Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003558

Physical Location & Seq

Genomic Coordinates Forward (+)

67694154 .. 67696881

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCCCCTGCCCTTTTGCTTTAAGTACCCCCCATCTCTCCTCCAGTATATTCACTCCTCTCAAACCTTCCCACAACTCCCAAAAATTCTCGACCGACTTCCCCACACGCGCCATGTACGGTCACAACGGCAACGCATTCCCACGCGCCAACGACTTCGAGGGCCTGCCAATGCCGGCCCTGCCCTTCGGGACATACAACAACGACTACCACCACCTCGGCGCGGCGGCGAATGAGTTCAGCAACAACAGCTGTAGCAGCGGCTGCAGCAGCTACGGTGGCTCGCCCACCTATGCGAGTACCACTACCACTACGACTATTCATGATCATGAGGTTGAGCCGAGCCTGATGATTCAGAGGAGTGTGAGCAGCCACTCGCTCCAGAAGAACGTTGGGACCCACCGGCTCGTCTCGGACTTGCTGGAGCTCGAGACCGGCCCCGTCCGGAGGGTTTATAGCACCGGCGACTTGGATTTGCAGAGGATTAACAATACTAATGGGGTGCAAGTGCAGCAATTGCATAGCAGCTACAGATCATCATCAGAAAGTAGTCCATTGTCAAGCGAGAGCAGTATGATCATTGAAGGAATGAGCAAAGCCTGTCGTTACAGTCCTGAGGAGAAGAAAGAGAGAATCGAGAGGTACAGAAGCAAGAGAAACCTCAGGAACTTCAACAAAACGATTAAGGTCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

231

Amino Acids

25.6

Weight (kDa)

8.66

Isoelectric Point (pI)

63.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59990 AT5G59990
fragaria_vesca	FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540 FvH4_3g34540
malus_domestica	MD03G1105500.v1.1 MD11G1118000.v1.1
prunus_persica	Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1 Prupe.6G088100_v2.0.a1
pyrus_communis	pycom03g08470 pycom11g09890
rosa_chinensis	RchiOBHm_Chr5g0062181
rosa_laevigata	RLG00000035540
rosa_multiflora	Rmu_ssc0000409.1_g000010
rosa_roxburghii	Rroxscaffold_1G00018530
rosa_rugosa	Rorug05G0346600 Rorug05G0346700 Rorug05G0346800 Rorug05G0346900 Rorug05G0347000 Rorug05G0347100 Rorug05G0347200 Rorug05G0347200
rosa_samantha	Rh5AG407600 Rh5BG421300 Rh5CG445300 Rh5DG436300
rosa_wichuraiana	Rw5G038410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	111, 147, 224
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	3 cut(s)	224, 227, 261
AclI	AACGTT	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	4 cut(s)	28, 119, 301, 644
AfiI	CCNNNNNNNGG	2 cut(s)	223, 447
AgsI	TTSAA	2 cut(s)	584, 673
AluBI	AGCT	4 cut(s)	252, 273, 427, 528
AluI	AGCT	4 cut(s)	252, 273, 427, 528
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	415, 425
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	4 cut(s)	3, 163, 177, 436
ApeKI	GCWGC	7 cut(s)	258, 264, 267, 270, 369, 511, 525
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	3 cut(s)	113, 149, 224
AspS9I	GGNCC	6 cut(s)	4, 163, 178, 396, 437, 688
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	396, 688
AxyI	CCTNAGG	2 cut(s)	615, 662
BanII	GRGCYC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	7 cut(s)	251, 270, 279, 282, 381, 523, 537
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	325, 576
BcoDI	GTCTC	2 cut(s)	415, 425
BfmI	CTRYAG	3 cut(s)	253, 265, 529
Bme18I	GGWCC	2 cut(s)	396, 688
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	6 cut(s)	4, 163, 178, 396, 437, 688
BmiI	GGNNCC	4 cut(s)	6, 397, 398, 439
BpmI	CTGGAG	3 cut(s)	28, 365, 443
BsaBI	GATNNNNATC	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 447
Bse118I	RCCGGY	4 cut(s)	175, 402, 434, 461
Bse1I	ACTGG	1 cut(s)	45
Bse21I	CCTNAGG	2 cut(s)	615, 662
Bse8I	GATNNNNATC	1 cut(s)	538
BseAI	TCCGGA	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	223, 447
BseMII	CTCAG	2 cut(s)	606, 676
BseNI	ACTGG	1 cut(s)	45
BseRI	GAGGAG	4 cut(s)	31, 48, 373, 632
BseXI	GCAGC	7 cut(s)	251, 270, 279, 282, 381, 523, 537
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	3 cut(s)	111, 147, 224
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	4 cut(s)	5, 165, 179, 438
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	5 cut(s)	176, 403, 435, 445, 462
BslFI	GGGAC	2 cut(s)	205, 409
BslI	CCNNNNNNNGG	2 cut(s)	223, 447
BsmAI	GTCTC	2 cut(s)	415, 425
BsmBI	CGTCTC	1 cut(s)	415
BsmFI	GGGAC	2 cut(s)	205, 409
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	5, 165, 179, 438
Bso31I	GGTCTC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	325, 533, 576
BspACI	CCGC	3 cut(s)	224, 227, 261
BspANI	GGCC	4 cut(s)	5, 165, 179, 438
BspCNI	CTCAG	2 cut(s)	607, 675
BspEI	TCCGGA	1 cut(s)	444
BspFNI	CGCG	3 cut(s)	111, 147, 224
BspHI	TCATGA	2 cut(s)	322, 328
BspLI	GGNNCC	4 cut(s)	6, 397, 398, 439
BspMAI	CTGCAG	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	425
BsrFI	RCCGGY	4 cut(s)	175, 402, 434, 461
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	4 cut(s)	175, 402, 434, 461
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	3 cut(s)	325, 533, 576
Bst4CI	ACNGT	3 cut(s)	122, 278, 611
BstAPI	GCANNNNNTGC	2 cut(s)	264, 517
BstC8I	GCNNGC	3 cut(s)	167, 177, 284
BstDEI	CTNAG	2 cut(s)	615, 662
BstFNI	CGCG	3 cut(s)	111, 147, 224
BstHHI	GCGC	3 cut(s)	113, 149, 224
BstKTI	GATC	3 cut(s)	328, 536, 579
BstMAI	GTCTC	2 cut(s)	415, 425
BstMBI	GATC	3 cut(s)	325, 533, 576
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	9 cut(s)	181, 249, 258, 264, 267, 270, 279, 511, 517
BstSFI	CTRYAG	3 cut(s)	253, 265, 529
BstUI	CGCG	3 cut(s)	111, 147, 224
BstV1I	GCAGC	7 cut(s)	251, 270, 279, 282, 381, 523, 537
Bsu36I	CCTNAGG	2 cut(s)	615, 662
BsuRI	GGCC	4 cut(s)	5, 165, 179, 438
Cac8I	GCNNGC	3 cut(s)	167, 177, 284
CaiI	CAGNNNCTG	1 cut(s)	264
CciI	TCATGA	2 cut(s)	322, 328
CfoI	GCGC	3 cut(s)	113, 149, 224
Cfr10I	RCCGGY	4 cut(s)	175, 402, 434, 461
Cfr13I	GGNCC	6 cut(s)	4, 163, 178, 396, 437, 688
Csp6I	GTAC	4 cut(s)	27, 118, 300, 643
CviAII	CATG	3 cut(s)	115, 323, 329
CviQI	GTAC	4 cut(s)	27, 118, 300, 643
DdeI	CTNAG	2 cut(s)	615, 662
DpnI	GATC	3 cut(s)	327, 535, 578
DpnII	GATC	3 cut(s)	325, 533, 576
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	396, 688
Eco53kI	GAGCTC	1 cut(s)	427
Eco81I	CCTNAGG	2 cut(s)	615, 662
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	3 cut(s)	163, 396, 688
EcoT38I	GRGCYC	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	3 cut(s)	118, 326, 332
FaqI	GGGAC	2 cut(s)	205, 409
FatI	CATG	3 cut(s)	114, 322, 328
FbaI	TGATCA	2 cut(s)	325, 576
FriOI	GRGCYC	1 cut(s)	429
GlaI	GCGC	3 cut(s)	112, 148, 223
GsuI	CTGGAG	3 cut(s)	28, 365, 443
HaeIII	GGCC	4 cut(s)	5, 165, 179, 438
HapII	CCGG	5 cut(s)	176, 403, 435, 445, 462
HhaI	GCGC	3 cut(s)	113, 149, 224
Hin1II	CATG	3 cut(s)	118, 326, 332
Hin6I	GCGC	3 cut(s)	111, 147, 222
HinP1I	GCGC	3 cut(s)	111, 147, 222
HinfI	GANTC	2 cut(s)	352, 633
HpaII	CCGG	5 cut(s)	176, 403, 435, 445, 462
Hpy188I	TCNGA	3 cut(s)	357, 415, 544
HpyAV	CCTTC	3 cut(s)	78, 196, 578
HpyCH4III	ACNGT	3 cut(s)	122, 278, 611
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	5 cut(s)	267, 478, 505, 511, 520
HpyF10VI	GCNNNNNNNGC	9 cut(s)	181, 249, 258, 264, 267, 270, 279, 511, 517
HpyF3I	CTNAG	2 cut(s)	615, 662
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	118, 326, 332
HspAI	GCGC	3 cut(s)	111, 147, 222
KflI	GGGWCCC	1 cut(s)	396
Kpn2I	TCCGGA	1 cut(s)	444
KroI	GCCGGC	1 cut(s)	175
KroNI	GCCGGC	1 cut(s)	177
Ksp22I	TGATCA	2 cut(s)	325, 576
Kzo9I	GATC	3 cut(s)	325, 533, 576
LmnI	GCTCC	2 cut(s)	384, 424
Lsp1109I	GCAGC	7 cut(s)	251, 270, 279, 282, 381, 523, 537
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	122, 605
MalI	GATC	3 cut(s)	327, 535, 578
MboI	GATC	3 cut(s)	325, 533, 576
MboII	GAAGA	2 cut(s)	397, 634
MfeI	CAATTG	1 cut(s)	515
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	2 cut(s)	86, 515
MroI	TCCGGA	1 cut(s)	444
MroNI	GCCGGC	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	3 cut(s)	23, 486, 684
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	252, 261
MspI	CCGG	5 cut(s)	176, 403, 435, 445, 462
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	137
MvnI	CGCG	3 cut(s)	111, 147, 224
MwoI	GCNNNNNNNGC	9 cut(s)	181, 249, 258, 264, 267, 270, 279, 511, 517
NaeI	GCCGGC	1 cut(s)	177
NdeII	GATC	3 cut(s)	325, 533, 576
NgoMIV	GCCGGC	1 cut(s)	175
NlaIII	CATG	3 cut(s)	118, 326, 332
NlaIV	GGNNCC	4 cut(s)	6, 397, 398, 439
NmeAIII	GCCGAG	2 cut(s)	198, 366
NmuCI	GTSAC	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	428
PagI	TCATGA	2 cut(s)	322, 328
PctI	GAATGC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	352, 633
PpuMI	RGGWCCY	2 cut(s)	396, 688
Psp124BI	GAGCTC	1 cut(s)	429
Psp1406I	AACGTT	1 cut(s)	390
Psp5II	RGGWCCY	2 cut(s)	396, 688
PspN4I	GGNNCC	4 cut(s)	6, 397, 398, 439
PspPI	GGNCC	6 cut(s)	4, 163, 178, 396, 437, 688
PspPPI	RGGWCCY	2 cut(s)	396, 688
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	4 cut(s)	28, 119, 301, 644
RsaNI	GTAC	4 cut(s)	27, 118, 300, 643
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	23, 486, 684
Sau3AI	GATC	3 cut(s)	325, 533, 576
Sau96I	GGNCC	6 cut(s)	4, 163, 178, 396, 437, 688
SduI	GDGCHC	1 cut(s)	429
SfcI	CTRYAG	3 cut(s)	253, 265, 529
Sfr274I	CTCGAG	1 cut(s)	428
SgrAI	CRCCGGYG	1 cut(s)	461
SinI	GGWCC	2 cut(s)	396, 688
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	86, 515
SsiI	CCGC	3 cut(s)	224, 227, 261
SstI	GAGCTC	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	122, 278, 611
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	4 cut(s)	92, 159, 429, 636
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	86, 515
TauI	GCSGC	3 cut(s)	227, 230, 264
TfiI	GAWTC	2 cut(s)	352, 633
Tru1I	TTAA	3 cut(s)	23, 486, 684
Tru9I	TTAA	3 cut(s)	23, 486, 684
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	7 cut(s)	258, 264, 267, 270, 369, 511, 525
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	311
VpaK11BI	GGWCC	2 cut(s)	396, 688
XapI	RAATTY	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.