Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Reverse (-)

22683541 .. 22686143

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTACGGTCACAACGGCAACGCATTCCCACGCGCCTACGACTTCGAGGGCCTGCCAATGCCTGCCCTGCCCTTCGGGACTTACAACAATGACTACCACCACCTCGGCGCGGCGGCGAATGAGTTCAGCAACAACAGCTGTAGCAGCGGCTGCAGCAGCTACGGTGGCTCGCCCACCTATGCGAGTACCACTACCACTACGACCATTCATGATCATGAGGTCGAGCCGAGCCTGATGATTCAGAGGAGTGTGAGCAGCCACTCGCTCCAGAAGAACGTCGGGACCCACCGGCTCGTCTCGGACTTGCTGGAGCTTGAGACCGGCCCCGTCCGGAGGGTTTATAGCACCGGCGACTTGGATTTGCAGAGGATTAACAATACTAATGGGGTGCAAGTGCAGCAATTGCATAGCAGCTACAGATCATCATCAGAAAGTAGTCCATTGTCAAGCGAGAGCAGTATGATCATTGAAGGAATGAGCAAAGCCTGTCGTTACAGTCCTGAGGAGAAGAAAGAGAGAATCGAGAGGTACAGAAGCAAGAGAAACCTCAGGAACTTCAACAAAACGATTAAGTATGCATGTAGGAAGACATTGGCGGACAGCAGGCCGCGCATCAGAGGGCGATTTGCAAAGAATGATGAAATTGATCAGAAGAATTCCCCTAATGTTCAGTGGAGCCAAATGAGTGGGGAGGAAGATGAAGAGGATGGCGATGGTTGGATCAACCTGCTTGATGCATTCTCTTCAATCGAATCAAATTCCTTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

256

Amino Acids

28.69

Weight (kDa)

6.08

Isoelectric Point (pI)

69.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	171 - 212	4.8e-19	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	735
AccII	CGCG	3 cut(s)	33, 110, 610
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	5 cut(s)	110, 113, 147, 596, 608
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	2 cut(s)	655, 757
AfaI	GTAC	3 cut(s)	5, 187, 530
AfiI	CCNNNNNNNGG	2 cut(s)	109, 333
AgsI	TTSAA	3 cut(s)	470, 559, 747
AluBI	AGCT	4 cut(s)	138, 159, 313, 414
AluI	AGCT	4 cut(s)	138, 159, 313, 414
Alw26I	GTCTC	2 cut(s)	301, 311
AlwI	GGATC	1 cut(s)	728
AlwNI	CAGNNNCTG	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	3 cut(s)	49, 322, 605
ApeKI	GCWGC	7 cut(s)	144, 150, 153, 156, 255, 397, 411
ApoI	RAATTY	2 cut(s)	655, 757
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	3 cut(s)	35, 110, 612
AspS9I	GGNCC	3 cut(s)	49, 282, 323
AvaII	GGWCC	1 cut(s)	282
AxyI	CCTNAGG	2 cut(s)	501, 548
BbsI	GAAGAC	1 cut(s)	593
BbvI	GCAGC	7 cut(s)	137, 156, 165, 168, 267, 409, 423
BccI	CCATC	2 cut(s)	701, 707
BceAI	ACGGC	1 cut(s)	31
BclI	TGATCA	3 cut(s)	211, 462, 646
BcoDI	GTCTC	2 cut(s)	301, 311
BfaI	CTAG	1 cut(s)	769
BfmI	CTRYAG	3 cut(s)	139, 151, 415
BfuAI	ACCTGC	1 cut(s)	735
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	3 cut(s)	49, 282, 323
BmiI	GGNNCC	4 cut(s)	283, 284, 325, 677
BmsI	GCATC	2 cut(s)	621, 724
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	251, 329
BpuEI	CTTGAG	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 333
Bse118I	RCCGGY	3 cut(s)	288, 320, 347
Bse21I	CCTNAGG	2 cut(s)	501, 548
Bse8I	GATNNNNATC	1 cut(s)	424
BseAI	TCCGGA	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	109, 333
BseMII	CTCAG	2 cut(s)	492, 562
BseRI	GAGGAG	2 cut(s)	259, 518
BseXI	GCAGC	7 cut(s)	137, 156, 165, 168, 267, 409, 423
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	3 cut(s)	33, 110, 610
BshFI	GGCC	3 cut(s)	51, 324, 607
BsiSI	CCGG	4 cut(s)	289, 321, 331, 348
BslFI	GGGAC	2 cut(s)	91, 295
BslI	CCNNNNNNNGG	2 cut(s)	109, 333
BsmAI	GTCTC	2 cut(s)	301, 311
BsmBI	CGTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	91, 295
BsmI	GAATGC	2 cut(s)	23, 737
BsnI	GGCC	3 cut(s)	51, 324, 607
Bso31I	GGTCTC	1 cut(s)	311
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	5 cut(s)	211, 419, 462, 646, 720
BspACI	CCGC	5 cut(s)	110, 113, 147, 596, 608
BspANI	GGCC	3 cut(s)	51, 324, 607
BspCNI	CTCAG	2 cut(s)	493, 561
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	3 cut(s)	33, 110, 610
BspHI	TCATGA	2 cut(s)	208, 214
BspLI	GGNNCC	4 cut(s)	283, 284, 325, 677
BspMAI	CTGCAG	1 cut(s)	155
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	311
BsrFI	RCCGGY	3 cut(s)	288, 320, 347
BssAI	RCCGGY	3 cut(s)	288, 320, 347
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	5 cut(s)	211, 419, 462, 646, 720
Bst4CI	ACNGT	3 cut(s)	8, 164, 497
Bst6I	CTCTTC	2 cut(s)	696, 748
BstAPI	GCANNNNNTGC	2 cut(s)	150, 403
BstC8I	GCNNGC	4 cut(s)	53, 63, 170, 605
BstDEI	CTNAG	2 cut(s)	501, 548
BstF5I	GGATG	1 cut(s)	712
BstFNI	CGCG	3 cut(s)	33, 110, 610
BstHHI	GCGC	3 cut(s)	35, 110, 612
BstKTI	GATC	5 cut(s)	214, 422, 465, 649, 723
BstMAI	GTCTC	2 cut(s)	301, 311
BstMBI	GATC	5 cut(s)	211, 419, 462, 646, 720
BstNSI	RCATGY	1 cut(s)	582
BstSFI	CTRYAG	3 cut(s)	139, 151, 415
BstUI	CGCG	3 cut(s)	33, 110, 610
BstV1I	GCAGC	7 cut(s)	137, 156, 165, 168, 267, 409, 423
BstV2I	GAAGAC	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	686
Bsu36I	CCTNAGG	2 cut(s)	501, 548
BsuRI	GGCC	3 cut(s)	51, 324, 607
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	677
BveI	ACCTGC	1 cut(s)	735
Cac8I	GCNNGC	4 cut(s)	53, 63, 170, 605
CaiI	CAGNNNCTG	1 cut(s)	150
CciI	TCATGA	2 cut(s)	208, 214
CfoI	GCGC	3 cut(s)	35, 110, 612
Cfr10I	RCCGGY	3 cut(s)	288, 320, 347
Cfr13I	GGNCC	3 cut(s)	49, 282, 323
Csp6I	GTAC	3 cut(s)	4, 186, 529
CviAII	CATG	3 cut(s)	209, 215, 579
CviQI	GTAC	3 cut(s)	4, 186, 529
DdeI	CTNAG	2 cut(s)	501, 548
DpnI	GATC	5 cut(s)	213, 421, 464, 648, 722
DpnII	GATC	5 cut(s)	211, 419, 462, 646, 720
Eam1104I	CTCTTC	2 cut(s)	696, 748
EarI	CTCTTC	2 cut(s)	696, 748
EciI	GGCGGA	1 cut(s)	611
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	282
Eco81I	CCTNAGG	2 cut(s)	501, 548
EcoO109I	RGGNCCY	2 cut(s)	49, 282
EcoRI	GAATTC	1 cut(s)	655
EcoT22I	ATGCAT	2 cut(s)	580, 739
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	3 cut(s)	212, 218, 582
FaiI	YATR	8 cut(s)	180, 210, 216, 342, 408, 461, 576, 580
FaqI	GGGAC	2 cut(s)	91, 295
FatI	CATG	3 cut(s)	208, 214, 578
FbaI	TGATCA	3 cut(s)	211, 462, 646
FokI	GGATG	1 cut(s)	719
FspBI	CTAG	1 cut(s)	769
GlaI	GCGC	3 cut(s)	34, 109, 611
GsuI	CTGGAG	2 cut(s)	251, 329
HaeIII	GGCC	3 cut(s)	51, 324, 607
HapII	CCGG	4 cut(s)	289, 321, 331, 348
HhaI	GCGC	3 cut(s)	35, 110, 612
Hin1II	CATG	3 cut(s)	212, 218, 582
Hin6I	GCGC	3 cut(s)	33, 108, 610
HinP1I	GCGC	3 cut(s)	33, 108, 610
HinfI	GANTC	3 cut(s)	238, 519, 752
HpaII	CCGG	4 cut(s)	289, 321, 331, 348
Hpy188I	TCNGA	5 cut(s)	243, 301, 430, 617, 651
Hpy188III	TCNNGA	9 cut(s)	76, 209, 215, 268, 280, 331, 500, 523, 550
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	82, 464
HpyCH4III	ACNGT	3 cut(s)	8, 164, 497
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	8 cut(s)	153, 364, 391, 397, 406, 578, 629, 737
HpyF3I	CTNAG	2 cut(s)	501, 548
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	212, 218, 582
HspAI	GCGC	3 cut(s)	33, 108, 610
KflI	GGGWCCC	1 cut(s)	282
Kpn2I	TCCGGA	1 cut(s)	330
Ksp22I	TGATCA	3 cut(s)	211, 462, 646
Kzo9I	GATC	5 cut(s)	211, 419, 462, 646, 720
LmnI	GCTCC	3 cut(s)	270, 310, 675
Lsp1109I	GCAGC	7 cut(s)	137, 156, 165, 168, 267, 409, 423
LweI	GCATC	2 cut(s)	621, 724
MaeI	CTAG	1 cut(s)	769
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	8, 491
MalI	GATC	5 cut(s)	213, 421, 464, 648, 722
MboI	GATC	5 cut(s)	211, 419, 462, 646, 720
MboII	GAAGA	7 cut(s)	283, 520, 598, 664, 707, 713, 735
MfeI	CAATTG	1 cut(s)	401
MluCI	AATT	4 cut(s)	401, 642, 655, 757
MmeI	TCCRAC	1 cut(s)	698
Mph1103I	ATGCAT	2 cut(s)	580, 739
MroI	TCCGGA	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	3 cut(s)	372, 570, 764
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	138, 147
MspI	CCGG	4 cut(s)	289, 321, 331, 348
MunI	CAATTG	1 cut(s)	401
Mva1269I	GAATGC	2 cut(s)	23, 737
MvnI	CGCG	3 cut(s)	33, 110, 610
NdeII	GATC	5 cut(s)	211, 419, 462, 646, 720
NlaIII	CATG	3 cut(s)	212, 218, 582
NlaIV	GGNNCC	4 cut(s)	283, 284, 325, 677
NmeAIII	GCCGAG	2 cut(s)	84, 252
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	2 cut(s)	580, 739
NspI	RCATGY	1 cut(s)	582
PagI	TCATGA	2 cut(s)	208, 214
PctI	GAATGC	2 cut(s)	23, 737
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	238, 519, 752
PpuMI	RGGWCCY	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	282
PspN4I	GGNNCC	4 cut(s)	283, 284, 325, 677
PspPI	GGNCC	3 cut(s)	49, 282, 323
PspPPI	RGGWCCY	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	138
RsaI	GTAC	3 cut(s)	5, 187, 530
RsaNI	GTAC	3 cut(s)	4, 186, 529
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	372, 570, 764
Sau3AI	GATC	5 cut(s)	211, 419, 462, 646, 720
Sau96I	GGNCC	3 cut(s)	49, 282, 323
SfaNI	GCATC	2 cut(s)	621, 724
SfcI	CTRYAG	3 cut(s)	139, 151, 415
SgrAI	CRCCGGYG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	401, 642, 655, 757
SsiI	CCGC	5 cut(s)	110, 113, 147, 596, 608
SspMI	CTAG	1 cut(s)	769
TaaI	ACNGT	3 cut(s)	8, 164, 497
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	45, 222, 522, 750
TasI	AATT	4 cut(s)	401, 642, 655, 757
TauI	GCSGC	4 cut(s)	113, 116, 150, 610
TfiI	GAWTC	3 cut(s)	238, 519, 752
Tru1I	TTAA	3 cut(s)	372, 570, 764
Tru9I	TTAA	3 cut(s)	372, 570, 764
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	7 cut(s)	144, 150, 153, 156, 255, 397, 411
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	197, 654, 714
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	2 cut(s)	655, 757
XceI	RCATGY	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	769
Zsp2I	ATGCAT	2 cut(s)	580, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.