 cut(s)	180, 327, 603, 690, 800, 902, 1029
BspPI	GGATC	3 cut(s)	320, 333, 992
BspT107I	GGYRCC	2 cut(s)	601, 798
BsrI	ACTGG	2 cut(s)	753, 775
BssECI	CCNNGG	2 cut(s)	81, 174
BssMI	GATC	4 cut(s)	325, 808, 973, 997
BssT1I	CCWWGG	2 cut(s)	81, 174
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	5 cut(s)	131, 310, 445, 895, 1239
Bst6I	CTCTTC	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	4 cut(s)	453, 754, 924, 1150
BstDEI	CTNAG	3 cut(s)	144, 252, 1301
BstF5I	GGATG	3 cut(s)	142, 367, 1068
BstFNI	CGCG	2 cut(s)	375, 392
BstH2I	RGCGCY	1 cut(s)	1017
BstHHI	GCGC	3 cut(s)	375, 394, 1016
BstKTI	GATC	4 cut(s)	328, 811, 976, 1000
BstMBI	GATC	4 cut(s)	325, 808, 973, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 599
BstNI	CCWGG	1 cut(s)	939
BstNSI	RCATGY	1 cut(s)	1234
BstSCI	CCNGG	1 cut(s)	937
BstSLI	GKGCMC	1 cut(s)	904
BstUI	CGCG	2 cut(s)	375, 392
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	1178
BsuRI	GGCC	3 cut(s)	478, 902, 1119
BtsCI	GGATG	3 cut(s)	142, 367, 1068
BtsIMutI	CAGTG	4 cut(s)	141, 306, 450, 1235
Cac8I	GCNNGC	4 cut(s)	453, 754, 924, 1150
CfoI	GCGC	3 cut(s)	375, 394, 1016
Cfr13I	GGNCC	3 cut(s)	900, 901, 1027
CseI	GACGC	1 cut(s)	1050
Csp6I	GTAC	2 cut(s)	790, 799
CspCI	CAANNNNNGTGG	2 cut(s)	1162, 1197
CviQI	GTAC	2 cut(s)	790, 799
DdeI	CTNAG	3 cut(s)	144, 252, 1301
DpnI	GATC	4 cut(s)	327, 810, 975, 999
DpnII	GATC	4 cut(s)	325, 808, 973, 997
DriI	GACNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	81, 174
Eco24I	GRGCYC	1 cut(s)	904
Eco32I	GATATC	1 cut(s)	1213
Eco47I	GGWCC	1 cut(s)	1027
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	967
EcoO109I	RGGNCCY	1 cut(s)	900
EcoRII	CCWGG	1 cut(s)	937
EcoRV	GATATC	1 cut(s)	1213
EcoT14I	CCWWGG	2 cut(s)	81, 174
EcoT22I	ATGCAT	2 cut(s)	24, 655
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	2 cut(s)	81, 174
FalI	AAGNNNNNCTT	2 cut(s)	906, 938
FauI	CCCGC	1 cut(s)	1038
FbaI	TGATCA	2 cut(s)	808, 973
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	3 cut(s)	149, 374, 1075
FriOI	GRGCYC	1 cut(s)	904
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	3 cut(s)	356, 488, 1167
GlaI	GCGC	3 cut(s)	374, 393, 1015
GluI	GCNGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	1017
HaeIII	GGCC	3 cut(s)	478, 902, 1119
HapII	CCGG	3 cut(s)	182, 1001, 1120
HgaI	GACGC	1 cut(s)	1050
HhaI	GCGC	3 cut(s)	375, 394, 1016
Hin6I	GCGC	3 cut(s)	373, 392, 1014
HinP1I	GCGC	3 cut(s)	373, 392, 1014
HincII	GTYRAC	2 cut(s)	127, 853
HindII	GTYRAC	2 cut(s)	127, 853
HinfI	GANTC	2 cut(s)	569, 1291
HpaII	CCGG	3 cut(s)	182, 1001, 1120
HphI	GGTGA	3 cut(s)	656, 983, 1325
Hpy166II	GTNNAC	4 cut(s)	127, 227, 790, 853
Hpy188I	TCNGA	3 cut(s)	171, 574, 1304
Hpy188III	TCNNGA	2 cut(s)	508, 1001
Hpy8I	GTNNAC	4 cut(s)	127, 227, 790, 853
HpyAV	CCTTC	4 cut(s)	47, 339, 811, 1243
HpyCH4III	ACNGT	5 cut(s)	131, 310, 445, 895, 1239
HpyCH4IV	ACGT	2 cut(s)	70, 207
HpyCH4V	TGCA	6 cut(s)	22, 264, 653, 780, 845, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 599
HpyF3I	CTNAG	3 cut(s)	144, 252, 1301
HpySE526I	ACGT	2 cut(s)	70, 207
HspAI	GCGC	3 cut(s)	373, 392, 1014
Kpn2I	TCCGGA	1 cut(s)	1000
KpnI	GGTACC	1 cut(s)	802
Ksp22I	TGATCA	2 cut(s)	808, 973
Kzo9I	GATC	4 cut(s)	325, 808, 973, 997
LmnI	GCTCC	3 cut(s)	83, 178, 688
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	3 cut(s)	356, 488, 1167
MaeII	ACGT	2 cut(s)	70, 207
MaeIII	GTNAC	4 cut(s)	139, 1233, 1283, 1347
MalI	GATC	4 cut(s)	327, 810, 975, 999
MboI	GATC	4 cut(s)	325, 808, 973, 997
MboII	GAAGA	6 cut(s)	167, 550, 553, 575, 637, 659
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	904
MluCI	AATT	6 cut(s)	435, 581, 596, 764, 1141, 1295
MlyI	GAGTC	2 cut(s)	563, 1285
MmeI	TCCRAC	1 cut(s)	42
Mph1103I	ATGCAT	2 cut(s)	24, 655
MroI	TCCGGA	1 cut(s)	1000
MseI	TTAA	3 cut(s)	48, 767, 963
MslI	CAYNNNNRTG	2 cut(s)	311, 785
MspI	CCGG	3 cut(s)	182, 1001, 1120
MspR9I	CCNGG	1 cut(s)	939
Mva1269I	GAATGC	4 cut(s)	266, 323, 653, 1152
MvaI	CCWGG	1 cut(s)	939
MvnI	CGCG	2 cut(s)	375, 392
MwoI	GCNNNNNNNGC	2 cut(s)	372, 599
NdeII	GATC	4 cut(s)	325, 808, 973, 997
NlaIV	GGNNCC	7 cut(s)	180, 327, 603, 690, 800, 902, 1029
NmuCI	GTSAC	4 cut(s)	139, 1233, 1283, 1347
NsiI	ATGCAT	2 cut(s)	24, 655
NspI	RCATGY	1 cut(s)	1234
PciI	ACATGT	1 cut(s)	1230
PcsI	WCGNNNNNNNCGW	1 cut(s)	1253
PctI	GAATGC	4 cut(s)	266, 323, 653, 1152
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	563, 1285
PpsI	GAGTC	2 cut(s)	563, 1285
Ppu21I	YACGTR	1 cut(s)	208
PscI	ACATGT	1 cut(s)	1230
PsiI	TTATAA	1 cut(s)	825
Psp6I	CCWGG	1 cut(s)	937
PspGI	CCWGG	1 cut(s)	937
PspN4I	GGNNCC	7 cut(s)	180, 327, 603, 690, 800, 902, 1029
PspOMI	GGGCCC	1 cut(s)	900
PspPI	GGNCC	3 cut(s)	900, 901, 1027
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	791, 800
RsaNI	GTAC	2 cut(s)	790, 799
RseI	CAYNNNNRTG	2 cut(s)	311, 785
SaqAI	TTAA	3 cut(s)	48, 767, 963
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	4 cut(s)	325, 808, 973, 997
Sau96I	GGNCC	3 cut(s)	900, 901, 1027
SchI	GAGTC	2 cut(s)	563, 1285
ScrFI	CCNGG	1 cut(s)	939
SduI	GDGCHC	1 cut(s)	904
SfaNI	GCATC	1 cut(s)	640
SinI	GGWCC	1 cut(s)	1027
SmiMI	CAYNNNNRTG	2 cut(s)	311, 785
SmlI	CTYRAG	2 cut(s)	395, 506
SmoI	CTYRAG	2 cut(s)	395, 506
Sse9I	AATT	6 cut(s)	435, 581, 596, 764, 1141, 1295
SsiI	CCGC	2 cut(s)	390, 1031
SspMI	CTAG	3 cut(s)	356, 488, 1167
StyD4I	CCNGG	1 cut(s)	937
StyI	CCWWGG	2 cut(s)	81, 174
TaaI	ACNGT	5 cut(s)	131, 310, 445, 895, 1239
TaiI	ACGT	2 cut(s)	73, 210
TaqI	TCGA	1 cut(s)	1256
TasI	AATT	6 cut(s)	435, 581, 596, 764, 1141, 1295
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	48, 767, 963
Tru9I	TTAA	3 cut(s)	48, 767, 963
TscAI	CASTG	4 cut(s)	148, 313, 450, 1242
TseFI	GTSAC	4 cut(s)	139, 1233, 1283, 1347
Tsp45I	GTSAC	4 cut(s)	139, 1233, 1283, 1347
TspDTI	ATGAA	4 cut(s)	332, 447, 609, 940
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	4 cut(s)	148, 313, 450, 1242
VpaK11BI	GGWCC	1 cut(s)	1027
XapI	RAATTY	2 cut(s)	581, 1141
XceI	RCATGY	1 cut(s)	1234
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	3 cut(s)	356, 488, 1167
Zsp2I	ATGCAT	2 cut(s)	24, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.