FvH4_3g34540

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
29926329 .. 29928797
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34540.t1

Sequence Viewer

Length: 1056 bp
ATGAACAAACAGGCTAGGGTAGGCTCGTGTCTCGTCTCCGGCCGAAGAAGATCGAAATCCAACACAAGCTCGATCTCCTTAGGTCAACGCTTTTTCCCCTCCGAAAACATGACGTCATCATCCACATCACCATGCAGACCCATCCCGTCGTCCCTGTTCTCTATGGCCCCCTGCCCTTTTGCTTTAAGTACCCCCCATCCCCTCCTCCAGTATATTCACTCCTCTCAAATCATTCCCACTACTTCCATAATTCTCGACCGACTTCCCCAACTCCCTAAACCAACTCCACGCGCCGCTATGTACAGTCACAACGGTACCGCATTCCCACACGACTTCGACGGCCTGCCAATGCCGGCGTTGCCCTTCGGGACTTACAACAATGACTACCACCACTACCATCATCACCACGCTGCGGCGGCGAATGAGTTCAGCAACAACAGCTGTAGCAGCGGTTGCAGCAGCTACGGCGGCTCGCCAACCTACGCGAGTACCACTACTACTACAACTACGACTACTCATGATCATGAGGTTGAACCTAACATGATGATTCAGAGGAGTGTGAGCAGCCACTCGCTCCAGCAGAAGAACAACGTTGGGACCCACCGGCTCGTCTCGGACTTGCTGGAGCTCGAGACCGGCCCCGTCCGGAGGGTGTATAGCACCGGCGACTTGGATTTGCAGCAAATGCAAAGCAGCAGCTACAGATCATCATCAGAAAGTAGTCCGTTGTCAAGTGAGAGCAGTATGATCATTGAAGGAATGAGCAAAGCCTGTCGTTACAGTCCTGAAGAGAAGAAAGAGAGAATCGAGAGGTACAAAAGCAAGAGAAACCTCAGGAACTTCAACAAAACCATCAAGTATGCATGTAGGAAGACATTGGCAGACAGCAGGCCGCGCATCAGAGGACGATTTGCAAGGAACGATGAAATTGATCAGAAAAATTCCCCTAATGTTCAGTGGAGCCAAATGAGTGGGGAGGAAGATGAAGAGGATGGCGATAATTGGATCAACCTGCTCGATGCATTCTCTTCGATTGAATCGAACTCCTTAATCTAG

Protein Analysis

352

Amino Acids

39.21

Weight (kDa)

8.42

Isoelectric Point (pI)

74.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 266 - 307 1.9e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 1020
Acc65I GGTACC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 314
AccII CGCG 3 cut(s) 291, 485, 895
AccIII TCCGGA 1 cut(s) 645
AciI CCGC 7 cut(s) 294, 318, 413, 416, 450, 468, 893
AclI AACGTT 1 cut(s) 591
AclWI GGATC 1 cut(s) 1013
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 1 cut(s) 807
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 5 cut(s) 190, 302, 316, 490, 815
AfiI CCNNNNNNNGG 2 cut(s) 412, 648
AgsI TTSAA 4 cut(s) 533, 755, 844, 1037
AluBI AGCT 5 cut(s) 69, 441, 462, 628, 699
AluI AGCT 5 cut(s) 69, 441, 462, 628, 699
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 4 cut(s) 35, 40, 616, 626
AlwI GGATC 1 cut(s) 1013
Ama87I CYCGRG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 645
AoxI GGCC 5 cut(s) 40, 165, 340, 637, 890
ApeKI GCWGC 8 cut(s) 410, 447, 456, 459, 564, 679, 693, 696
ApoI RAATTY 1 cut(s) 940
Asp700I GAANNNNTTC 1 cut(s) 425
Asp718I GGTACC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 293, 897
AspS9I GGNCC 3 cut(s) 166, 597, 638
AsuHPI GGTGA 2 cut(s) 120, 395
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 1 cut(s) 597
AxyI CCTNAGG 2 cut(s) 79, 833
BaeI ACNNNNGTAYC 4 cut(s) 298, 331, 472, 505
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 630
BauI CACGAG 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 8 cut(s) 397, 459, 468, 471, 576, 691, 705, 708
BccI CCATC 5 cut(s) 149, 204, 405, 860, 986
BceAI ACGGC 2 cut(s) 355, 481
BcgI CGANNNNNNTGC 2 cut(s) 1011, 1045
BclI TGATCA 3 cut(s) 520, 747, 931
BcoDI GTCTC 4 cut(s) 35, 40, 616, 626
BfaI CTAG 2 cut(s) 15, 1054
BfmI CTRYAG 2 cut(s) 442, 700
BfuAI ACCTGC 1 cut(s) 1020
Bme18I GGWCC 1 cut(s) 597
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 3 cut(s) 166, 597, 638
BmiI GGNNCC 6 cut(s) 168, 316, 598, 599, 640, 962
BmsI GCATC 2 cut(s) 906, 1009
BpiI GAAGAC 1 cut(s) 878
BpmI CTGGAG 3 cut(s) 191, 560, 644
BsaBI GATNNNNATC 2 cut(s) 55, 709
BsaHI GRCGYC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 626
BsaWI WCCGGW 1 cut(s) 645
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 648
Bse118I RCCGGY 4 cut(s) 352, 603, 635, 662
Bse1I ACTGG 1 cut(s) 208
Bse21I CCTNAGG 2 cut(s) 79, 833
Bse8I GATNNNNATC 2 cut(s) 55, 709
BseAI TCCGGA 1 cut(s) 645
BseGI GGATG 4 cut(s) 119, 141, 196, 997
BseJI GATNNNNATC 2 cut(s) 55, 709
BseLI CCNNNNNNNGG 2 cut(s) 412, 648
BseMII CTCAG 1 cut(s) 847
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 194, 211, 568
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 8 cut(s) 397, 459, 468, 471, 576, 691, 705, 708
Bsh1236I CGCG 3 cut(s) 291, 485, 895
Bsh1285I CGRYCG 2 cut(s) 43, 259
BshFI GGCC 5 cut(s) 42, 167, 342, 639, 892
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 2 cut(s) 43, 259
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 6 cut(s) 39, 353, 604, 636, 646, 663
BslFI GGGAC 3 cut(s) 136, 382, 610
BslI CCNNNNNNNGG 2 cut(s) 412, 648
BsmAI GTCTC 4 cut(s) 35, 40, 616, 626
BsmBI CGTCTC 2 cut(s) 40, 616
BsmFI GGGAC 3 cut(s) 136, 382, 610
BsmI GAATGC 2 cut(s) 320, 1022
BsnI GGCC 5 cut(s) 42, 167, 342, 639, 892
Bso31I GGTCTC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 630
Bsp13I TCCGGA 1 cut(s) 645
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
BspACI CCGC 7 cut(s) 294, 318, 413, 416, 450, 468, 893
BspANI GGCC 5 cut(s) 42, 167, 342, 639, 892
BspCNI CTCAG 1 cut(s) 846
BspEI TCCGGA 1 cut(s) 645
BspFNI CGCG 3 cut(s) 291, 485, 895
BspHI TCATGA 2 cut(s) 517, 523
BspLI GGNNCC 6 cut(s) 168, 316, 598, 599, 640, 962
BspMI ACCTGC 1 cut(s) 1020
BspPI GGATC 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 626
BsrFI RCCGGY 4 cut(s) 352, 603, 635, 662
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 4 cut(s) 352, 603, 635, 662
BssMI GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
BssNI GRCGYC 1 cut(s) 113
BssSI CACGAG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 305, 314, 782
Bst6I CTCTTC 3 cut(s) 783, 981, 1033
BstACI GRCGYC 1 cut(s) 113
BstAPI GCANNNNNTGC 2 cut(s) 453, 685
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 4 cut(s) 344, 354, 473, 890
BstDEI CTNAG 2 cut(s) 79, 833
BstF5I GGATG 4 cut(s) 119, 141, 196, 997
BstFNI CGCG 3 cut(s) 291, 485, 895
BstHHI GCGC 2 cut(s) 293, 897
BstKTI GATC 7 cut(s) 53, 75, 523, 707, 750, 934, 1008
BstMAI GTCTC 4 cut(s) 35, 40, 616, 626
BstMBI GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
BstMCI CGRYCG 2 cut(s) 43, 259
BstNSI RCATGY 1 cut(s) 867
BstSFI CTRYAG 2 cut(s) 442, 700
BstUI CGCG 3 cut(s) 291, 485, 895
BstV1I GCAGC 8 cut(s) 397, 459, 468, 471, 576, 691, 705, 708
BstV2I GAAGAC 1 cut(s) 878
BstXI CCANNNNNNTGG 1 cut(s) 971
BstZI CGGCCG 1 cut(s) 40
Bsu36I CCTNAGG 2 cut(s) 79, 833
BsuRI GGCC 5 cut(s) 42, 167, 342, 639, 892
BtsCI GGATG 4 cut(s) 119, 141, 196, 997
BtsIMutI CAGTG 1 cut(s) 962
BveI ACCTGC 1 cut(s) 1020
Cac8I GCNNGC 4 cut(s) 344, 354, 473, 890
CciI TCATGA 2 cut(s) 517, 523
CfoI GCGC 2 cut(s) 293, 897
Cfr10I RCCGGY 4 cut(s) 352, 603, 635, 662
Cfr13I GGNCC 3 cut(s) 166, 597, 638
Csp6I GTAC 5 cut(s) 189, 301, 315, 489, 814
CviAII CATG 6 cut(s) 109, 132, 518, 524, 541, 864
CviQI GTAC 5 cut(s) 189, 301, 315, 489, 814
DdeI CTNAG 2 cut(s) 79, 833
DpnI GATC 7 cut(s) 52, 74, 522, 706, 749, 933, 1007
DpnII GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 3 cut(s) 783, 981, 1033
EarI CTCTTC 3 cut(s) 783, 981, 1033
Ecl136II GAGCTC 1 cut(s) 628
EclXI CGGCCG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 626
Eco47I GGWCC 1 cut(s) 597
Eco52I CGGCCG 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 807
Eco81I CCTNAGG 2 cut(s) 79, 833
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 628
EcoO109I RGGNCCY 1 cut(s) 597
EcoT22I ATGCAT 2 cut(s) 865, 1024
EcoT38I GRGCYC 1 cut(s) 630
Esp3I CGTCTC 2 cut(s) 40, 616
FaeI CATG 6 cut(s) 112, 135, 521, 527, 544, 867
FaqI GGGAC 3 cut(s) 136, 382, 610
FatI CATG 6 cut(s) 108, 131, 517, 523, 540, 863
FbaI TGATCA 3 cut(s) 520, 747, 931
FokI GGATG 4 cut(s) 106, 128, 183, 1004
FriOI GRGCYC 1 cut(s) 630
FspBI CTAG 2 cut(s) 15, 1054
GlaI GCGC 2 cut(s) 292, 896
GsuI CTGGAG 3 cut(s) 191, 560, 644
HaeIII GGCC 5 cut(s) 42, 167, 342, 639, 892
HapII CCGG 6 cut(s) 39, 353, 604, 636, 646, 663
HhaI GCGC 2 cut(s) 293, 897
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 6 cut(s) 112, 135, 521, 527, 544, 867
Hin6I GCGC 2 cut(s) 291, 895
HinP1I GCGC 2 cut(s) 291, 895
HincII GTYRAC 1 cut(s) 86
HindII GTYRAC 1 cut(s) 86
HinfI GANTC 3 cut(s) 547, 804, 1037
HpaII CCGG 6 cut(s) 39, 353, 604, 636, 646, 663
HphI GGTGA 2 cut(s) 120, 395
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 6 cut(s) 103, 552, 616, 715, 902, 936
Hpy188III TCNNGA 9 cut(s) 254, 367, 518, 524, 631, 646, 785, 808, 835
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 151, 341
HpyAV CCTTC 2 cut(s) 373, 749
HpyCH4III ACNGT 3 cut(s) 305, 314, 782
HpyCH4IV ACGT 2 cut(s) 113, 591
HpyCH4V TGCA 7 cut(s) 135, 456, 679, 688, 863, 914, 1022
HpyF3I CTNAG 2 cut(s) 79, 833
HpySE526I ACGT 2 cut(s) 113, 591
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 6 cut(s) 112, 135, 521, 527, 544, 867
HspAI GCGC 2 cut(s) 291, 895
KflI GGGWCCC 1 cut(s) 597
Kpn2I TCCGGA 1 cut(s) 645
KpnI GGTACC 1 cut(s) 318
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
Ksp22I TGATCA 3 cut(s) 520, 747, 931
Kzo9I GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
LmnI GCTCC 3 cut(s) 579, 625, 960
Lsp1109I GCAGC 8 cut(s) 397, 459, 468, 471, 576, 691, 705, 708
LweI GCATC 2 cut(s) 906, 1009
MaeI CTAG 2 cut(s) 15, 1054
MaeII ACGT 2 cut(s) 113, 591
MaeIII GTNAC 2 cut(s) 305, 776
MalI GATC 7 cut(s) 52, 74, 522, 706, 749, 933, 1007
MboI GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
MboII GAAGA 9 cut(s) 57, 60, 595, 800, 805, 883, 992, 998, 1020
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 4 cut(s) 249, 927, 940, 1000
MmeI TCCRAC 1 cut(s) 84
Mph1103I ATGCAT 2 cut(s) 865, 1024
MroI TCCGGA 1 cut(s) 645
MroNI GCCGGC 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 425
MseI TTAA 2 cut(s) 185, 1049
MslI CAYNNNNRTG 2 cut(s) 130, 522
MspA1I CMGCKG 2 cut(s) 441, 450
MspI CCGG 6 cut(s) 39, 353, 604, 636, 646, 663
Mva1269I GAATGC 2 cut(s) 320, 1022
MvnI CGCG 3 cut(s) 291, 485, 895
NaeI GCCGGC 1 cut(s) 354
NdeII GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 6 cut(s) 112, 135, 521, 527, 544, 867
NlaIV GGNNCC 6 cut(s) 168, 316, 598, 599, 640, 962
NmuCI GTSAC 1 cut(s) 305
NsiI ATGCAT 2 cut(s) 865, 1024
NspI RCATGY 1 cut(s) 867
PaeR7I CTCGAG 1 cut(s) 629
PagI TCATGA 2 cut(s) 517, 523
PcsI WCGNNNNNNNCGW 1 cut(s) 1037
PctI GAATGC 2 cut(s) 320, 1022
PdiI GCCGGC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 425
PfeI GAWTC 3 cut(s) 547, 804, 1037
PpuMI RGGWCCY 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 630
Psp1406I AACGTT 1 cut(s) 591
Psp5II RGGWCCY 1 cut(s) 597
PspN4I GGNNCC 6 cut(s) 168, 316, 598, 599, 640, 962
PspPI GGNCC 3 cut(s) 166, 597, 638
PspPPI RGGWCCY 1 cut(s) 597
PvuII CAGCTG 1 cut(s) 441
RsaI GTAC 5 cut(s) 190, 302, 316, 490, 815
RsaNI GTAC 5 cut(s) 189, 301, 315, 489, 814
RseI CAYNNNNRTG 2 cut(s) 130, 522
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 2 cut(s) 185, 1049
Sau3AI GATC 7 cut(s) 50, 72, 520, 704, 747, 931, 1005
Sau96I GGNCC 3 cut(s) 166, 597, 638
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 2 cut(s) 906, 1009
SfcI CTRYAG 2 cut(s) 442, 700
Sfr274I CTCGAG 1 cut(s) 629
SgrAI CRCCGGYG 1 cut(s) 662
SinI GGWCC 1 cut(s) 597
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 2 cut(s) 130, 522
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 249, 927, 940, 1000
SsiI CCGC 7 cut(s) 294, 318, 413, 416, 450, 468, 893
SspMI CTAG 2 cut(s) 15, 1054
SstI GAGCTC 1 cut(s) 630
TaaI ACNGT 3 cut(s) 305, 314, 782
TaiI ACGT 2 cut(s) 116, 594
TaqI TCGA 9 cut(s) 53, 71, 255, 336, 630, 807, 1017, 1031, 1040
TaqII GACCGA 1 cut(s) 273
TasI AATT 4 cut(s) 249, 927, 940, 1000
TatI WGTACW 1 cut(s) 300
TauI GCSGC 5 cut(s) 296, 416, 419, 471, 895
TfiI GAWTC 3 cut(s) 547, 804, 1037
Tru1I TTAA 2 cut(s) 185, 1049
Tru9I TTAA 2 cut(s) 185, 1049
TscAI CASTG 1 cut(s) 962
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 8 cut(s) 410, 447, 456, 459, 564, 679, 693, 696
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 17, 939, 999
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 597
XapI RAATTY 1 cut(s) 940
XceI RCATGY 1 cut(s) 867
XhoI CTCGAG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 2 cut(s) 15, 1054
ZraI GACGTC 1 cut(s) 114
Zsp2I ATGCAT 2 cut(s) 865, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.