Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6854585 .. 6855583

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTACGGACACAACAGCACCGCATTCCCACGCGCCCCCGATTTTCAGTATCATCACGGCTCGCATGCGGCTCTTCCGTTGCCGTATCATCACGACCACCTTGTCTCCGCCGAGTTCAGCAACAGCTGTAGCAGCGGCTCCAGCAGCTACGGAGCCTCGCCGATCAGCAACGGGGCTCACGAGTGCTACGGAGAACCGGACCCGAACATGATTCAGCCAAGCGTCAGCACTTGCGGGACCCACAAATTGGTCTCCGACTTGCTGGAGTCAGAAACCGGCCATGTCCGCCGGGTTTGTAGCACTGGGGACTTGGATTTGCAGACAATTAATAGCAAGAACAGTAATGGGGTGCAAGTAGTGCAGCAATTGCAGTATGGTGGTTATAATAGATCATCATCAGAAAGTAGTTCGCTGTCGAGTGAGAGCAGTATGATTATAGAAGGGATGAGCAAAGCCTGTCGGTATAGTCCCGAGGAGAAGAAGGAGAGAATTGAGAGGTATAGAAGCAAGCGCAACCAAAGAAACTTCAACAAGACCATTAAGGCAATACCACTCTACTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

189

Amino Acids

20.81

Weight (kDa)

7.14

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	21, 68, 108, 135, 234, 286
AcoI	YGGCCR	1 cut(s)	277
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	529, 562
AluBI	AGCT	2 cut(s)	126, 147
AluI	AGCT	2 cut(s)	126, 147
Alw26I	GTCTC	2 cut(s)	109, 256
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	3 cut(s)	132, 144, 361
AseI	ATTAAT	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	35, 513
AspS9I	GGNCC	2 cut(s)	199, 237
AsuC2I	CCSGG	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	199, 237
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	144, 156, 373
BceAI	ACGGC	2 cut(s)	67, 73
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	109, 256
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	5 cut(s)	69, 133, 136, 145, 362
BlsI	GCNGC	5 cut(s)	70, 134, 137, 146, 363
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	199, 237
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	199, 237
BmiI	GGNNCC	5 cut(s)	139, 154, 201, 238, 239
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	312
BpmI	CTGGAG	2 cut(s)	124, 284
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	307
Bse8I	GATNNNNATC	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	450
BseJI	GATNNNNATC	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	144, 156, 373
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	3 cut(s)	197, 276, 289
BslFI	GGGAC	3 cut(s)	250, 320, 453
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	2 cut(s)	109, 256
BsmFI	GGGAC	3 cut(s)	250, 320, 453
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	162, 389
BspACI	CCGC	6 cut(s)	21, 68, 108, 135, 234, 286
BspANI	GGCC	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	5 cut(s)	139, 154, 201, 238, 239
BspQI	GCTCTTC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	162, 389
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	2 cut(s)	358, 367
BstC8I	GCNNGC	3 cut(s)	62, 66, 509
BstF5I	GGATG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	35, 513
BstKTI	GATC	2 cut(s)	165, 392
BstMAI	GTCTC	2 cut(s)	109, 256
BstMBI	GATC	2 cut(s)	162, 389
BstMWI	GCNNNNNNNGC	6 cut(s)	132, 141, 144, 285, 358, 367
BstNSI	RCATGY	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	144, 156, 373
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	450
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	3 cut(s)	62, 66, 509
CfoI	GCGC	2 cut(s)	35, 513
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	199, 237
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	3 cut(s)	65, 208, 281
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	164, 391
DpnII	GATC	2 cut(s)	162, 389
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	2 cut(s)	97, 275
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	199, 237
Eco88I	CYCGRG	1 cut(s)	470
EcoO109I	RGGNCCY	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	3 cut(s)	68, 211, 284
FaiI	YATR	9 cut(s)	66, 209, 282, 375, 384, 431, 437, 465, 501
FaqI	GGGAC	3 cut(s)	250, 320, 453
FatI	CATG	3 cut(s)	64, 207, 280
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	69, 133, 136, 145, 362
FokI	GGATG	1 cut(s)	457
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	5 cut(s)	69, 133, 136, 145, 362
GlaI	GCGC	2 cut(s)	34, 512
GluI	GCNGC	5 cut(s)	69, 133, 136, 145, 362
GsuI	CTGGAG	2 cut(s)	124, 284
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	3 cut(s)	197, 276, 289
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	2 cut(s)	35, 513
Hin1II	CATG	3 cut(s)	68, 211, 284
Hin6I	GCGC	2 cut(s)	33, 511
HinP1I	GCGC	2 cut(s)	33, 511
HinfI	GANTC	2 cut(s)	211, 266
HpaII	CCGG	3 cut(s)	197, 276, 289
Hpy188I	TCNGA	3 cut(s)	256, 271, 400
Hpy188III	TCNNGA	3 cut(s)	92, 179, 470
HpyAV	CCTTC	2 cut(s)	434, 475
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	4 cut(s)	319, 352, 361, 370
HpyF10VI	GCNNNNNNNGC	6 cut(s)	132, 141, 144, 285, 358, 367
Hsp92II	CATG	3 cut(s)	68, 211, 284
HspAI	GCGC	2 cut(s)	33, 511
KflI	GGGWCCC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	162, 389
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	2 cut(s)	143, 152
LpnPI	CCDG	7 cut(s)	154, 210, 248, 288, 289, 302, 469
Lsp1109I	GCAGC	3 cut(s)	144, 156, 373
MalI	GATC	2 cut(s)	164, 391
MboI	GATC	2 cut(s)	162, 389
MboII	GAAGA	2 cut(s)	65, 490
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	5 cut(s)	245, 324, 365, 489, 562
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	3 cut(s)	166, 466, 489
MseI	TTAA	3 cut(s)	327, 540, 565
MspA1I	CMGCKG	2 cut(s)	126, 135
MspI	CCGG	3 cut(s)	197, 276, 289
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	6 cut(s)	132, 141, 144, 285, 358, 367
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	162, 389
NlaIII	CATG	3 cut(s)	68, 211, 284
NlaIV	GGNNCC	5 cut(s)	139, 154, 201, 238, 239
NmeAIII	GCCGAG	1 cut(s)	136
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	5 cut(s)	70, 134, 137, 146, 363
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	237
PspN4I	GGNNCC	5 cut(s)	139, 154, 201, 238, 239
PspPI	GGNCC	2 cut(s)	199, 237
PspPPI	RGGWCCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	327, 540, 565
SatI	GCNGC	5 cut(s)	69, 133, 136, 145, 362
Sau3AI	GATC	2 cut(s)	162, 389
Sau96I	GGNCC	2 cut(s)	199, 237
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	102, 128, 149, 500
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	199, 237
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	5 cut(s)	245, 324, 365, 489, 562
SsiI	CCGC	6 cut(s)	21, 68, 108, 135, 234, 286
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	416
TasI	AATT	5 cut(s)	245, 324, 365, 489, 562
TauI	GCSGC	2 cut(s)	71, 138
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	3 cut(s)	327, 540, 565
Tru9I	TTAA	3 cut(s)	327, 540, 565
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	3 cut(s)	132, 144, 361
TspGWI	ACGGA	4 cut(s)	21, 66, 165, 204
TspRI	CASTG	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	199, 237
VspI	ATTAAT	1 cut(s)	327
XceI	RCATGY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.