Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

42826033 .. 42826717

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTCTCATGCATGTTATTGAAACTTCCTCTCAGGTTAGCCTCCTCAAAATTCATTTGGGGTTAACTGAAATTGTGGGTATTTCAGGTATGACAAATCAGCAACTTATTGATCATGGACACCAAATGATGGATGAGACTGATCAAGCGATTGATACACAAAGGTTCTTCATCAGACTATCAACTGAGGACTATGACTTTGAATGCTTTTGGGGTTTTCTGCAGTATGTGCAGCTTCCTCTGCCATATGTTAAAGTCAGATATCTTACTGTACCACCAGTATGGAAACCAATTGCATGTCATAGTGATTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

105

Amino Acids

12.23

Weight (kDa)

5.08

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	23, 203
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	232
ApoI	RAATTY	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	124
BclI	TGATCA	2 cut(s)	112, 142
BcoDI	GTCTC	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	47, 177
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	112, 142
BspCNI	CTCAG	2 cut(s)	46, 178
BspMAI	CTGCAG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	112, 142
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	33, 186
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	2 cut(s)	115, 145
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	112, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 241
BstNSI	RCATGY	2 cut(s)	17, 300
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	4 cut(s)	10, 14, 116, 297
CviJI	RGCY	4 cut(s)	5, 42, 235, 313
CviKI_1	RGCY	4 cut(s)	5, 42, 235, 313
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	33, 186
DpnI	GATC	2 cut(s)	114, 144
DpnII	GATC	2 cut(s)	112, 142
Eco32I	GATATC	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	4 cut(s)	13, 17, 119, 300
FatI	CATG	4 cut(s)	9, 13, 115, 296
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	2 cut(s)	112, 142
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	233
Hin1II	CATG	4 cut(s)	13, 17, 119, 300
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HpaI	GTTAAC	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	176, 260
Hpy8I	GTNNAC	1 cut(s)	66
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	13, 223, 232, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 241
HpyF3I	CTNAG	2 cut(s)	33, 186
Hsp92II	CATG	4 cut(s)	13, 17, 119, 300
Ksp22I	TGATCA	2 cut(s)	112, 142
KspAI	GTTAAC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	112, 142
LpnPI	CCDG	3 cut(s)	20, 72, 291
Lsp1109I	GCAGC	1 cut(s)	244
MalI	GATC	2 cut(s)	114, 144
MboI	GATC	2 cut(s)	112, 142
MboII	GAAGA	1 cut(s)	160
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	3 cut(s)	51, 72, 291
MnlI	CCTC	5 cut(s)	40, 53, 56, 181, 249
Mph1103I	ATGCAT	1 cut(s)	15
MseI	TTAA	2 cut(s)	65, 252
MslI	CAYNNNNRTG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	229, 241
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	112, 142
NlaIII	CATG	4 cut(s)	13, 17, 119, 300
NsiI	ATGCAT	1 cut(s)	15
NspI	RCATGY	2 cut(s)	17, 300
PctI	GAATGC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	65, 252
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	112, 142
SetI	ASST	4 cut(s)	39, 91, 167, 237
SfcI	CTRYAG	1 cut(s)	221
SgeI	CNNG	8 cut(s)	22, 26, 47, 99, 128, 158, 290, 309
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse9I	AATT	3 cut(s)	51, 72, 291
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	3 cut(s)	51, 72, 291
Tru1I	TTAA	2 cut(s)	65, 252
Tru9I	TTAA	2 cut(s)	65, 252
TseI	GCWGC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	44, 160
Van91I	CCANNNNNTGG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	2 cut(s)	17, 300
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.