Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Reverse (-)

6001995 .. 6004996

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G088100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTACGGACACAACAGCACCGCATTTCCACGCGCCGCCGACTTCCAGTTCCAGGGCTCGCCACCGGCTCATCCGTTGCTTTATCATGAGCAGCTGCTCGTCTCGGCTGAGTTCAGCAACAGCTGCAGCAGCGGCTCCAGCAGCTACTGCGCCTCCCCAATCAGCAGCGGGACTGGTGGTGGCGCTACGCTGATTCAGCGCAGCGTCAGCAGCCATTCACTCCAGAAGACCTCTTGCGGGACCCACAGGCTAGTCTCCGACTTACTTGAGTCGGAGACCGGCCCCGTCCGCAGGGTTTACAGCACCGGAGACTTGGATTTGCAGCTGATAAATAATATGAACAATGGAATGCCACAGCAATTGCAATATTGCGGTTACAATAGATCATCATCAGAAACTAGTCCCTTGTCGAGTGAGAGCAGTATGATCATAGAAGGGATGAGCAAAGCCTGTCCATATAATCCTGAGGAGAAGAAAGAGAGAATTGAGAGGTATAGAAACAAGCGCAACCTCAGGAACTTCAACAAGACCATTAAGTATGCTTGCCGGAAGACGTTGGCGGACAGCCGGCCACGCATCAGAGGACGATTTGCAAGGAATGATGAAATTGAGAAGAACTCTCCTGTTCAGTGGAGTCACATAAGTGGGGAGGAAGACGAGGAGGACTGCGATAGTTGGATCAACCTTCTGGATGCATTCTCTTCTATTGAATCTAATTCCATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

243

Amino Acids

27.0

Weight (kDa)

6.32

Isoelectric Point (pI)

78.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	8 cut(s)	21, 36, 132, 168, 237, 289, 372, 560
AclWI	GGATC	1 cut(s)	686
AcoI	YGGCCR	1 cut(s)	569
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	52, 237, 291
AgsI	TTSAA	2 cut(s)	523, 710
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	51
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	4 cut(s)	94, 123, 144, 325
AluI	AGCT	4 cut(s)	94, 123, 144, 325
Alw26I	GTCTC	4 cut(s)	106, 259, 269, 303
AlwI	GGATC	1 cut(s)	686
AlwNI	CAGNNNCTG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	280, 569
AspLEI	GCGC	5 cut(s)	35, 152, 185, 201, 507
AspS9I	GGNCC	2 cut(s)	240, 281
AvaII	GGWCC	1 cut(s)	240
AxyI	CCTNAGG	2 cut(s)	465, 512
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	3 cut(s)	233, 557, 660
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	4 cut(s)	106, 259, 269, 303
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	251, 399, 727
BfmI	CTRYAG	1 cut(s)	124
BfoI	RGCGCY	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	240, 281
BmiI	GGNNCC	4 cut(s)	136, 241, 242, 283
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	585, 682
BpiI	GAAGAC	3 cut(s)	233, 557, 660
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BpmI	CTGGAG	2 cut(s)	121, 206
BpuEI	CTTGAG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 237, 291
Bse118I	RCCGGY	3 cut(s)	64, 278, 567
Bse1I	ACTGG	2 cut(s)	46, 178
Bse21I	CCTNAGG	2 cut(s)	465, 512
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	70, 444, 697
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	52, 237, 291
BseMII	CTCAG	3 cut(s)	99, 456, 526
BseNI	ACTGG	2 cut(s)	46, 178
BseRI	GAGGAG	2 cut(s)	482, 674
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	282, 571
BsiSI	CCGG	5 cut(s)	65, 279, 306, 547, 568
BslFI	GGGAC	3 cut(s)	184, 253, 387
BslI	CCNNNNNNNGG	3 cut(s)	52, 237, 291
BsmAI	GTCTC	4 cut(s)	106, 259, 269, 303
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	184, 253, 387
BsmI	GAATGC	2 cut(s)	354, 695
BsnI	GGCC	2 cut(s)	282, 571
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	383, 426, 678, 723
BspACI	CCGC	8 cut(s)	21, 36, 132, 168, 237, 289, 372, 560
BspANI	GGCC	2 cut(s)	282, 571
BspCNI	CTCAG	3 cut(s)	100, 457, 525
BspFNI	CGCG	1 cut(s)	33
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	4 cut(s)	136, 241, 242, 283
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	3 cut(s)	64, 278, 567
BsrI	ACTGG	2 cut(s)	46, 178
BssAI	RCCGGY	3 cut(s)	64, 278, 567
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	4 cut(s)	383, 426, 678, 723
Bst2UI	CCWGG	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	706
BstAPI	GCANNNNNTGC	2 cut(s)	123, 147
BstC8I	GCNNGC	3 cut(s)	59, 544, 569
BstDEI	CTNAG	3 cut(s)	108, 465, 512
BstF5I	GGATG	3 cut(s)	70, 444, 697
BstFNI	CGCG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	5 cut(s)	35, 152, 185, 201, 507
BstKTI	GATC	4 cut(s)	386, 429, 681, 726
BstMAI	GTCTC	4 cut(s)	106, 259, 269, 303
BstMBI	GATC	4 cut(s)	383, 426, 678, 723
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	33
BstV2I	GAAGAC	3 cut(s)	233, 557, 660
Bsu36I	CCTNAGG	2 cut(s)	465, 512
BsuRI	GGCC	2 cut(s)	282, 571
BtsCI	GGATG	3 cut(s)	70, 444, 697
BtsIMutI	CAGTG	1 cut(s)	635
Cac8I	GCNNGC	3 cut(s)	59, 544, 569
CaiI	CAGNNNCTG	1 cut(s)	147
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	5 cut(s)	35, 152, 185, 201, 507
Cfr10I	RCCGGY	3 cut(s)	64, 278, 567
Cfr13I	GGNCC	2 cut(s)	240, 281
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	2 cut(s)	86, 721
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	108, 465, 512
DpnI	GATC	4 cut(s)	385, 428, 680, 725
DpnII	GATC	4 cut(s)	383, 426, 678, 723
EaeI	YGGCCR	1 cut(s)	569
Eam1104I	CTCTTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	706
EciI	GGCGGA	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	240
Eco81I	CCTNAGG	2 cut(s)	465, 512
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	697
EcoT38I	GRGCYC	1 cut(s)	59
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	2 cut(s)	89, 724
FaqI	GGGAC	3 cut(s)	184, 253, 387
FatI	CATG	2 cut(s)	85, 720
FauI	CCCGC	2 cut(s)	161, 230
FbaI	TGATCA	1 cut(s)	426
FokI	GGATG	3 cut(s)	57, 451, 704
FriOI	GRGCYC	1 cut(s)	59
FspBI	CTAG	3 cut(s)	251, 399, 727
GlaI	GCGC	5 cut(s)	34, 151, 184, 200, 506
GsuI	CTGGAG	2 cut(s)	121, 206
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	282, 571
HapII	CCGG	5 cut(s)	65, 279, 306, 547, 568
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	5 cut(s)	35, 152, 185, 201, 507
Hin1II	CATG	2 cut(s)	89, 724
Hin6I	GCGC	5 cut(s)	33, 150, 183, 199, 505
HinP1I	GCGC	5 cut(s)	33, 150, 183, 199, 505
HinfI	GANTC	4 cut(s)	193, 269, 634, 710
HpaII	CCGG	5 cut(s)	65, 279, 306, 547, 568
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	4 cut(s)	259, 274, 394, 581
Hpy188III	TCNNGA	5 cut(s)	86, 223, 464, 514, 689
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	428, 695
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	5 cut(s)	126, 322, 364, 593, 695
HpyF3I	CTNAG	3 cut(s)	108, 465, 512
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	2 cut(s)	89, 724
HspAI	GCGC	5 cut(s)	33, 150, 183, 199, 505
KflI	GGGWCCC	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	567
KroNI	GCCGGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	383, 426, 678, 723
LmnI	GCTCC	1 cut(s)	140
LweI	GCATC	2 cut(s)	585, 682
MaeI	CTAG	3 cut(s)	251, 399, 727
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	374, 635
MalI	GATC	4 cut(s)	385, 428, 680, 725
MboI	GATC	4 cut(s)	383, 426, 678, 723
MboII	GAAGA	6 cut(s)	238, 484, 562, 625, 665, 693
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	4 cut(s)	359, 483, 606, 715
MlyI	GAGTC	2 cut(s)	278, 643
MmeI	TCCRAC	3 cut(s)	252, 282, 656
MnlI	CCTC	9 cut(s)	163, 241, 460, 483, 521, 575, 643, 652, 655
Mph1103I	ATGCAT	1 cut(s)	697
MroNI	GCCGGC	1 cut(s)	567
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	5 cut(s)	94, 123, 132, 168, 325
MspI	CCGG	5 cut(s)	65, 279, 306, 547, 568
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	2 cut(s)	354, 695
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	33
NaeI	GCCGGC	1 cut(s)	569
NdeII	GATC	4 cut(s)	383, 426, 678, 723
NgoMIV	GCCGGC	1 cut(s)	567
NlaIII	CATG	2 cut(s)	89, 724
NlaIV	GGNNCC	4 cut(s)	136, 241, 242, 283
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	635
NsiI	ATGCAT	1 cut(s)	697
OliI	CACNNNNGTG	1 cut(s)	642
PagI	TCATGA	1 cut(s)	85
PctI	GAATGC	2 cut(s)	354, 695
PdiI	GCCGGC	1 cut(s)	569
PfeI	GAWTC	2 cut(s)	193, 710
PleI	GAGTC	2 cut(s)	277, 642
PpsI	GAGTC	2 cut(s)	277, 642
PpuMI	RGGWCCY	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	136, 241, 242, 283
PspPI	GGNCC	2 cut(s)	240, 281
PspPPI	RGGWCCY	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	147
PvuII	CAGCTG	3 cut(s)	94, 123, 325
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	1 cut(s)	534
Sau3AI	GATC	4 cut(s)	383, 426, 678, 723
Sau96I	GGNCC	2 cut(s)	240, 281
SchI	GAGTC	2 cut(s)	278, 643
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	9 cut(s)	96, 125, 146, 233, 327, 494, 513, 557, 687
SfaNI	GCATC	2 cut(s)	585, 682
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	4 cut(s)	359, 483, 606, 715
SsiI	CCGC	8 cut(s)	21, 36, 132, 168, 237, 289, 372, 560
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	3 cut(s)	251, 399, 727
StyD4I	CCNGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	1 cut(s)	410
TasI	AATT	4 cut(s)	359, 483, 606, 715
TauI	GCSGC	2 cut(s)	38, 135
TfiI	GAWTC	2 cut(s)	193, 710
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	635
TseFI	GTSAC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	2 cut(s)	353, 618
TspGWI	ACGGA	2 cut(s)	21, 63
TspRI	CASTG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	240
XspI	CTAG	3 cut(s)	251, 399, 727
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.