Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

42897405 .. 42901456

Gene Structure 4052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0347000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAACCCGGCAGAGTAGTTGCAGGACTGTTCCTGCTGTTGGCTGTCTACTGTGGAATAGACCCTTTTAAGCACAGCGCAATCTCTGACTTCCCGGACTTTGTATCCCACGAAATCGACATGCCCAGTTTGTCCTCGGTTCCTAAGGAGAGAGACACCCAGAATTCGCTTCAGAAATCGGAGATTAAGTTCCTGAACCAAGTTCAAGGCCCTGAGAGCGTCGCTTTTGACCCGCAAGGACGTGGACCATATACTGGTGTTGCCGATGGCAGAGTCTTGTTCTGGAACGGTCAGGCCTGGGTTGATTTTGCATATACTTCGCCTCATAGGTCAGAGATATGTGATCCAAAACCATCACCTATGAGTTACTTGCCAAATGAGCACATCTGTGGAAGGCCGTTGGGGCTCCGTTTTGACAAGAAAACAGGCGATTTGTACATTGCGGATGCATATTTTGGGCTGTTGAAGGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACAACTGAGGCAGAAGGGGAGCCATTGAGGTTTACTAATGATCTTGACATTGATGAAGAAGGCAATGTTTATTTTACTGATAGTAGCACCAAGTACCAGAGGAGGAACTTCCTGCAGTTGGTTTTCTCTGCAGATGATTCTGGGAGAGTTCTAAAATACAACTCAACCACCAAGGAAACAACTGTTCTCGAAAGGAATCACCAATTTCCAAATGGTCTGTCTCTGAGCAAGGACGGTTCCTTCTTTGTTTTTTGTGAAGGAGCTAAGGGCAGCTTACGCAAGTATTGGTTGAAAGGTGAAAAAGTGGGAACTTCAGAAGTGTTTGCTGTGCTGCCTGGATTTCCTGACAATGTCAGAACTAATGATAATGGTGAATTTTGGGTAGCAGTCCACTGTCGCAGGTCCCTGTACACGTATTTTTGTGCCTTATTCCCAAAATTAAGGAAAGTCATACTCAAGCTTCCCATTTCGGCTAAGATTCAGTTCCTGCTTCACATTGGGGGCTGGCCTCATGGAGTAGTTGTCAAGTACAGCCCAGAGGGTAAGCTTTTGCAGATTTTGGAAGATAGTATGGGAAAGGTTGTTAAAGCTATCAGTGAAGTGGAAGAAAAGGATGGAAAACTATGGATGGGAAGTGTTTTGATGCCCTTCATTGCAGTCTATAACATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

391

Amino Acids

43.66

Weight (kDa)

6.47

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	57 - 94	9.7e-06	Strictosidine synthase-like, N-terminal
SGL	PF08450	133 - 297	3.3e-12	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	180 - 267	8.3e-28	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	891
AccB7I	CCANNNNNTGG	2 cut(s)	254, 482
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	233, 443
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	163, 875
AcuI	CTGAAG	2 cut(s)	155, 798
AfaI	GTAC	4 cut(s)	437, 596, 911, 1031
AfiI	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	3 cut(s)	206, 466, 793
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	296, 835
AleI	CACNNNNGTG	1 cut(s)	387
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	6 cut(s)	764, 774, 961, 1048, 1091, 1172
AluI	AGCT	6 cut(s)	764, 774, 961, 1048, 1091, 1172
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	147, 726
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	988
AoxI	GGCC	5 cut(s)	208, 294, 395, 473, 1007
ApeKI	GCWGC	2 cut(s)	771, 832
ApoI	RAATTY	2 cut(s)	163, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	209, 245, 473, 903
AsuC2I	CCSGG	2 cut(s)	9, 95
AsuHPI	GGTGA	4 cut(s)	348, 692, 809, 884
AvaII	GGWCC	2 cut(s)	245, 903
AxyI	CCTNAGG	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	783, 819
BccI	CCATC	4 cut(s)	260, 361, 1109, 1123
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	2 cut(s)	298, 837
BciVI	GTATCC	1 cut(s)	115
BcnI	CCSGG	2 cut(s)	9, 95
BcoDI	GTCTC	2 cut(s)	147, 726
BfmI	CTRYAG	2 cut(s)	614, 630
BfuAI	ACCTGC	1 cut(s)	891
BfuI	GTATCC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	772, 833
BlsI	GCNGC	2 cut(s)	773, 834
Bme1390I	CCNGG	4 cut(s)	9, 95, 298, 837
Bme18I	GGWCC	2 cut(s)	245, 903
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	4 cut(s)	209, 245, 473, 903
BmiI	GGNNCC	6 cut(s)	141, 407, 474, 522, 739, 905
BmrFI	CCNGG	4 cut(s)	9, 95, 298, 837
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	436, 1134
BmuI	ACTGGG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	2 cut(s)	9, 95
BsaAI	YACGTR	1 cut(s)	915
BsaJI	CCNNGG	3 cut(s)	135, 297, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 1008, 1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
Bse1I	ACTGG	2 cut(s)	126, 259
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	3 cut(s)	438, 571, 1152
BseBI	CCWGG	2 cut(s)	298, 837
BseDI	CCNNGG	3 cut(s)	135, 297, 672
BseGI	GGATG	3 cut(s)	451, 1120, 1134
BseLI	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
BseMI	GCAATG	3 cut(s)	438, 571, 1152
BseMII	CTCAG	3 cut(s)	204, 498, 716
BseNI	ACTGG	2 cut(s)	126, 259
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	783, 819
BshFI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	9, 95
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
BsmAI	GTCTC	2 cut(s)	147, 726
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
Bsp1286I	GDGCHC	2 cut(s)	384, 408
Bsp1407I	TGTACA	2 cut(s)	435, 909
Bsp143I	GATC	2 cut(s)	343, 541
BspACI	CCGC	2 cut(s)	233, 443
BspANI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
BspCNI	CTCAG	3 cut(s)	205, 499, 717
BspLI	GGNNCC	6 cut(s)	141, 407, 474, 522, 739, 905
BspMAI	CTGCAG	2 cut(s)	618, 634
BspMI	ACCTGC	1 cut(s)	891
BspPI	GGATC	1 cut(s)	338
BsrDI	GCAATG	3 cut(s)	438, 571, 1152
BsrGI	TGTACA	2 cut(s)	435, 909
BsrI	ACTGG	2 cut(s)	126, 259
BssECI	CCNNGG	3 cut(s)	135, 297, 672
BssMI	GATC	2 cut(s)	343, 541
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	298, 837
Bst4CI	ACNGT	6 cut(s)	30, 53, 290, 685, 737, 896
BstAUI	TGTACA	2 cut(s)	435, 909
BstBAI	YACGTR	1 cut(s)	915
BstC8I	GCNNGC	1 cut(s)	1007
BstDEI	CTNAG	6 cut(s)	144, 213, 507, 725, 765, 975
BstF5I	GGATG	3 cut(s)	451, 1120, 1134
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	346, 544
BstMAI	GTCTC	2 cut(s)	147, 726
BstMBI	GATC	2 cut(s)	343, 541
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 379, 403, 777
BstNI	CCWGG	2 cut(s)	298, 837
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	4 cut(s)	7, 93, 296, 835
BstSFI	CTRYAG	2 cut(s)	614, 630
BstV1I	GCAGC	2 cut(s)	783, 819
Bsu36I	CCTNAGG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	451, 1120, 1134
BtsIMutI	CAGTG	2 cut(s)	892, 1102
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	1 cut(s)	1007
CaiI	CAGNNNCTG	1 cut(s)	988
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	209, 245, 473, 903
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	436, 595, 910, 1030
CviAII	CATG	2 cut(s)	121, 1013
CviQI	GTAC	4 cut(s)	436, 595, 910, 1030
DdeI	CTNAG	6 cut(s)	144, 213, 507, 725, 765, 975
DpnI	GATC	2 cut(s)	345, 543
DpnII	GATC	2 cut(s)	343, 541
Eco130I	CCWWGG	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	245, 903
Eco57I	CTGAAG	2 cut(s)	155, 798
Eco81I	CCTNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	209, 903
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	296, 835
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	2 cut(s)	124, 1016
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	2 cut(s)	120, 1012
FauI	CCCGC	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	772, 833
FokI	GGATG	3 cut(s)	458, 1127, 1141
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	772, 833
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	772, 833
HaeIII	GGCC	5 cut(s)	210, 296, 397, 475, 1009
HapII	CCGG	2 cut(s)	9, 95
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	124, 1016
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	2 cut(s)	959, 1046
HinfI	GANTC	4 cut(s)	273, 638, 697, 979
HpaII	CCGG	2 cut(s)	9, 95
HphI	GGTGA	4 cut(s)	348, 692, 809, 884
Hpy166II	GTNNAC	5 cut(s)	49, 245, 534, 892, 912
Hpy188I	TCNGA	7 cut(s)	88, 174, 181, 334, 726, 817, 857
Hpy188III	TCNNGA	5 cut(s)	193, 283, 545, 689, 845
Hpy8I	GTNNAC	5 cut(s)	49, 245, 534, 892, 912
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	8 cut(s)	387, 460, 473, 509, 554, 751, 752, 1159
HpyCH4III	ACNGT	6 cut(s)	30, 53, 290, 685, 737, 896
HpyCH4IV	ACGT	2 cut(s)	241, 914
HpyCH4V	TGCA	7 cut(s)	23, 311, 449, 616, 632, 1054, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 379, 403, 777
HpyF3I	CTNAG	6 cut(s)	144, 213, 507, 725, 765, 975
HpySE526I	ACGT	2 cut(s)	241, 914
Hsp92II	CATG	2 cut(s)	124, 1016
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	343, 541
LmnI	GCTCC	3 cut(s)	411, 520, 761
Lsp1109I	GCAGC	2 cut(s)	783, 819
LweI	GCATC	2 cut(s)	436, 1134
MaeII	ACGT	2 cut(s)	241, 914
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	2 cut(s)	345, 543
MboI	GATC	2 cut(s)	343, 541
MboII	GAAGA	3 cut(s)	569, 1076, 1118
MhlI	GDGCHC	2 cut(s)	384, 408
MluCI	AATT	4 cut(s)	163, 704, 875, 938
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	145, 333, 502, 522, 594, 597, 1020, 1033
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	5 cut(s)	69, 186, 941, 1086, 1174
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	2 cut(s)	9, 95
MspR9I	CCNGG	4 cut(s)	9, 95, 298, 837
MvaI	CCWGG	2 cut(s)	298, 837
MwoI	GCNNNNNNNGC	4 cut(s)	216, 379, 403, 777
NciI	CCSGG	2 cut(s)	9, 95
NdeII	GATC	2 cut(s)	343, 541
NlaIII	CATG	2 cut(s)	124, 1016
NlaIV	GGNNCC	6 cut(s)	141, 407, 474, 522, 739, 905
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	638, 697, 979
PflFI	GACNNNGTC	1 cut(s)	851
PflMI	CCANNNNNTGG	2 cut(s)	254, 482
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	773, 834
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	915
PpuMI	RGGWCCY	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	296, 835
PspGI	CCWGG	2 cut(s)	296, 835
PspN4I	GGNNCC	6 cut(s)	141, 407, 474, 522, 739, 905
PspPI	GGNCC	4 cut(s)	209, 245, 473, 903
PspPPI	RGGWCCY	1 cut(s)	903
PstI	CTGCAG	2 cut(s)	618, 634
PstNI	CAGNNNCTG	1 cut(s)	988
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	4 cut(s)	437, 596, 911, 1031
RsaNI	GTAC	4 cut(s)	436, 595, 910, 1030
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	69, 186, 941, 1086, 1174
SatI	GCNGC	2 cut(s)	772, 833
Sau3AI	GATC	2 cut(s)	343, 541
Sau96I	GGNCC	4 cut(s)	209, 245, 473, 903
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	4 cut(s)	9, 95, 298, 837
SduI	GDGCHC	2 cut(s)	384, 408
SfaNI	GCATC	2 cut(s)	436, 1134
SfcI	CTRYAG	2 cut(s)	614, 630
SinI	GGWCC	2 cut(s)	245, 903
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	4 cut(s)	163, 704, 875, 938
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	2 cut(s)	233, 443
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	7, 93, 296, 835
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	6 cut(s)	30, 53, 290, 685, 737, 896
TaiI	ACGT	2 cut(s)	244, 917
TaqI	TCGA	2 cut(s)	117, 690
TasI	AATT	4 cut(s)	163, 704, 875, 938
TatI	WGTACW	3 cut(s)	435, 909, 1029
TfiI	GAWTC	3 cut(s)	638, 697, 979
Tru1I	TTAA	5 cut(s)	69, 186, 941, 1086, 1174
Tru9I	TTAA	5 cut(s)	69, 186, 941, 1086, 1174
TscAI	CASTG	2 cut(s)	899, 1102
TseI	GCWGC	2 cut(s)	771, 832
TspDTI	ATGAA	3 cut(s)	17, 570, 1141
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	899, 1102
Tth111I	GACNNNGTC	1 cut(s)	851
Van91I	CCANNNNNTGG	2 cut(s)	254, 482
VpaK11BI	GGWCC	2 cut(s)	245, 903
XapI	RAATTY	2 cut(s)	163, 875
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.